Wall clock time and date at job start Mon Mar 30 2020 00:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.53000 * 109.47240 * 120.00449 * 2 1 3 5 5 C 1.50704 * 109.46910 * 184.99987 * 4 2 1 6 6 C 1.35449 * 126.77271 * 89.70900 * 5 4 2 7 7 C 1.41384 * 103.98262 * 179.90676 * 6 5 4 8 8 N 1.30177 * 106.39279 * 0.36394 * 7 6 5 9 9 O 1.20921 * 111.60789 * 359.76360 * 8 7 6 10 10 O 1.45202 * 109.46662 * 240.00181 * 2 1 3 11 11 C 1.34230 * 116.99836 * 90.00373 * 10 2 1 12 12 O 1.20833 * 119.99930 * 359.97438 * 11 10 2 13 13 C 1.50697 * 120.00262 * 180.27336 * 11 10 2 14 14 C 1.52996 * 109.47491 * 179.72204 * 13 11 10 15 15 C 1.53003 * 109.47301 * 179.97438 * 14 13 11 16 16 C 1.50693 * 109.47293 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00333 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00026 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00350 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47404 * 120.00013 * 20 18 16 23 23 H 1.48508 * 109.47014 * 240.00020 * 20 18 16 24 24 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47394 * 299.99340 * 1 2 3 26 26 H 1.09001 * 109.47630 * 60.00043 * 1 2 3 27 27 H 1.09003 * 109.46848 * 304.99581 * 4 2 1 28 28 H 1.08999 * 109.47472 * 64.99928 * 4 2 1 29 29 H 1.07998 * 128.01279 * 359.97438 * 6 5 4 30 30 H 1.07998 * 126.80341 * 180.15969 * 7 6 5 31 31 H 1.09004 * 109.46801 * 299.72165 * 13 11 10 32 32 H 1.09000 * 109.47461 * 59.71633 * 13 11 10 33 33 H 1.09004 * 109.47066 * 299.99799 * 14 13 11 34 34 H 1.08994 * 109.47405 * 59.99969 * 14 13 11 35 35 H 1.08996 * 109.47187 * 300.00268 * 15 14 13 36 36 H 1.09008 * 109.46785 * 59.99617 * 15 14 13 37 37 H 0.97000 * 120.00497 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 6 4.2609 0.3654 1.9098 7 6 5.6050 -0.0097 1.6823 8 7 5.5668 -1.1170 0.9990 9 8 4.4299 -1.4687 0.7841 10 8 2.0139 -0.6845 -1.1856 11 6 2.2170 0.0641 -2.2811 12 8 1.9973 1.2519 -2.2505 13 6 2.7127 -0.5779 -3.5512 14 6 2.8520 0.4873 -4.6405 15 6 3.3558 -0.1645 -5.9299 16 6 3.4924 0.8846 -7.0030 17 1 3.2451 1.9136 -6.7869 18 6 3.9342 0.5313 -8.2603 19 7 4.2359 -0.7215 -8.5233 20 14 4.1042 1.8319 -9.5903 21 1 3.7042 3.1536 -9.0442 22 1 5.5160 1.8912 -10.0472 23 1 3.2270 1.4846 -10.7372 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2055 29 1 3.8928 1.2322 2.4384 30 1 6.4884 0.5195 2.0078 31 1 3.6826 -1.0410 -3.3697 32 1 2.0021 -1.3383 -3.8753 33 1 1.8820 0.9504 -4.8221 34 1 3.5626 1.2476 -4.3165 35 1 4.3258 -0.6272 -5.7480 36 1 2.6455 -0.9251 -6.2541 37 1 4.5471 -0.9701 -9.4078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345967668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:03 Heat of formation + Delta-G solvation = -70.283301 kcal Electronic energy + Delta-G solvation = -19832.826520 eV Core-core repulsion = 16577.242033 eV Total energy + Delta-G solvation = -3255.584487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.88905 -41.62797 -38.24666 -36.19364 -35.44311 -34.60460 -34.09075 -32.27565 -29.97170 -28.09071 -26.26409 -24.45916 -23.75154 -22.54214 -21.87489 -21.32777 -18.92134 -18.58864 -18.43307 -18.35202 -17.45938 -17.05380 -16.46388 -16.12792 -15.66394 -15.00677 -14.64344 -14.49588 -14.34593 -14.25731 -13.81792 -13.62162 -13.26061 -13.09956 -12.94396 -12.69240 -12.58004 -12.43091 -12.26971 -12.03590 -11.76517 -11.63945 -11.55784 -11.43232 -11.39164 -11.14876 -10.56221 -10.34158 -8.21278 -6.31808 0.49052 1.18019 1.34351 1.39569 1.39750 1.53389 1.67838 2.19561 2.41127 3.12058 3.48000 3.53579 3.68691 3.80039 3.97408 4.07299 4.10925 4.14850 4.20517 4.44050 4.57018 4.63841 4.75885 4.77617 4.86335 4.89268 4.91532 5.01722 5.12212 5.16073 5.24070 5.44252 5.51593 5.69760 5.83853 6.24127 6.75494 6.83860 7.29963 7.37170 8.90693 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.003620 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.606453 B = 7733.848925 C = 8343.742284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.029 4.029 5 C -0.038 4.038 6 C -0.233 4.233 7 C -0.018 4.018 8 N -0.407 5.407 9 O 0.080 5.920 10 O -0.354 6.354 11 C 0.470 3.530 12 O -0.536 6.536 13 C -0.109 4.109 14 C -0.084 4.084 15 C 0.024 3.976 16 C -0.547 4.547 17 H 0.054 0.946 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.275 1.275 24 H 0.082 0.918 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.162 0.838 28 H 0.115 0.885 29 H 0.204 0.796 30 H 0.214 0.786 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.051 0.949 34 H 0.044 0.956 35 H -0.001 1.001 36 H 0.005 0.995 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.392 0.178 25.308 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 H 0.093 0.907 4 C -0.067 4.067 5 C -0.102 4.102 6 C -0.254 4.254 7 C -0.196 4.196 8 N -0.112 5.112 9 O 0.016 5.984 10 O -0.271 6.271 11 C 0.315 3.685 12 O -0.426 6.426 13 C -0.146 4.146 14 C -0.122 4.122 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.073 0.927 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.200 1.200 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.062 0.938 27 H 0.179 0.821 28 H 0.133 0.867 29 H 0.221 0.779 30 H 0.231 0.769 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.018 0.982 36 H 0.023 0.977 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.476 -0.407 24.723 25.326 hybrid contribution 0.137 1.255 -0.646 1.418 sum -5.340 0.848 24.077 24.677 Atomic orbital electron populations 1.22190 0.91517 1.04419 1.03977 1.23065 0.96309 0.96869 0.81771 0.90684 1.20608 0.82685 1.05516 0.97866 1.25052 0.96042 0.91596 0.97460 1.23051 0.91748 1.03198 1.07387 1.25670 1.01062 0.94033 0.98844 1.73920 1.00546 1.17852 1.18924 1.84815 1.10771 1.44294 1.58489 1.86611 1.76993 1.42652 1.20824 1.24015 0.73109 0.85623 0.85729 1.90616 1.49377 1.17957 1.84679 1.21501 1.04365 1.00278 0.88491 1.21251 1.00604 0.96513 0.93811 1.19021 0.95154 0.95377 0.91727 1.21686 1.44440 0.95305 0.97017 0.92737 1.25927 0.94853 0.97648 1.01116 1.70082 1.46018 1.18375 1.22537 0.85419 0.77981 0.79168 0.78607 1.19012 1.20223 1.20013 0.89876 0.87283 0.93757 0.82052 0.86698 0.77915 0.76895 0.87393 0.86161 0.92987 0.93729 0.98245 0.97701 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.55 71.98 0.69 -1.56 16 2 C 0.07 1.37 2.55 30.59 0.08 1.44 16 3 H 0.08 1.62 7.16 -2.39 -0.02 1.60 16 4 C -0.03 -0.33 5.50 29.85 0.16 -0.17 16 5 C -0.04 -0.71 6.52 25.04 0.16 -0.54 16 6 C -0.23 -3.79 11.09 22.40 0.25 -3.54 16 7 C -0.02 -0.38 12.17 85.71 1.04 0.67 16 8 N -0.41 -11.21 12.07 -59.25 -0.72 -11.93 16 9 O 0.08 2.11 11.20 71.66 0.80 2.91 16 10 O -0.35 -9.36 9.64 -51.41 -0.50 -9.86 16 11 C 0.47 15.49 7.93 71.23 0.56 16.05 16 12 O -0.54 -20.36 15.20 21.94 0.33 -20.02 16 13 C -0.11 -3.77 5.81 29.85 0.17 -3.59 16 14 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 17 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 18 C 0.00 0.15 5.46 84.65 0.46 0.61 16 19 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 20 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 30 H 0.21 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 32 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 33 H 0.05 2.31 8.10 -2.38 -0.02 2.29 16 34 H 0.04 2.03 8.10 -2.39 -0.02 2.01 16 35 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -75.91 326.16 7.39 -68.52 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.05 Total: 4.42 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.10 Total: -24.65 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -0.43 Total: -68.57 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: 0.64 Total: -26.97 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -75.91 7.39 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345967668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.759 kcal (2) G-P(sol) polarization free energy of solvation -75.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds