Wall clock time and date at job start Mon Mar 30 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46918 * 2 1 4 4 C 1.50698 * 109.47103 * 239.99604 * 2 1 3 5 5 H 1.07998 * 120.00620 * 240.00516 * 4 2 1 6 6 C 1.37886 * 119.99599 * 60.00202 * 4 2 1 7 7 N 1.31518 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46628 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47271 * 120.00007 * 8 6 4 11 11 H 1.48504 * 109.46915 * 240.00395 * 8 6 4 12 12 C 1.50703 * 109.47083 * 120.00244 * 2 1 3 13 13 O 1.20821 * 120.00182 * 119.99592 * 12 2 1 14 14 O 1.34233 * 119.99843 * 300.00083 * 12 2 1 15 15 C 1.45198 * 116.99895 * 180.02562 * 14 12 2 16 16 H 1.08993 * 110.43802 * 328.91133 * 15 14 12 17 17 C 1.54861 * 110.46819 * 206.22932 * 15 14 12 18 18 C 1.54480 * 101.66110 * 216.51449 * 17 15 14 19 19 N 1.46760 * 105.54782 * 25.43666 * 18 17 15 20 20 C 1.46510 * 124.34729 * 162.95825 * 19 18 17 21 21 C 1.52996 * 117.49706 * 188.61707 * 20 19 18 22 22 C 1.52995 * 60.00292 * 252.51425 * 21 20 19 23 23 C 1.34415 * 111.30303 * 342.93897 * 19 18 17 24 24 O 1.21284 * 124.94104 * 180.39099 * 23 19 18 25 25 H 1.08997 * 109.46867 * 59.99786 * 1 2 3 26 26 H 1.09003 * 109.46698 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47053 * 299.99594 * 1 2 3 28 28 H 0.96998 * 119.99363 * 180.02562 * 7 6 4 29 29 H 1.08997 * 111.03764 * 98.42181 * 17 15 14 30 30 H 1.09000 * 110.99735 * 334.59075 * 17 15 14 31 31 H 1.09002 * 110.24746 * 266.39097 * 18 17 15 32 32 H 1.09002 * 110.24236 * 144.47820 * 18 17 15 33 33 H 1.08994 * 115.54852 * 334.33069 * 20 19 18 34 34 H 1.09003 * 117.49927 * 0.02562 * 21 20 19 35 35 H 1.08998 * 117.49660 * 145.02064 * 21 20 19 36 36 H 1.08999 * 117.50153 * 252.50953 * 22 21 20 37 37 H 1.09002 * 117.49755 * 107.49230 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1484 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 6 2.0324 -0.7105 1.2305 13 8 2.7270 -1.6929 1.1196 14 8 1.7081 -0.2519 2.4496 15 6 2.2277 -0.9858 3.5896 16 1 2.3301 -2.0434 3.3469 17 6 1.3079 -0.7958 4.8209 18 6 2.3352 -0.7477 5.9736 19 7 3.5878 -0.2845 5.3651 20 6 4.7256 0.2481 6.1190 21 6 5.8721 0.8719 5.3208 22 6 6.0613 -0.4880 5.9959 23 6 3.5573 -0.4120 4.0274 24 8 4.4636 -0.1106 3.2800 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1614 -3.4844 29 1 0.6303 -1.6416 4.9374 30 1 0.7532 0.1401 4.7534 31 1 2.4686 -1.7412 6.4018 32 1 2.0074 -0.0473 6.7419 33 1 4.4832 0.6930 7.0841 34 1 5.7797 0.8865 4.2348 35 1 6.3842 1.7277 5.7606 36 1 6.6979 -0.5269 6.8798 37 1 6.0935 -1.3683 5.3540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330231948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:54 Heat of formation + Delta-G solvation = -83.577300 kcal Electronic energy + Delta-G solvation = -20736.083302 eV Core-core repulsion = 17479.922344 eV Total energy + Delta-G solvation = -3256.160958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88229 -39.24435 -36.68115 -36.43263 -35.20930 -33.85139 -30.82755 -30.19514 -27.36303 -25.17784 -23.65505 -22.88728 -22.49475 -21.74544 -20.05362 -19.12907 -17.33640 -16.98340 -16.28623 -15.93417 -15.52361 -15.42443 -14.96739 -14.46354 -14.21314 -13.72111 -13.36028 -13.29794 -12.79922 -12.62550 -12.38650 -12.26356 -11.67001 -11.58972 -11.20928 -11.04317 -11.03051 -10.81853 -10.69927 -10.64854 -10.54569 -10.28376 -10.01985 -9.21109 -9.09283 -9.00178 -8.62271 -8.41803 -6.07099 -4.11804 2.38946 2.69027 3.31592 3.34191 3.39240 3.44813 3.55597 3.75734 4.26909 4.30173 4.44720 4.66234 4.74052 4.79590 4.90786 4.95321 5.17240 5.26439 5.30670 5.44629 5.57436 5.63632 5.73500 5.90047 6.14467 6.20955 6.60167 6.67829 6.86765 6.88998 6.96338 7.18122 7.46656 7.76548 7.97927 8.15885 8.18346 8.85989 8.97454 9.53391 11.00565 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.004725 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.244465 B = 5924.208895 C = 6434.628350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.509 4.509 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.466 3.534 13 O -0.506 6.506 14 O -0.342 6.342 15 C 0.052 3.948 16 H 0.116 0.884 17 C -0.126 4.126 18 C 0.109 3.891 19 N -0.596 5.596 20 C 0.081 3.919 21 C -0.190 4.190 22 C -0.192 4.192 23 C 0.507 3.493 24 O -0.498 6.498 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -1.018 19.981 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.547 4.547 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.732 3.268 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.311 3.689 13 O -0.391 6.391 14 O -0.260 6.260 15 C -0.008 4.008 16 H 0.134 0.866 17 C -0.163 4.163 18 C -0.014 4.014 19 N -0.331 5.331 20 C -0.022 4.022 21 C -0.228 4.228 22 C -0.231 4.231 23 C 0.294 3.706 24 O -0.372 6.372 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.625 -1.036 19.436 19.531 hybrid contribution 0.430 -0.553 -0.618 0.934 sum 2.055 -1.589 18.817 18.996 Atomic orbital electron populations 1.21742 0.95554 1.00040 1.01768 1.18780 0.94817 0.97049 0.85302 0.91748 1.21177 1.31683 1.13184 0.88703 0.90565 1.24936 0.94931 0.95038 0.99118 1.69892 1.36715 1.22848 1.23710 0.86321 0.78626 0.79748 0.82128 1.19499 1.20895 1.20883 1.25448 0.76522 0.83275 0.83700 1.90499 1.35674 1.26782 1.86162 1.86789 1.69069 1.55318 1.14830 1.23147 0.91988 0.98879 0.86776 0.86642 1.22784 0.97153 1.05542 0.90854 1.22082 0.82575 1.00460 0.96240 1.47536 1.15781 1.63187 1.06605 1.21507 0.81138 1.02721 0.96876 1.23762 0.99383 0.96072 1.03545 1.23359 0.99370 0.97069 1.03312 1.21182 0.89607 0.77907 0.81911 1.90653 1.40695 1.48912 1.56919 0.88503 0.94934 0.95794 0.92782 0.88130 0.88198 0.90638 0.89720 0.85291 0.84989 0.88450 0.88256 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.90 37.16 0.33 -2.85 16 2 C 0.06 1.57 2.74 -92.92 -0.25 1.32 16 3 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 4 C -0.51 -14.77 8.37 -34.44 -0.29 -15.06 16 5 H 0.08 2.32 6.76 -52.49 -0.35 1.96 16 6 C 0.06 1.72 5.30 -17.81 -0.09 1.62 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.47 11.52 7.24 36.01 0.26 11.78 16 13 O -0.51 -13.58 14.72 -18.75 -0.28 -13.86 16 14 O -0.34 -7.07 9.86 -42.17 -0.42 -7.49 16 15 C 0.05 0.85 3.22 -26.62 -0.09 0.76 16 16 H 0.12 1.95 7.25 -51.93 -0.38 1.57 16 17 C -0.13 -1.28 6.93 -24.97 -0.17 -1.46 16 18 C 0.11 0.93 7.34 -3.12 -0.02 0.91 16 19 N -0.60 -7.57 3.27 -164.84 -0.54 -8.11 16 20 C 0.08 0.88 6.88 -67.93 -0.47 0.42 16 21 C -0.19 -2.37 9.77 -26.74 -0.26 -2.64 16 22 C -0.19 -2.11 10.34 -26.73 -0.28 -2.39 16 23 C 0.51 8.87 7.56 -10.86 -0.08 8.79 16 24 O -0.50 -10.84 14.69 1.47 0.02 -10.82 16 25 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.13 2.20 5.30 -51.93 -0.28 1.92 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -34.10 312.54 -7.41 -41.51 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.10 Total: 0.56 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.42 Total: 1.21 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.09 Total: -32.81 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.67 Total: -32.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.10 -7.41 -41.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.063 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds