Wall clock time and date at job start Mon Mar 30 2020 00:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46909 * 2 1 4 4 C 1.50698 * 109.47555 * 119.99949 * 2 1 3 5 5 C 1.34327 * 126.44785 * 119.99840 * 4 2 1 6 6 N 1.34475 * 107.67138 * 180.02562 * 5 4 2 7 7 C 1.30254 * 108.70229 * 0.02562 * 6 5 4 8 8 C 1.50693 * 125.61905 * 179.97438 * 7 6 5 9 9 O 1.45192 * 109.47621 * 90.02139 * 8 7 6 10 10 C 1.34230 * 117.00559 * 179.97438 * 9 8 7 11 11 O 1.20829 * 119.99537 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00213 * 179.97438 * 10 9 8 13 13 H 1.08997 * 109.47174 * 60.00654 * 12 10 9 14 14 C 1.52996 * 109.47480 * 300.00012 * 12 10 9 15 15 C 1.50709 * 109.47141 * 180.02562 * 12 10 9 16 16 H 1.07998 * 119.99679 * 5.46744 * 15 12 10 17 17 C 1.37875 * 120.00067 * 185.47227 * 15 12 10 18 18 N 1.31510 * 119.99980 * 9.64381 * 17 15 12 19 19 Si 1.86798 * 119.99667 * 189.64910 * 17 15 12 20 20 H 1.48505 * 109.47249 * 84.99185 * 19 17 15 21 21 H 1.48502 * 109.46808 * 204.98712 * 19 17 15 22 22 H 1.48490 * 109.47264 * 324.98966 * 19 17 15 23 23 O 1.33968 * 108.75831 * 359.73207 * 7 6 5 24 24 H 1.08999 * 109.47267 * 59.99958 * 1 2 3 25 25 H 1.09005 * 109.47172 * 299.99946 * 1 2 3 26 26 H 1.09006 * 109.47139 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47044 * 240.00134 * 2 1 3 28 28 H 1.08999 * 109.47190 * 300.00089 * 3 2 1 29 29 H 1.08996 * 109.47158 * 60.00204 * 3 2 1 30 30 H 1.09001 * 109.46733 * 180.02562 * 3 2 1 31 31 H 1.08005 * 126.16367 * 0.02562 * 5 4 2 32 32 H 1.09002 * 109.46865 * 210.02702 * 8 7 6 33 33 H 1.09010 * 109.47094 * 330.01978 * 8 7 6 34 34 H 1.09003 * 109.47187 * 303.63407 * 14 12 10 35 35 H 1.08995 * 109.46761 * 63.63024 * 14 12 10 36 36 H 1.08996 * 109.47633 * 183.63139 * 14 12 10 37 37 H 0.97001 * 119.99636 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8078 -1.8069 1.2581 6 7 3.0278 -2.1188 2.5476 7 6 2.4125 -1.2502 3.2982 8 6 2.4050 -1.2418 4.8051 9 8 3.5197 -0.4481 5.2904 10 6 3.6563 -0.3386 6.6212 11 8 2.8705 -0.8882 7.3563 12 6 4.7903 0.4688 7.1984 13 1 4.7127 1.5007 6.8560 14 6 6.1239 -0.1227 6.7375 15 6 4.7183 0.4317 8.7033 16 1 3.9851 -0.1915 9.1936 17 6 5.5883 1.1935 9.4541 18 7 6.3498 2.0914 8.8682 19 14 5.6855 0.9499 11.3036 20 1 6.6212 -0.1623 11.6080 21 1 6.1757 2.1979 11.9421 22 1 4.3370 0.6207 11.8311 23 8 1.7919 -0.3624 2.5099 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4425 -0.0005 31 1 3.1863 -2.3417 0.3995 32 1 1.4695 -0.8104 5.1613 33 1 2.4980 -2.2631 5.1747 34 1 6.1738 -1.1732 7.0240 35 1 6.2039 -0.0375 5.6539 36 1 6.9440 0.4211 7.2063 37 1 6.9621 2.6271 9.3964 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327136599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:50 Heat of formation + Delta-G solvation = -100.171999 kcal Electronic energy + Delta-G solvation = -19893.113988 eV Core-core repulsion = 16636.233430 eV Total energy + Delta-G solvation = -3256.880558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.52108 -41.45958 -37.74863 -36.66503 -35.91583 -35.89865 -32.93327 -31.78282 -28.27702 -28.10471 -27.25588 -25.09019 -23.83976 -23.15131 -21.77323 -21.36818 -18.83657 -18.43326 -18.19216 -17.57180 -17.39393 -17.18677 -16.33479 -16.22606 -15.49263 -14.92729 -14.79559 -14.50495 -14.35838 -14.12179 -13.74740 -13.58822 -13.11017 -12.97584 -12.87071 -12.68666 -12.60587 -12.51496 -12.37765 -12.20500 -12.05324 -12.00756 -11.89440 -11.60264 -11.19603 -11.12860 -10.56097 -9.85105 -8.24689 -6.33644 0.10279 1.21083 1.33368 1.43745 1.44793 1.52261 1.55446 2.10366 2.44504 2.88702 3.08544 3.49547 3.81664 3.88613 3.92198 4.08972 4.14607 4.23270 4.33886 4.60528 4.63819 4.72563 4.73501 4.82238 4.89335 4.92067 4.93410 5.10087 5.16700 5.24767 5.28875 5.33154 5.38021 5.62952 5.75923 6.02684 6.55959 6.72684 6.91309 7.34048 8.85352 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.003580 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.183746 B = 7819.750925 C = 7999.222659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.007 4.007 3 C -0.151 4.151 4 C -0.024 4.024 5 C -0.055 4.055 6 N -0.478 5.478 7 C 0.166 3.834 8 C 0.159 3.841 9 O -0.362 6.362 10 C 0.480 3.520 11 O -0.531 6.531 12 C 0.051 3.949 13 H 0.055 0.945 14 C -0.115 4.115 15 C -0.541 4.541 16 H 0.061 0.939 17 C 0.025 3.975 18 N -0.910 5.910 19 Si 0.963 3.037 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.274 1.274 23 O -0.201 6.201 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.137 0.863 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.219 0.781 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.858 -3.541 -20.026 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 C -0.209 4.209 4 C -0.078 4.078 5 C -0.194 4.194 6 N -0.210 5.210 7 C -0.039 4.039 8 C 0.085 3.915 9 O -0.280 6.280 10 C 0.326 3.674 11 O -0.419 6.419 12 C 0.032 3.968 13 H 0.073 0.927 14 C -0.173 4.173 15 C -0.579 4.579 16 H 0.079 0.921 17 C -0.176 4.176 18 N -0.548 5.548 19 Si 0.787 3.213 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.199 1.199 23 O -0.087 6.087 24 H 0.111 0.889 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.155 0.845 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.660 -4.020 -19.501 21.713 hybrid contribution -0.276 0.443 0.930 1.067 sum -8.936 -3.577 -18.570 20.917 Atomic orbital electron populations 1.21893 0.92618 1.02812 1.03230 1.20092 0.97189 0.96079 0.89195 1.21912 1.01418 0.94333 1.03192 1.24439 1.01152 0.98325 0.83842 1.23723 1.02553 0.98445 0.94697 1.70405 1.19778 1.26919 1.03899 1.25350 0.96454 0.87405 0.94694 1.20927 0.90502 0.98463 0.81592 1.86620 1.48821 1.66505 1.26019 1.24892 0.85984 0.78080 0.78493 1.90499 1.44607 1.46120 1.60700 1.18722 0.88294 0.94436 0.95370 0.92733 1.21507 0.97730 0.99324 0.98716 1.21218 1.19066 1.27620 0.89949 0.92124 1.25651 0.94929 0.93636 1.03341 1.70040 1.25225 1.21683 1.37875 0.85498 0.78531 0.77912 0.79332 1.19512 1.20177 1.19863 1.84380 1.59138 1.47623 1.17578 0.88919 0.93693 0.91983 0.84497 0.88748 0.93858 0.92590 0.76456 0.87427 0.86508 0.94239 0.93361 0.91915 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.18 71.98 0.66 -1.07 16 2 C -0.01 -0.09 3.33 -11.54 -0.04 -0.13 16 3 C -0.15 -2.09 9.18 71.98 0.66 -1.43 16 4 C -0.02 -0.54 5.89 24.79 0.15 -0.39 16 5 C -0.06 -1.28 11.78 83.39 0.98 -0.30 16 6 N -0.48 -14.98 11.29 -303.84 -3.43 -18.41 16 7 C 0.17 5.32 7.98 88.34 0.71 6.03 16 8 C 0.16 5.33 6.09 71.23 0.43 5.77 16 9 O -0.36 -14.93 10.13 -51.41 -0.52 -15.45 16 10 C 0.48 22.77 7.25 71.24 0.52 23.29 16 11 O -0.53 -26.78 15.22 21.96 0.33 -26.44 16 12 C 0.05 2.64 2.61 -12.29 -0.03 2.60 16 13 H 0.05 2.99 8.09 -2.39 -0.02 2.97 16 14 C -0.11 -5.42 8.99 71.98 0.65 -4.77 16 15 C -0.54 -30.68 8.28 25.60 0.21 -30.47 16 16 H 0.06 3.58 6.79 -2.91 -0.02 3.56 16 17 C 0.02 1.37 5.17 84.65 0.44 1.81 16 18 N -0.91 -51.14 12.17 21.45 0.26 -50.88 16 19 Si 0.96 43.74 29.55 68.60 2.03 45.76 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 O -0.20 -5.89 10.78 -3.76 -0.04 -5.93 16 24 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.14 0.95 8.11 -2.39 -0.02 0.93 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.22 3.23 8.06 -2.91 -0.02 3.20 16 32 H 0.11 3.26 8.13 -2.39 -0.02 3.24 16 33 H 0.12 3.70 8.14 -2.38 -0.02 3.68 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 3.16 6.83 -2.39 -0.02 3.14 16 37 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -67.40 323.79 5.02 -62.38 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 1.06 Total: 8.05 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.33 Total: 0.92 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -3.17 Total: -69.30 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.23 Total: -47.83 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.40 5.02 -62.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327136599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.788 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds