Wall clock time and date at job start Mon Mar 30 2020 00:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.46877 * 2 1 4 4 C 1.50698 * 109.47068 * 119.99732 * 2 1 3 5 5 H 1.08002 * 119.99724 * 119.99833 * 4 2 1 6 6 C 1.37879 * 120.00041 * 300.00540 * 4 2 1 7 7 N 1.31512 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99616 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47070 * 89.99857 * 8 6 4 10 10 H 1.48504 * 109.46750 * 209.99791 * 8 6 4 11 11 H 1.48493 * 109.47185 * 329.99324 * 8 6 4 12 12 C 1.50694 * 109.47448 * 240.00182 * 2 1 3 13 13 O 1.20823 * 119.99923 * 240.00217 * 12 2 1 14 14 O 1.34232 * 120.00355 * 59.99361 * 12 2 1 15 15 C 1.45193 * 117.00118 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.43594 * 31.09568 * 15 14 12 17 17 C 1.54632 * 110.48467 * 153.77749 * 15 14 12 18 18 C 1.54658 * 101.68797 * 93.66738 * 17 15 14 19 19 N 1.46759 * 105.38039 * 25.76378 * 18 17 15 20 20 C 1.46501 * 124.34949 * 162.85685 * 19 18 17 21 21 C 1.53000 * 117.50040 * 239.72960 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49639 * 21 20 19 23 23 C 1.34414 * 111.30515 * 342.59108 * 19 18 17 24 24 O 1.21280 * 124.94860 * 180.64721 * 23 19 18 25 25 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47128 * 299.99715 * 1 2 3 27 27 H 1.09001 * 109.47106 * 60.00056 * 1 2 3 28 28 H 0.97001 * 120.00164 * 179.97438 * 7 6 4 29 29 H 1.09007 * 110.96832 * 211.99873 * 17 15 14 30 30 H 1.09004 * 110.96762 * 335.75856 * 17 15 14 31 31 H 1.09000 * 110.39762 * 266.74172 * 18 17 15 32 32 H 1.08995 * 110.18586 * 144.68645 * 18 17 15 33 33 H 1.09007 * 115.54992 * 25.39681 * 20 19 18 34 34 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 35 35 H 1.09002 * 117.49953 * 144.99785 * 21 20 19 36 36 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 37 37 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6304 -0.5439 4.4118 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5652 3.7122 12 6 2.0325 -0.7103 -1.2304 13 8 2.7271 -1.6927 -1.1195 14 8 1.7082 -0.2518 -2.4496 15 6 2.2269 -0.9863 -3.5896 16 1 2.3285 -2.0440 -3.3466 17 6 1.3086 -0.7963 -4.8191 18 6 1.9856 0.3960 -5.5345 19 7 3.3936 0.3484 -5.1231 20 6 4.4807 1.0466 -5.8138 21 6 5.6208 0.1962 -6.3774 22 6 5.8537 1.0616 -5.1374 23 6 3.5568 -0.4135 -4.0279 24 8 4.6161 -0.6132 -3.4720 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7087 1.1614 3.4844 29 1 1.3106 -1.6862 -5.4487 30 1 0.2946 -0.5394 -4.5126 31 1 1.5321 1.3356 -5.2189 32 1 1.9043 0.2815 -6.6154 33 1 4.1873 1.9323 -6.3774 34 1 5.5623 -0.8828 -6.2340 35 1 6.0776 0.5224 -7.3118 36 1 5.9484 0.5520 -4.1785 37 1 6.4634 1.9573 -5.2561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330231951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:59 Heat of formation + Delta-G solvation = -82.981837 kcal Electronic energy + Delta-G solvation = -20786.920261 eV Core-core repulsion = 17530.785124 eV Total energy + Delta-G solvation = -3256.135137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89484 -39.24802 -36.67250 -36.48183 -35.10460 -33.88067 -30.85171 -30.22887 -27.33103 -25.20200 -23.59825 -22.97236 -22.50220 -21.74441 -20.12687 -19.10844 -17.25165 -16.94782 -16.19558 -15.73367 -15.67823 -15.52182 -15.14682 -14.39830 -14.06771 -13.74956 -13.49487 -13.32090 -12.85126 -12.58920 -12.45009 -11.94558 -11.75417 -11.56388 -11.18159 -11.10011 -11.04023 -10.82933 -10.71785 -10.67123 -10.52605 -10.30391 -10.04012 -9.24455 -9.13319 -9.04288 -8.57308 -8.43646 -6.09399 -4.14424 2.32342 2.73545 3.28636 3.33086 3.38070 3.43393 3.57283 3.77387 4.26896 4.33259 4.43601 4.66068 4.72419 4.84070 4.91345 5.03700 5.23975 5.25280 5.44077 5.46831 5.56806 5.66913 5.70073 5.90341 6.14358 6.20365 6.62594 6.64663 6.83503 6.85885 7.00009 7.13767 7.42861 7.73927 7.95341 8.14161 8.17148 8.82049 8.94600 9.51064 10.98134 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.029578 B = 0.004799 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.418471 B = 5832.994586 C = 6282.943707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.461 3.539 13 O -0.499 6.499 14 O -0.344 6.344 15 C 0.052 3.948 16 H 0.113 0.887 17 C -0.129 4.129 18 C 0.108 3.892 19 N -0.592 5.592 20 C 0.081 3.919 21 C -0.192 4.192 22 C -0.191 4.191 23 C 0.508 3.492 24 O -0.501 6.501 25 H 0.032 0.968 26 H 0.097 0.903 27 H 0.023 0.977 28 H 0.263 0.737 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 1.528 -19.016 19.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.549 4.549 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.196 1.196 12 C 0.304 3.696 13 O -0.384 6.384 14 O -0.262 6.262 15 C -0.008 4.008 16 H 0.131 0.869 17 C -0.166 4.166 18 C -0.015 4.015 19 N -0.326 5.326 20 C -0.023 4.023 21 C -0.230 4.230 22 C -0.228 4.228 23 C 0.294 3.706 24 O -0.375 6.375 25 H 0.051 0.949 26 H 0.115 0.885 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.150 0.850 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.842 1.244 -18.574 18.635 hybrid contribution 0.400 -0.433 0.644 0.873 sum 1.242 0.811 -17.930 17.992 Atomic orbital electron populations 1.21740 0.95492 1.00090 1.01763 1.18778 0.94876 0.96938 0.85223 0.91849 1.21140 1.31829 1.13278 0.88702 0.90584 1.24928 0.94872 0.95036 0.99122 1.69876 1.36580 1.22843 1.23859 0.86363 0.78513 0.80202 0.81653 1.20502 1.21125 1.19640 1.25541 0.76790 0.83527 0.83710 1.90534 1.35339 1.26476 1.86044 1.86790 1.69249 1.55383 1.14761 1.23126 0.91758 0.99063 0.86835 0.86893 1.22781 1.00551 0.98945 0.94369 1.22147 0.79856 0.99605 0.99871 1.47612 1.07740 1.48487 1.28763 1.21511 0.82593 0.97348 1.00834 1.23352 1.02688 0.98926 0.98074 1.23777 0.96443 1.02540 1.00065 1.21199 0.90935 0.78660 0.79812 1.90641 1.30127 1.59598 1.57142 0.94892 0.88494 0.95790 0.92701 0.88470 0.87424 0.90254 0.89978 0.85267 0.88815 0.88265 0.85014 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.90 37.16 0.33 -2.79 16 2 C 0.06 1.58 2.74 -92.92 -0.25 1.32 16 3 H 0.06 1.72 8.14 -51.92 -0.42 1.29 16 4 C -0.51 -14.68 8.37 -34.44 -0.29 -14.97 16 5 H 0.08 2.29 6.76 -52.49 -0.35 1.94 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.46 11.20 7.24 36.00 0.26 11.46 16 13 O -0.50 -13.37 14.73 -18.75 -0.28 -13.65 16 14 O -0.34 -6.89 9.85 -39.26 -0.39 -7.28 16 15 C 0.05 0.85 3.22 -26.74 -0.09 0.76 16 16 H 0.11 1.97 7.26 -51.93 -0.38 1.59 16 17 C -0.13 -1.32 6.93 -25.00 -0.17 -1.49 16 18 C 0.11 1.02 7.36 -3.03 -0.02 1.00 16 19 N -0.59 -7.81 3.27 -164.69 -0.54 -8.35 16 20 C 0.08 0.91 6.88 -67.89 -0.47 0.45 16 21 C -0.19 -2.06 10.34 -26.73 -0.28 -2.34 16 22 C -0.19 -2.43 9.78 -26.69 -0.26 -2.69 16 23 C 0.51 8.91 7.56 -10.86 -0.08 8.83 16 24 O -0.50 -10.76 14.69 5.56 0.08 -10.68 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.13 2.21 5.29 -51.93 -0.27 1.94 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -33.53 312.53 -7.32 -40.85 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.10 Total: 0.80 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.41 Total: 1.17 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.09 Total: -32.78 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.58 Total: -31.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.53 -7.32 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.135 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds