Wall clock time and date at job start Mon Mar 30 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09008 * 109.46877 * 2 1 4 4 C 1.50698 * 109.47068 * 119.99732 * 2 1 3 5 5 H 1.08002 * 119.99724 * 119.99833 * 4 2 1 6 6 C 1.37879 * 120.00041 * 300.00540 * 4 2 1 7 7 N 1.31512 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99616 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47070 * 89.99857 * 8 6 4 10 10 H 1.48504 * 109.46750 * 209.99791 * 8 6 4 11 11 H 1.48493 * 109.47185 * 329.99324 * 8 6 4 12 12 C 1.50694 * 109.47448 * 240.00182 * 2 1 3 13 13 O 1.20823 * 119.99923 * 240.00217 * 12 2 1 14 14 O 1.34232 * 120.00355 * 59.99361 * 12 2 1 15 15 C 1.45193 * 117.00118 * 180.02562 * 14 12 2 16 16 H 1.08998 * 110.43594 * 31.09568 * 15 14 12 17 17 C 1.54632 * 110.48467 * 153.77749 * 15 14 12 18 18 C 1.54658 * 101.68797 * 93.66738 * 17 15 14 19 19 N 1.46759 * 105.38039 * 25.76378 * 18 17 15 20 20 C 1.46501 * 124.34949 * 162.85685 * 19 18 17 21 21 C 1.53000 * 117.50040 * 239.72960 * 20 19 18 22 22 C 1.53002 * 60.02940 * 252.49639 * 21 20 19 23 23 C 1.34414 * 111.30515 * 342.59108 * 19 18 17 24 24 O 1.21280 * 124.94860 * 180.64721 * 23 19 18 25 25 H 1.08998 * 109.47023 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47128 * 299.99715 * 1 2 3 27 27 H 1.09001 * 109.47106 * 60.00056 * 1 2 3 28 28 H 0.97001 * 120.00164 * 179.97438 * 7 6 4 29 29 H 1.09007 * 110.96832 * 211.99873 * 17 15 14 30 30 H 1.09004 * 110.96762 * 335.75856 * 17 15 14 31 31 H 1.09000 * 110.39762 * 266.74172 * 18 17 15 32 32 H 1.08995 * 110.18586 * 144.68645 * 18 17 15 33 33 H 1.09007 * 115.54992 * 25.39681 * 20 19 18 34 34 H 1.09002 * 117.49833 * 359.97438 * 21 20 19 35 35 H 1.09002 * 117.49953 * 144.99785 * 21 20 19 36 36 H 1.09000 * 117.49996 * 107.50493 * 22 21 20 37 37 H 1.08999 * 117.49664 * 252.51862 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6304 -0.5439 4.4118 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5652 3.7122 12 6 2.0325 -0.7103 -1.2304 13 8 2.7271 -1.6927 -1.1195 14 8 1.7082 -0.2518 -2.4496 15 6 2.2269 -0.9863 -3.5896 16 1 2.3285 -2.0440 -3.3466 17 6 1.3086 -0.7963 -4.8191 18 6 1.9856 0.3960 -5.5345 19 7 3.3936 0.3484 -5.1231 20 6 4.4807 1.0466 -5.8138 21 6 5.6208 0.1962 -6.3774 22 6 5.8537 1.0616 -5.1374 23 6 3.5568 -0.4135 -4.0279 24 8 4.6161 -0.6132 -3.4720 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7087 1.1614 3.4844 29 1 1.3106 -1.6862 -5.4487 30 1 0.2946 -0.5394 -4.5126 31 1 1.5321 1.3356 -5.2189 32 1 1.9043 0.2815 -6.6154 33 1 4.1873 1.9323 -6.3774 34 1 5.5623 -0.8828 -6.2340 35 1 6.0776 0.5224 -7.3118 36 1 5.9484 0.5520 -4.1785 37 1 6.4634 1.9573 -5.2561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330231951.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:58 Heat of formation + Delta-G solvation = -104.580734 kcal Electronic energy + Delta-G solvation = -20787.856860 eV Core-core repulsion = 17530.785124 eV Total energy + Delta-G solvation = -3257.071735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.22061 -40.89776 -37.96090 -37.80398 -36.49792 -35.96836 -32.75844 -31.47071 -28.46029 -27.30508 -25.32557 -24.04738 -23.46227 -22.84613 -21.91298 -20.35183 -18.83368 -18.32980 -18.18434 -17.47840 -17.08035 -16.65845 -16.58227 -16.08692 -15.38413 -14.97264 -14.85658 -14.62090 -14.54407 -14.12637 -13.61705 -13.50101 -13.03915 -12.91254 -12.83946 -12.70809 -12.63799 -12.38452 -12.31016 -12.24410 -12.08345 -11.85603 -11.41369 -11.15337 -11.08730 -10.58459 -10.56189 -9.60629 -8.23389 -6.36570 0.92582 1.35137 1.39638 1.40761 1.52332 1.73742 2.06283 2.42295 2.81834 3.06280 3.14009 3.34798 3.65440 3.85807 3.94746 4.02363 4.06790 4.12045 4.48656 4.57890 4.65835 4.71878 4.73397 4.86544 4.89167 4.96659 4.97799 5.04814 5.22803 5.31849 5.41387 5.61064 5.65780 5.86782 5.91680 6.07677 6.68890 6.92679 6.94901 7.32033 8.83120 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.029578 B = 0.004799 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.418471 B = 5832.994586 C = 6282.943707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 H 0.046 0.954 4 C -0.543 4.543 5 H 0.051 0.949 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.268 1.268 11 H -0.277 1.277 12 C 0.467 3.533 13 O -0.534 6.534 14 O -0.335 6.335 15 C 0.036 3.964 16 H 0.095 0.905 17 C -0.113 4.113 18 C 0.103 3.897 19 N -0.582 5.582 20 C 0.080 3.920 21 C -0.173 4.173 22 C -0.219 4.219 23 C 0.489 3.511 24 O -0.558 6.558 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.174 0.826 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 2.501 -21.508 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.034 3.966 3 H 0.064 0.936 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.192 1.192 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.422 6.422 14 O -0.252 6.252 15 C -0.023 4.023 16 H 0.113 0.887 17 C -0.150 4.150 18 C -0.018 4.018 19 N -0.315 5.315 20 C -0.023 4.023 21 C -0.212 4.212 22 C -0.256 4.256 23 C 0.276 3.724 24 O -0.437 6.437 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.109 0.891 32 H 0.147 0.853 33 H 0.191 0.809 34 H 0.089 0.911 35 H 0.154 0.846 36 H 0.102 0.898 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.593 2.261 -21.126 21.255 hybrid contribution 0.855 -0.697 1.301 1.706 sum 0.262 1.564 -19.824 19.888 Atomic orbital electron populations 1.21553 0.93429 1.00222 1.02364 1.18701 0.96557 0.95675 0.85644 0.93635 1.21230 1.32786 1.13327 0.90686 0.93088 1.25607 0.94810 0.95675 1.01420 1.69943 1.36444 1.23201 1.24850 0.85485 0.78415 0.78709 0.78637 1.20135 1.19222 1.20166 1.25101 0.76048 0.82739 0.84923 1.90512 1.36745 1.27995 1.86930 1.86693 1.68732 1.55387 1.14417 1.23639 0.93651 0.97617 0.87385 0.88737 1.22965 0.99930 1.00959 0.91169 1.22555 0.77116 0.99659 1.02466 1.47829 1.10046 1.46452 1.27124 1.22025 0.81633 0.98562 1.00048 1.23367 1.02003 0.97428 0.98363 1.23673 0.99044 1.03926 0.98985 1.21500 0.90439 0.79515 0.80972 1.90631 1.31980 1.61812 1.59239 0.94886 0.90313 0.92578 0.92106 0.85282 0.85638 0.89064 0.85336 0.80896 0.91054 0.84601 0.89766 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.90 71.98 0.64 -4.89 16 2 C 0.05 2.85 2.74 -12.29 -0.03 2.82 16 3 H 0.05 2.57 8.14 -2.38 -0.02 2.55 16 4 C -0.54 -32.27 8.37 25.60 0.21 -32.06 16 5 H 0.05 3.23 6.76 -2.91 -0.02 3.21 16 6 C 0.03 1.42 5.30 84.66 0.45 1.87 16 7 N -0.91 -51.08 11.32 21.45 0.24 -50.84 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 C 0.47 23.55 7.24 71.23 0.52 24.06 16 13 O -0.53 -30.19 14.73 21.97 0.32 -29.86 16 14 O -0.34 -13.52 9.85 -51.44 -0.51 -14.03 16 15 C 0.04 1.18 3.22 30.59 0.10 1.28 16 16 H 0.09 3.42 7.26 -2.39 -0.02 3.41 16 17 C -0.11 -1.92 6.93 31.71 0.22 -1.70 16 18 C 0.10 1.48 7.36 86.89 0.64 2.12 16 19 N -0.58 -14.15 3.27 -793.56 -2.60 -16.75 16 20 C 0.08 1.59 6.88 45.01 0.31 1.90 16 21 C -0.17 -3.39 10.34 30.60 0.32 -3.07 16 22 C -0.22 -5.53 9.78 30.62 0.30 -5.23 16 23 C 0.49 17.49 7.56 87.90 0.66 18.15 16 24 O -0.56 -25.67 14.69 -3.03 -0.04 -25.71 16 25 H 0.03 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.08 4.00 6.07 -2.39 -0.01 3.98 16 27 H 0.06 2.21 8.11 -2.39 -0.02 2.19 16 28 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.13 1.77 8.11 -2.39 -0.02 1.75 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.17 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 3.06 5.29 -2.39 -0.01 3.05 16 37 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -78.93 312.53 4.85 -74.08 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.07 Total: 10.53 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.33 Total: 5.24 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -2.35 Total: -67.59 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -0.23 Total: -69.61 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.93 4.85 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330231951.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.503 kcal (2) G-P(sol) polarization free energy of solvation -78.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds