Wall clock time and date at job start Mon Mar 30 2020 00:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.53000 * 109.47240 * 120.00449 * 2 1 3 5 5 C 1.50704 * 109.46910 * 184.99987 * 4 2 1 6 6 C 1.35449 * 126.77271 * 89.70900 * 5 4 2 7 7 C 1.41384 * 103.98262 * 179.90676 * 6 5 4 8 8 N 1.30177 * 106.39279 * 0.36394 * 7 6 5 9 9 O 1.20921 * 111.60789 * 359.76360 * 8 7 6 10 10 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 11 11 C 1.34230 * 116.99836 * 90.00373 * 10 2 1 12 12 O 1.20833 * 119.99930 * 359.97438 * 11 10 2 13 13 C 1.50697 * 120.00262 * 180.27336 * 11 10 2 14 14 C 1.52996 * 109.47491 * 179.72204 * 13 11 10 15 15 C 1.53003 * 109.47301 * 179.97438 * 14 13 11 16 16 C 1.50693 * 109.47293 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00333 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00026 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00350 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47404 * 120.00013 * 20 18 16 23 23 H 1.48508 * 109.47014 * 240.00020 * 20 18 16 24 24 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 26 26 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 27 27 H 1.09003 * 109.46848 * 304.99581 * 4 2 1 28 28 H 1.08999 * 109.47472 * 64.99928 * 4 2 1 29 29 H 1.07998 * 128.01279 * 359.97438 * 6 5 4 30 30 H 1.07998 * 126.80341 * 180.15969 * 7 6 5 31 31 H 1.09004 * 109.46801 * 299.72165 * 13 11 10 32 32 H 1.09000 * 109.47461 * 59.71633 * 13 11 10 33 33 H 1.09004 * 109.47066 * 299.99799 * 14 13 11 34 34 H 1.08994 * 109.47405 * 59.99969 * 14 13 11 35 35 H 1.08996 * 109.47187 * 300.00268 * 15 14 13 36 36 H 1.09008 * 109.46785 * 59.99617 * 15 14 13 37 37 H 0.97000 * 120.00497 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 6 4.2609 0.3654 1.9098 7 6 5.6050 -0.0097 1.6823 8 7 5.5668 -1.1170 0.9990 9 8 4.4299 -1.4687 0.7841 10 8 2.0139 -0.6845 -1.1856 11 6 2.2170 0.0641 -2.2811 12 8 1.9973 1.2519 -2.2505 13 6 2.7127 -0.5779 -3.5512 14 6 2.8520 0.4873 -4.6405 15 6 3.3558 -0.1645 -5.9299 16 6 3.4924 0.8846 -7.0030 17 1 3.2451 1.9136 -6.7869 18 6 3.9342 0.5313 -8.2603 19 7 4.2359 -0.7215 -8.5233 20 14 4.1042 1.8319 -9.5903 21 1 3.7042 3.1536 -9.0442 22 1 5.5160 1.8912 -10.0472 23 1 3.2270 1.4846 -10.7372 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.8928 1.2322 2.4384 30 1 6.4884 0.5195 2.0078 31 1 3.6826 -1.0410 -3.3697 32 1 2.0021 -1.3383 -3.8753 33 1 1.8820 0.9504 -4.8221 34 1 3.5626 1.2476 -4.3165 35 1 4.3258 -0.6272 -5.7480 36 1 2.6455 -0.9251 -6.2541 37 1 4.5471 -0.9701 -9.4078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345967668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:03 Heat of formation + Delta-G solvation = -50.209565 kcal Electronic energy + Delta-G solvation = -19831.956057 eV Core-core repulsion = 16577.242033 eV Total energy + Delta-G solvation = -3254.714024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.06252 -40.41181 -37.10772 -34.59297 -34.28951 -33.76629 -32.12055 -31.43399 -28.12057 -27.42772 -24.42007 -23.65320 -22.54111 -21.46820 -20.72327 -19.81237 -17.74186 -17.64471 -17.49919 -16.45478 -16.17457 -15.78128 -15.29641 -14.42416 -14.28013 -14.08528 -13.85746 -13.56823 -13.32348 -12.79955 -12.47258 -12.25230 -12.20338 -11.87223 -11.52512 -11.42563 -11.22967 -10.84108 -10.71408 -10.66885 -10.61107 -10.54125 -10.18576 -9.72893 -9.56211 -9.38283 -9.06436 -8.33367 -5.98416 -4.00328 1.27437 2.10508 2.49092 2.76232 2.89569 3.33413 3.40731 3.46003 4.18636 4.23012 4.42817 4.48653 4.65675 4.79702 4.84623 4.95509 5.06038 5.21939 5.37208 5.37716 5.39971 5.50650 5.59535 5.64225 5.72371 5.82566 5.87278 6.13507 6.58388 6.63242 6.83219 7.08568 7.68499 7.80177 8.01084 8.02266 8.10635 8.44160 9.06611 9.63783 11.13091 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.003620 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.606453 B = 7733.848925 C = 8343.742284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 H 0.089 0.911 4 C -0.038 4.038 5 C -0.026 4.026 6 C -0.236 4.236 7 C -0.014 4.014 8 N -0.364 5.364 9 O 0.110 5.890 10 O -0.354 6.354 11 C 0.462 3.538 12 O -0.508 6.508 13 C -0.113 4.113 14 C -0.099 4.099 15 C 0.020 3.980 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.171 0.829 30 H 0.190 0.810 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 -0.660 23.830 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.028 3.972 3 H 0.107 0.893 4 C -0.076 4.076 5 C -0.090 4.090 6 C -0.258 4.258 7 C -0.192 4.192 8 N -0.065 5.065 9 O 0.042 5.958 10 O -0.272 6.272 11 C 0.305 3.695 12 O -0.395 6.395 13 C -0.150 4.150 14 C -0.136 4.136 15 C -0.017 4.017 16 C -0.557 4.557 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.189 0.811 30 H 0.207 0.793 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.470 -1.222 23.224 23.682 hybrid contribution -0.160 1.521 -0.284 1.555 sum -4.629 0.299 22.940 23.405 Atomic orbital electron populations 1.22182 0.93371 1.03459 1.03565 1.22640 0.94790 0.97367 0.82403 0.89314 1.20380 0.84618 1.04585 0.97985 1.24393 0.94938 0.91817 0.97884 1.22591 0.92626 1.02692 1.07885 1.25062 0.99231 0.94789 1.00089 1.73928 0.99795 1.15964 1.16814 1.84873 1.10407 1.43055 1.57462 1.86648 1.77331 1.42731 1.20456 1.24430 0.73626 0.86189 0.85208 1.90627 1.47944 1.16889 1.84055 1.21705 1.03151 1.01359 0.88807 1.21569 1.01686 0.96002 0.94393 1.19134 0.96427 0.96101 0.90017 1.21271 1.43986 0.94771 0.95696 0.92515 1.25017 0.95479 0.95335 0.98642 1.69972 1.45515 1.16405 1.21651 0.86532 0.77673 0.81993 0.81800 1.19704 1.21013 1.21003 0.91119 0.90632 0.91236 0.86455 0.87897 0.81119 0.79279 0.88126 0.88006 0.92450 0.92559 0.96342 0.96315 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.55 37.16 0.35 -1.02 16 2 C 0.08 0.85 2.55 -26.73 -0.07 0.78 16 3 H 0.09 1.02 7.16 -51.93 -0.37 0.65 16 4 C -0.04 -0.27 5.50 -27.88 -0.15 -0.43 16 5 C -0.03 -0.27 6.52 -35.30 -0.23 -0.50 16 6 C -0.24 -2.19 11.09 -39.38 -0.44 -2.62 16 7 C -0.01 -0.14 12.17 -17.06 -0.21 -0.35 16 8 N -0.36 -4.99 12.07 30.36 0.37 -4.62 16 9 O 0.11 1.45 11.20 17.18 0.19 1.65 16 10 O -0.35 -4.86 9.64 -39.26 -0.38 -5.24 16 11 C 0.46 7.66 7.93 36.00 0.29 7.94 16 12 O -0.51 -9.62 15.20 -18.76 -0.29 -9.91 16 13 C -0.11 -1.94 5.81 -27.89 -0.16 -2.10 16 14 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 17 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 32 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -34.22 326.16 -6.16 -40.39 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -5.40 Total: -3.84 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.29 Total: -13.94 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 1.10 Total: -31.02 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.47 Total: -13.50 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.22 -6.16 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345967668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.820 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds