Wall clock time and date at job start Mon Mar 30 2020 00:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46909 * 2 1 4 4 C 1.50698 * 109.47555 * 119.99949 * 2 1 3 5 5 C 1.34327 * 126.44785 * 119.99840 * 4 2 1 6 6 N 1.34475 * 107.67138 * 180.02562 * 5 4 2 7 7 C 1.30254 * 108.70229 * 0.02562 * 6 5 4 8 8 C 1.50693 * 125.61905 * 179.97438 * 7 6 5 9 9 O 1.45192 * 109.47621 * 90.02139 * 8 7 6 10 10 C 1.34230 * 117.00559 * 179.97438 * 9 8 7 11 11 O 1.20829 * 119.99537 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00213 * 179.97438 * 10 9 8 13 13 H 1.08997 * 109.47174 * 60.00654 * 12 10 9 14 14 C 1.52996 * 109.47480 * 300.00012 * 12 10 9 15 15 C 1.50709 * 109.47141 * 180.02562 * 12 10 9 16 16 H 1.07998 * 119.99679 * 5.46744 * 15 12 10 17 17 C 1.37875 * 120.00067 * 185.47227 * 15 12 10 18 18 N 1.31510 * 119.99980 * 9.64381 * 17 15 12 19 19 Si 1.86798 * 119.99667 * 189.64910 * 17 15 12 20 20 H 1.48505 * 109.47249 * 84.99185 * 19 17 15 21 21 H 1.48502 * 109.46808 * 204.98712 * 19 17 15 22 22 H 1.48490 * 109.47264 * 324.98966 * 19 17 15 23 23 O 1.33968 * 108.75831 * 359.73207 * 7 6 5 24 24 H 1.08999 * 109.47267 * 59.99958 * 1 2 3 25 25 H 1.09005 * 109.47172 * 299.99946 * 1 2 3 26 26 H 1.09006 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47044 * 240.00134 * 2 1 3 28 28 H 1.08999 * 109.47190 * 300.00089 * 3 2 1 29 29 H 1.08996 * 109.47158 * 60.00204 * 3 2 1 30 30 H 1.09001 * 109.46733 * 180.02562 * 3 2 1 31 31 H 1.08005 * 126.16367 * 0.02562 * 5 4 2 32 32 H 1.09002 * 109.46865 * 210.02702 * 8 7 6 33 33 H 1.09010 * 109.47094 * 330.01978 * 8 7 6 34 34 H 1.09003 * 109.47187 * 303.63407 * 14 12 10 35 35 H 1.08995 * 109.46761 * 63.63024 * 14 12 10 36 36 H 1.08996 * 109.47633 * 183.63139 * 14 12 10 37 37 H 0.97001 * 119.99636 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8078 -1.8069 1.2581 6 7 3.0278 -2.1188 2.5476 7 6 2.4125 -1.2502 3.2982 8 6 2.4050 -1.2418 4.8051 9 8 3.5197 -0.4481 5.2904 10 6 3.6563 -0.3386 6.6212 11 8 2.8705 -0.8882 7.3563 12 6 4.7903 0.4688 7.1984 13 1 4.7127 1.5007 6.8560 14 6 6.1239 -0.1227 6.7375 15 6 4.7183 0.4317 8.7033 16 1 3.9851 -0.1915 9.1936 17 6 5.5883 1.1935 9.4541 18 7 6.3498 2.0914 8.8682 19 14 5.6855 0.9499 11.3036 20 1 6.6212 -0.1623 11.6080 21 1 6.1757 2.1979 11.9421 22 1 4.3370 0.6207 11.8311 23 8 1.7919 -0.3624 2.5099 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 3.1863 -2.3417 0.3995 32 1 1.4695 -0.8104 5.1613 33 1 2.4980 -2.2631 5.1747 34 1 6.1738 -1.1732 7.0240 35 1 6.2039 -0.0375 5.6539 36 1 6.9440 0.4211 7.2063 37 1 6.9621 2.6271 9.3964 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327136599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:50 Heat of formation + Delta-G solvation = -80.382402 kcal Electronic energy + Delta-G solvation = -19892.255847 eV Core-core repulsion = 16636.233430 eV Total energy + Delta-G solvation = -3256.022417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.43573 -39.68105 -36.21606 -35.74799 -34.77822 -33.88522 -31.13387 -30.36838 -27.52116 -27.09834 -25.18945 -23.31291 -22.84787 -22.00779 -20.45802 -19.95089 -17.30523 -16.99244 -16.48469 -16.01721 -15.96852 -15.56906 -15.30755 -14.77689 -14.33579 -13.54306 -13.48914 -13.38252 -13.06374 -12.69966 -12.53380 -12.11272 -11.92949 -11.67633 -11.59374 -11.39134 -11.36184 -11.05876 -10.93447 -10.69109 -10.54724 -10.44485 -10.26131 -10.07890 -9.31204 -9.11966 -8.77675 -8.46517 -6.15199 -4.16713 1.23341 2.35625 2.58036 3.19554 3.31006 3.36201 3.40098 3.53937 4.08285 4.32086 4.42089 4.53917 4.70413 4.85797 5.01604 5.19822 5.20810 5.27908 5.31720 5.45335 5.47869 5.51538 5.66191 5.83302 5.88599 5.98028 5.98989 6.17461 6.59272 6.78926 6.79204 7.05842 7.37898 7.60593 7.65673 7.87233 8.06928 8.72889 8.91472 9.47538 10.95052 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.003580 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.183746 B = 7819.750925 C = 7999.222659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.151 4.151 4 C -0.035 4.035 5 C -0.043 4.043 6 N -0.460 5.460 7 C 0.195 3.805 8 C 0.160 3.840 9 O -0.361 6.361 10 C 0.471 3.529 11 O -0.512 6.512 12 C 0.058 3.942 13 H 0.072 0.928 14 C -0.128 4.128 15 C -0.517 4.517 16 H 0.077 0.923 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.272 1.272 23 O -0.189 6.189 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.184 0.816 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.079 0.921 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 -3.226 -18.366 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 C -0.209 4.209 4 C -0.088 4.088 5 C -0.182 4.182 6 N -0.191 5.191 7 C -0.012 4.012 8 C 0.085 3.915 9 O -0.279 6.279 10 C 0.315 3.685 11 O -0.398 6.398 12 C 0.039 3.961 13 H 0.090 0.910 14 C -0.186 4.186 15 C -0.555 4.555 16 H 0.095 0.905 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.197 1.197 23 O -0.075 6.075 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.201 0.799 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.362 -3.713 -17.819 20.031 hybrid contribution -0.315 0.330 0.612 0.764 sum -8.677 -3.383 -17.207 19.566 Atomic orbital electron populations 1.21892 0.93445 1.02553 1.02853 1.19763 0.96547 0.96175 0.90136 1.21899 1.01838 0.94281 1.02853 1.23515 1.02663 0.98732 0.83931 1.23111 1.02245 0.97817 0.95013 1.70446 1.19791 1.26635 1.02188 1.25655 0.94407 0.86156 0.94965 1.20746 0.91480 0.98642 0.80670 1.86706 1.47201 1.66029 1.27919 1.25492 0.86772 0.78579 0.77628 1.90520 1.44085 1.45268 1.59890 1.18816 0.86411 0.94740 0.96086 0.90994 1.21671 0.99462 0.99678 0.97744 1.21081 1.18753 1.27218 0.88424 0.90519 1.24934 0.95483 0.94155 0.99193 1.69965 1.25006 1.21419 1.36306 0.86427 0.78655 0.77519 0.84418 1.20354 1.21227 1.19673 1.84383 1.59156 1.47664 1.16302 0.91408 0.91919 0.92167 0.87856 0.91429 0.91813 0.91926 0.79875 0.88723 0.87206 0.94621 0.95279 0.90198 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.18 37.16 0.34 -0.72 16 2 C -0.01 -0.06 3.33 -91.77 -0.31 -0.37 16 3 C -0.15 -1.21 9.18 37.16 0.34 -0.87 16 4 C -0.03 -0.41 5.89 -35.69 -0.21 -0.62 16 5 C -0.04 -0.54 11.78 -17.77 -0.21 -0.75 16 6 N -0.46 -7.39 11.29 -11.10 -0.13 -7.52 16 7 C 0.19 3.13 7.98 -12.95 -0.10 3.03 16 8 C 0.16 2.66 6.09 36.00 0.22 2.88 16 9 O -0.36 -7.37 10.13 -39.26 -0.40 -7.77 16 10 C 0.47 10.99 7.25 36.00 0.26 11.25 16 11 O -0.51 -12.70 15.22 -18.75 -0.29 -12.99 16 12 C 0.06 1.48 2.61 -92.92 -0.24 1.24 16 13 H 0.07 1.91 8.09 -51.93 -0.42 1.49 16 14 C -0.13 -3.00 8.99 37.16 0.33 -2.66 16 15 C -0.52 -14.42 8.28 -34.44 -0.29 -14.71 16 16 H 0.08 2.22 6.79 -52.49 -0.36 1.86 16 17 C 0.06 1.77 5.17 -17.82 -0.09 1.68 16 18 N -0.89 -24.87 12.17 55.43 0.67 -24.20 16 19 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 O -0.19 -2.80 10.78 5.35 0.06 -2.74 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 33 H 0.11 1.73 8.14 -51.92 -0.42 1.31 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 2.00 6.83 -51.93 -0.35 1.64 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -31.28 323.79 -5.51 -36.79 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.34 Total: -2.18 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.05 Total: -0.62 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.55 Total: -31.72 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.63 Total: -23.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.28 -5.51 -36.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327136599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.590 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds