Wall clock time and date at job start Mon Mar 30 2020 00:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47427 * 2 1 4 4 C 1.53005 * 109.46770 * 240.00227 * 2 1 3 5 5 C 1.50696 * 109.46973 * 174.99553 * 4 2 1 6 6 C 1.35459 * 126.77504 * 90.00145 * 5 4 2 7 7 C 1.41376 * 103.98643 * 179.97438 * 6 5 4 8 8 N 1.30179 * 106.39598 * 0.02562 * 7 6 5 9 9 O 1.20917 * 111.60714 * 359.72400 * 8 7 6 10 10 O 1.45198 * 109.47350 * 120.00440 * 2 1 3 11 11 C 1.34221 * 116.99903 * 269.99854 * 10 2 1 12 12 O 1.20826 * 120.00367 * 359.97438 * 11 10 2 13 13 C 1.50706 * 120.00092 * 180.02562 * 11 10 2 14 14 C 1.52997 * 109.47238 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99697 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47276 * 59.99363 * 20 18 16 22 22 H 1.48496 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99694 * 20 18 16 24 24 H 1.08998 * 109.46762 * 299.99499 * 1 2 3 25 25 H 1.08996 * 109.47318 * 59.99471 * 1 2 3 26 26 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47522 * 294.99772 * 4 2 1 28 28 H 1.09006 * 109.47210 * 55.00031 * 4 2 1 29 29 H 1.07996 * 128.00448 * 359.97438 * 6 5 4 30 30 H 1.08003 * 126.80293 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.46953 * 299.99668 * 13 11 10 32 32 H 1.09000 * 109.47318 * 59.99266 * 13 11 10 33 33 H 1.09001 * 109.46832 * 299.99686 * 14 13 11 34 34 H 1.09004 * 109.47261 * 59.99705 * 14 13 11 35 35 H 1.08992 * 109.47554 * 299.99696 * 15 14 13 36 36 H 1.08996 * 109.47261 * 60.00229 * 15 14 13 37 37 H 0.97007 * 119.99539 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 6 4.4393 -1.4779 -0.7794 7 6 5.6933 -0.9217 -1.1215 8 7 5.4424 0.1655 -1.7920 9 8 4.2535 0.3498 -1.9128 10 8 2.0141 -0.6845 1.1855 11 6 2.2173 0.0638 2.2810 12 8 1.9984 1.2517 2.2503 13 6 2.7196 -0.5773 3.5490 14 6 2.8635 0.4887 4.6371 15 6 3.3728 -0.1623 5.9246 16 6 3.5151 0.8877 6.9961 17 1 3.2668 1.9164 6.7806 18 6 3.9625 0.5351 8.2518 19 7 4.2644 -0.7177 8.5144 20 14 4.1383 1.8365 9.5802 21 1 2.8177 2.4668 9.8336 22 1 4.6327 1.2048 10.8298 23 1 5.1036 2.8728 9.1334 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2058 28 1 1.6053 -0.2617 -2.1371 29 1 4.2424 -2.3816 -0.2219 30 1 6.6665 -1.3195 -0.8746 31 1 2.0107 -1.3375 3.8772 32 1 3.6886 -1.0403 3.3629 33 1 3.5721 1.2492 4.3091 34 1 1.8941 0.9513 4.8231 35 1 2.6639 -0.9226 6.2524 36 1 4.3420 -0.6252 5.7389 37 1 4.5788 -0.9658 9.3980 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345967684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:05 Heat of formation + Delta-G solvation = -69.856564 kcal Electronic energy + Delta-G solvation = -19820.345866 eV Core-core repulsion = 16564.779884 eV Total energy + Delta-G solvation = -3255.565982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.90643 -41.61213 -38.24440 -36.18014 -35.36068 -34.66646 -34.07841 -32.29515 -29.95005 -28.09043 -26.24855 -24.46870 -23.73468 -22.54059 -21.86763 -21.30813 -18.88298 -18.61436 -18.50963 -18.29916 -17.44490 -16.97112 -16.46981 -16.10226 -15.64530 -15.11839 -14.77446 -14.36463 -14.33865 -14.12383 -13.83457 -13.70875 -13.26726 -13.11798 -12.84574 -12.64968 -12.55687 -12.47254 -12.29193 -12.03656 -11.75550 -11.62045 -11.54961 -11.42905 -11.38162 -11.15348 -10.54351 -10.32974 -8.20598 -6.30564 0.47797 1.21172 1.34729 1.40126 1.42498 1.50537 1.67902 2.15290 2.41583 3.12836 3.46919 3.54555 3.69353 3.78758 4.03315 4.07362 4.12099 4.18011 4.20015 4.46741 4.62048 4.62928 4.76669 4.80029 4.89146 4.91231 4.92125 5.03791 5.14197 5.17090 5.23629 5.45181 5.52669 5.72080 5.85255 6.25773 6.77718 6.84606 7.26842 7.38103 8.90718 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.003594 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.593026 B = 7789.519069 C = 8389.026436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.076 3.924 3 H 0.064 0.936 4 C -0.026 4.026 5 C -0.041 4.041 6 C -0.224 4.224 7 C -0.017 4.017 8 N -0.404 5.404 9 O 0.078 5.922 10 O -0.346 6.346 11 C 0.469 3.531 12 O -0.542 6.542 13 C -0.105 4.105 14 C -0.087 4.087 15 C 0.026 3.974 16 C -0.550 4.550 17 H 0.052 0.948 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.960 3.040 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.271 1.271 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.195 0.805 30 H 0.213 0.787 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.006 0.994 36 H 0.002 0.998 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 -5.250 -22.145 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.082 0.918 4 C -0.063 4.063 5 C -0.104 4.104 6 C -0.245 4.245 7 C -0.194 4.194 8 N -0.110 5.110 9 O 0.014 5.986 10 O -0.263 6.263 11 C 0.314 3.686 12 O -0.431 6.431 13 C -0.143 4.143 14 C -0.124 4.124 15 C -0.011 4.011 16 C -0.588 4.588 17 H 0.070 0.930 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.785 3.215 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.196 1.196 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.107 0.893 27 H 0.156 0.844 28 H 0.157 0.843 29 H 0.212 0.788 30 H 0.229 0.771 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.139 -4.066 -22.649 23.578 hybrid contribution 0.226 0.161 1.427 1.454 sum -4.913 -3.905 -21.221 22.130 Atomic orbital electron populations 1.22182 0.91507 1.04633 1.03742 1.22940 0.96258 0.96555 0.82091 0.91771 1.20525 0.82810 1.05786 0.97196 1.24994 0.98090 0.89577 0.97780 1.22994 0.90644 1.04687 1.06134 1.25640 1.02788 0.92493 0.98519 1.73871 0.95470 1.20433 1.21217 1.84759 1.12496 1.43138 1.58206 1.86559 1.76973 1.42293 1.20459 1.24125 0.73111 0.85601 0.85809 1.90636 1.49513 1.18348 1.84650 1.21496 1.04634 1.00065 0.88071 1.21266 1.00419 0.96684 0.94079 1.18998 0.95270 0.95259 0.91546 1.21645 1.44475 0.95318 0.97314 0.92972 1.25875 0.94877 0.97575 1.00961 1.70055 1.45805 1.18260 1.22668 0.85578 0.78850 0.79042 0.78056 1.19361 1.20390 1.19574 0.93792 0.87867 0.89296 0.84444 0.84311 0.78768 0.77066 0.85996 0.86591 0.93919 0.93351 0.97608 0.97925 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.55 71.98 0.69 -1.59 16 2 C 0.08 1.41 2.55 30.60 0.08 1.48 16 3 H 0.06 1.54 7.16 -2.39 -0.02 1.52 16 4 C -0.03 -0.29 5.50 29.85 0.16 -0.13 16 5 C -0.04 -0.76 6.52 25.04 0.16 -0.60 16 6 C -0.22 -4.09 11.09 22.40 0.25 -3.84 16 7 C -0.02 -0.35 12.17 85.71 1.04 0.69 16 8 N -0.40 -10.67 12.07 -59.26 -0.72 -11.39 16 9 O 0.08 1.90 11.20 71.57 0.80 2.70 16 10 O -0.35 -8.19 9.64 -51.33 -0.49 -8.69 16 11 C 0.47 14.59 7.93 71.24 0.56 15.16 16 12 O -0.54 -20.57 15.20 21.96 0.33 -20.24 16 13 C -0.11 -3.34 5.81 29.85 0.17 -3.17 16 14 C -0.09 -3.68 4.44 30.59 0.14 -3.55 16 15 C 0.03 1.36 4.97 29.85 0.15 1.51 16 16 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 17 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 18 C 0.01 0.31 5.46 84.66 0.46 0.77 16 19 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 20 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.21 3.17 8.06 -2.91 -0.02 3.14 16 31 H 0.12 3.38 8.14 -2.39 -0.02 3.36 16 32 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.05 2.11 8.10 -2.38 -0.02 2.09 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 Total: -1.00 -73.69 326.16 7.39 -66.30 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.05 Total: 4.85 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.10 Total: -24.85 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.43 Total: -66.81 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: 0.64 Total: -26.22 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -73.69 7.39 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345967684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.555 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds