Wall clock time and date at job start Mon Mar 30 2020 00:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46918 * 2 1 4 4 C 1.50698 * 109.47103 * 239.99604 * 2 1 3 5 5 H 1.07998 * 120.00620 * 240.00516 * 4 2 1 6 6 C 1.37886 * 119.99599 * 60.00202 * 4 2 1 7 7 N 1.31518 * 119.99887 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00063 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46628 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47271 * 120.00007 * 8 6 4 11 11 H 1.48504 * 109.46915 * 240.00395 * 8 6 4 12 12 C 1.50703 * 109.47083 * 120.00244 * 2 1 3 13 13 O 1.20821 * 120.00182 * 119.99592 * 12 2 1 14 14 O 1.34233 * 119.99843 * 300.00083 * 12 2 1 15 15 C 1.45198 * 116.99895 * 180.02562 * 14 12 2 16 16 H 1.08993 * 110.43802 * 328.91133 * 15 14 12 17 17 C 1.54861 * 110.46819 * 206.22932 * 15 14 12 18 18 C 1.54480 * 101.66110 * 216.51449 * 17 15 14 19 19 N 1.46760 * 105.54782 * 25.43666 * 18 17 15 20 20 C 1.46510 * 124.34729 * 162.95825 * 19 18 17 21 21 C 1.52996 * 117.49706 * 188.61707 * 20 19 18 22 22 C 1.52995 * 60.00292 * 252.51425 * 21 20 19 23 23 C 1.34415 * 111.30303 * 342.93897 * 19 18 17 24 24 O 1.21284 * 124.94104 * 180.39099 * 23 19 18 25 25 H 1.08997 * 109.46867 * 59.99786 * 1 2 3 26 26 H 1.09003 * 109.46698 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47053 * 299.99594 * 1 2 3 28 28 H 0.96998 * 119.99363 * 180.02562 * 7 6 4 29 29 H 1.08997 * 111.03764 * 98.42181 * 17 15 14 30 30 H 1.09000 * 110.99735 * 334.59075 * 17 15 14 31 31 H 1.09002 * 110.24746 * 266.39097 * 18 17 15 32 32 H 1.09002 * 110.24236 * 144.47820 * 18 17 15 33 33 H 1.08994 * 115.54852 * 334.33069 * 20 19 18 34 34 H 1.09003 * 117.49927 * 0.02562 * 21 20 19 35 35 H 1.08998 * 117.49660 * 145.02064 * 21 20 19 36 36 H 1.08999 * 117.50153 * 252.50953 * 22 21 20 37 37 H 1.09002 * 117.49755 * 107.49230 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 3.1484 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 6 2.0324 -0.7105 1.2305 13 8 2.7270 -1.6929 1.1196 14 8 1.7081 -0.2519 2.4496 15 6 2.2277 -0.9858 3.5896 16 1 2.3301 -2.0434 3.3469 17 6 1.3079 -0.7958 4.8209 18 6 2.3352 -0.7477 5.9736 19 7 3.5878 -0.2845 5.3651 20 6 4.7256 0.2481 6.1190 21 6 5.8721 0.8719 5.3208 22 6 6.0613 -0.4880 5.9959 23 6 3.5573 -0.4120 4.0274 24 8 4.4636 -0.1106 3.2800 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7090 1.1614 -3.4844 29 1 0.6303 -1.6416 4.9374 30 1 0.7532 0.1401 4.7534 31 1 2.4686 -1.7412 6.4018 32 1 2.0074 -0.0473 6.7419 33 1 4.4832 0.6930 7.0841 34 1 5.7797 0.8865 4.2348 35 1 6.3842 1.7277 5.7606 36 1 6.6979 -0.5269 6.8798 37 1 6.0935 -1.3683 5.3540 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330231948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:53 Heat of formation + Delta-G solvation = -105.757043 kcal Electronic energy + Delta-G solvation = -20737.045088 eV Core-core repulsion = 17479.922344 eV Total energy + Delta-G solvation = -3257.122744 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.19238 -40.90785 -37.93199 -37.76939 -36.62442 -35.96458 -32.76167 -31.42737 -28.47521 -27.31028 -25.33881 -23.99359 -23.50280 -22.79741 -21.85224 -20.38160 -18.76190 -18.49095 -18.15462 -17.60229 -17.10959 -16.75747 -16.31569 -16.08272 -15.50683 -14.90933 -14.85181 -14.59889 -14.49934 -14.08852 -13.59528 -13.43432 -13.17557 -13.01491 -12.85065 -12.74497 -12.62744 -12.38969 -12.30542 -12.25786 -12.09893 -11.82515 -11.41596 -11.14681 -11.09365 -10.56512 -10.52126 -9.62602 -8.23273 -6.36600 1.04054 1.36381 1.38923 1.40094 1.53456 1.67933 2.04970 2.42190 2.81915 3.06200 3.15724 3.35754 3.64894 3.86142 3.92267 3.94479 4.06543 4.14839 4.43369 4.57946 4.65391 4.71566 4.72153 4.86263 4.89474 4.95354 4.97521 5.03584 5.22792 5.33925 5.42489 5.60272 5.65603 5.86339 5.90945 6.07204 6.69197 6.91451 6.98807 7.31953 8.83680 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.004725 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.244465 B = 5924.208895 C = 6434.628350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 H 0.043 0.957 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.965 3.035 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.274 1.274 12 C 0.473 3.527 13 O -0.537 6.537 14 O -0.340 6.340 15 C 0.034 3.966 16 H 0.105 0.895 17 C -0.111 4.111 18 C 0.107 3.893 19 N -0.587 5.587 20 C 0.087 3.913 21 C -0.215 4.215 22 C -0.184 4.184 23 C 0.489 3.511 24 O -0.559 6.559 25 H 0.078 0.922 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.269 0.731 29 H 0.134 0.866 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.127 0.873 33 H 0.180 0.820 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -1.070 22.841 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.032 3.968 3 H 0.060 0.940 4 C -0.578 4.578 5 H 0.070 0.930 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.790 3.210 9 H -0.204 1.204 10 H -0.191 1.191 11 H -0.199 1.199 12 C 0.318 3.682 13 O -0.426 6.426 14 O -0.256 6.256 15 C -0.024 4.024 16 H 0.123 0.877 17 C -0.149 4.149 18 C -0.014 4.014 19 N -0.320 5.320 20 C -0.016 4.016 21 C -0.252 4.252 22 C -0.222 4.222 23 C 0.276 3.724 24 O -0.438 6.438 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.145 0.855 33 H 0.197 0.803 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.405 -1.071 22.370 22.399 hybrid contribution 0.824 -0.513 -1.384 1.690 sum 1.228 -1.584 20.986 21.082 Atomic orbital electron populations 1.21551 0.93487 1.00264 1.02245 1.18704 0.96537 0.95647 0.85935 0.93961 1.21254 1.32686 1.13257 0.90617 0.92993 1.25649 0.94833 0.95678 1.01527 1.69964 1.36607 1.23261 1.24778 0.85403 0.78513 0.78417 0.78705 1.20439 1.19080 1.19894 1.24963 0.75848 0.82534 0.84858 1.90471 1.36928 1.28169 1.87013 1.86688 1.68692 1.55557 1.14691 1.23745 0.93885 0.97712 0.87093 0.87724 1.22971 0.97017 1.07372 0.87510 1.22528 0.79733 1.03179 0.95915 1.47742 1.17684 1.61350 1.05179 1.22043 0.80262 1.01748 0.97535 1.23653 1.02218 0.98176 1.01195 1.23366 1.00354 0.94886 1.03619 1.21505 0.89306 0.77989 0.83633 1.90643 1.42516 1.51739 1.58896 0.90308 0.94709 0.92844 0.92132 0.84829 0.87510 0.87800 0.85488 0.80285 0.89850 0.85874 0.84646 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.90 71.98 0.64 -5.03 16 2 C 0.05 2.79 2.74 -12.28 -0.03 2.76 16 3 H 0.04 2.48 8.14 -2.39 -0.02 2.46 16 4 C -0.54 -32.60 8.37 25.60 0.21 -32.39 16 5 H 0.05 3.32 6.76 -2.91 -0.02 3.30 16 6 C 0.02 1.32 5.30 84.66 0.45 1.77 16 7 N -0.91 -52.00 11.32 21.45 0.24 -51.75 16 8 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 9 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.47 24.37 7.24 71.24 0.52 24.89 16 13 O -0.54 -30.48 14.72 21.98 0.32 -30.16 16 14 O -0.34 -14.30 9.86 -48.67 -0.48 -14.78 16 15 C 0.03 1.13 3.22 30.67 0.10 1.23 16 16 H 0.11 3.62 7.25 -2.39 -0.02 3.61 16 17 C -0.11 -1.89 6.93 31.73 0.22 -1.67 16 18 C 0.11 1.31 7.34 86.83 0.64 1.95 16 19 N -0.59 -13.62 3.27 -794.03 -2.60 -16.22 16 20 C 0.09 1.64 6.88 44.99 0.31 1.95 16 21 C -0.21 -5.32 9.77 30.59 0.30 -5.03 16 22 C -0.18 -3.78 10.34 30.59 0.32 -3.46 16 23 C 0.49 17.44 7.56 87.90 0.66 18.10 16 24 O -0.56 -26.15 14.69 0.86 0.01 -26.14 16 25 H 0.08 4.09 6.07 -2.39 -0.01 4.07 16 26 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.05 2.19 8.11 -2.39 -0.02 2.17 16 28 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.11 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.18 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.08 3.01 5.30 -2.39 -0.01 3.00 16 35 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -81.17 312.54 4.93 -76.24 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.07 Total: 10.00 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.33 Total: 5.08 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -2.35 Total: -67.97 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -0.14 Total: -71.08 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -81.17 4.93 -76.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.521 kcal (2) G-P(sol) polarization free energy of solvation -81.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds