Wall clock time and date at job start Mon Mar 30 2020 00:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47427 * 2 1 4 4 C 1.53005 * 109.46770 * 240.00227 * 2 1 3 5 5 C 1.50696 * 109.46973 * 174.99553 * 4 2 1 6 6 C 1.35459 * 126.77504 * 90.00145 * 5 4 2 7 7 C 1.41376 * 103.98643 * 179.97438 * 6 5 4 8 8 N 1.30179 * 106.39598 * 0.02562 * 7 6 5 9 9 O 1.20917 * 111.60714 * 359.72400 * 8 7 6 10 10 O 1.45198 * 109.47350 * 120.00440 * 2 1 3 11 11 C 1.34221 * 116.99903 * 269.99854 * 10 2 1 12 12 O 1.20826 * 120.00367 * 359.97438 * 11 10 2 13 13 C 1.50706 * 120.00092 * 180.02562 * 11 10 2 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47276 * 59.99363 * 20 18 16 22 22 H 1.48496 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99694 * 20 18 16 24 24 H 1.08998 * 109.46762 * 299.99499 * 1 2 3 25 25 H 1.08996 * 109.47318 * 59.99471 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47522 * 294.99772 * 4 2 1 28 28 H 1.09006 * 109.47210 * 55.00031 * 4 2 1 29 29 H 1.07996 * 128.00448 * 359.97438 * 6 5 4 30 30 H 1.08003 * 126.80293 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46953 * 299.99668 * 13 11 10 32 32 H 1.09000 * 109.47318 * 59.99266 * 13 11 10 33 33 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 34 34 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 35 35 H 1.08992 * 109.47554 * 299.99696 * 15 14 13 36 36 H 1.08996 * 109.47261 * 60.00229 * 15 14 13 37 37 H 0.97007 * 119.99539 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 6 4.4393 -1.4779 -0.7794 7 6 5.6933 -0.9217 -1.1215 8 7 5.4424 0.1655 -1.7920 9 8 4.2535 0.3498 -1.9128 10 8 2.0141 -0.6845 1.1855 11 6 2.2173 0.0638 2.2810 12 8 1.9984 1.2517 2.2503 13 6 2.7196 -0.5773 3.5490 14 6 2.8635 0.4887 4.6371 15 6 3.3728 -0.1623 5.9246 16 6 3.5151 0.8877 6.9961 17 1 3.2668 1.9164 6.7806 18 6 3.9625 0.5351 8.2518 19 7 4.2644 -0.7177 8.5144 20 14 4.1383 1.8365 9.5802 21 1 2.8177 2.4668 9.8336 22 1 4.6327 1.2048 10.8298 23 1 5.1036 2.8728 9.1334 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2058 28 1 1.6053 -0.2617 -2.1371 29 1 4.2424 -2.3816 -0.2219 30 1 6.6665 -1.3195 -0.8746 31 1 2.0107 -1.3375 3.8772 32 1 3.6886 -1.0403 3.3629 33 1 3.5721 1.2492 4.3091 34 1 1.8941 0.9513 4.8231 35 1 2.6639 -0.9226 6.2524 36 1 4.3420 -0.6252 5.7389 37 1 4.5788 -0.9658 9.3980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345967684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:05 Heat of formation + Delta-G solvation = -50.617537 kcal Electronic energy + Delta-G solvation = -19819.511599 eV Core-core repulsion = 16564.779884 eV Total energy + Delta-G solvation = -3254.731715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.06554 -40.43297 -37.12752 -34.50552 -34.32269 -33.82319 -32.14734 -31.44278 -28.15183 -27.41338 -24.43915 -23.63574 -22.53737 -21.46723 -20.73350 -19.84389 -17.73381 -17.65154 -17.55153 -16.46287 -16.17999 -15.75404 -15.22887 -14.48559 -14.43655 -14.15702 -13.67097 -13.49736 -13.34356 -12.88238 -12.47036 -12.26905 -12.15368 -11.90688 -11.50643 -11.47800 -11.23710 -10.82198 -10.72009 -10.70861 -10.60196 -10.58444 -10.20653 -9.75479 -9.53062 -9.40421 -9.11707 -8.35016 -6.00693 -4.02632 1.28074 2.14874 2.47043 2.73271 2.89123 3.34928 3.38625 3.42238 4.20518 4.26047 4.43379 4.46845 4.72256 4.80759 4.82848 4.97507 5.14778 5.25040 5.35461 5.38276 5.46943 5.52054 5.58842 5.59743 5.69736 5.85684 5.90121 6.09065 6.56419 6.59819 6.80013 7.05486 7.64993 7.76720 7.98549 8.00000 8.08602 8.41657 9.03763 9.61513 11.10716 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.003594 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.593026 B = 7789.519069 C = 8389.026436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 H 0.089 0.911 4 C -0.034 4.034 5 C -0.036 4.036 6 C -0.217 4.217 7 C -0.011 4.011 8 N -0.368 5.368 9 O 0.096 5.904 10 O -0.355 6.355 11 C 0.460 3.540 12 O -0.506 6.506 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.022 3.978 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.893 3.107 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.175 0.825 30 H 0.191 0.809 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.069 -4.534 -21.409 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.028 3.972 3 H 0.107 0.893 4 C -0.072 4.072 5 C -0.100 4.100 6 C -0.238 4.238 7 C -0.189 4.189 8 N -0.070 5.070 9 O 0.029 5.971 10 O -0.273 6.273 11 C 0.304 3.696 12 O -0.393 6.393 13 C -0.149 4.149 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.192 0.808 30 H 0.208 0.792 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.300 -3.337 -21.886 22.552 hybrid contribution -0.018 -0.015 1.252 1.252 sum -4.318 -3.352 -20.634 21.346 Atomic orbital electron populations 1.22179 0.93351 1.03360 1.03637 1.22617 0.94767 0.97508 0.82317 0.89280 1.20331 0.84805 1.04167 0.97870 1.24390 0.96733 0.90298 0.98561 1.22639 0.91106 1.03966 1.06085 1.25118 1.01240 0.93092 0.99456 1.73881 0.94785 1.18951 1.19419 1.84804 1.12521 1.42245 1.57520 1.86600 1.77412 1.42844 1.20477 1.24413 0.73800 0.86226 0.85174 1.90639 1.47805 1.16882 1.83952 1.21692 1.02923 1.01357 0.88911 1.21578 1.01750 0.96023 0.94403 1.19115 0.96325 0.96073 0.90023 1.21201 1.44091 0.94724 0.95906 0.92607 1.25010 0.95427 0.95348 0.98604 1.69951 1.45300 1.16443 1.21898 0.86641 0.78545 0.81759 0.80978 1.20204 1.21277 1.20213 0.91259 0.90560 0.91199 0.87194 0.87360 0.80798 0.79168 0.88083 0.88226 0.92511 0.92429 0.96352 0.96402 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.55 37.16 0.35 -1.03 16 2 C 0.08 0.85 2.55 -26.72 -0.07 0.78 16 3 H 0.09 1.09 7.16 -51.93 -0.37 0.72 16 4 C -0.03 -0.24 5.50 -27.88 -0.15 -0.40 16 5 C -0.04 -0.37 6.52 -35.30 -0.23 -0.60 16 6 C -0.22 -2.18 11.09 -39.38 -0.44 -2.62 16 7 C -0.01 -0.12 12.17 -17.06 -0.21 -0.33 16 8 N -0.37 -4.87 12.07 30.36 0.37 -4.51 16 9 O 0.10 1.19 11.20 17.16 0.19 1.38 16 10 O -0.36 -4.55 9.64 -39.23 -0.38 -4.93 16 11 C 0.46 7.35 7.93 36.01 0.29 7.63 16 12 O -0.51 -9.54 15.20 -18.75 -0.29 -9.83 16 13 C -0.11 -1.82 5.81 -27.88 -0.16 -1.98 16 14 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 15 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 20 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.19 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 32 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -33.51 326.16 -6.16 -39.68 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.40 Total: -3.49 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.29 Total: -13.99 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 1.10 Total: -30.56 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.47 Total: -13.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.51 -6.16 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345967684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.938 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds