Wall clock time and date at job start Mon Mar 30 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99677 * 2 1 4 4 O 1.20819 * 120.00646 * 359.97438 * 3 2 1 5 5 C 1.50710 * 119.99720 * 180.02562 * 3 2 1 6 6 H 1.09006 * 112.84321 * 311.19557 * 5 3 2 7 7 C 1.53782 * 113.61513 * 82.49619 * 5 3 2 8 8 C 1.53780 * 87.07758 * 139.98230 * 7 5 3 9 9 H 1.09009 * 113.68936 * 89.12611 * 8 7 5 10 10 C 1.50703 * 113.61542 * 220.01877 * 8 7 5 11 11 O 1.21296 * 119.99620 * 97.49917 * 10 8 7 12 12 N 1.34771 * 119.99771 * 277.50123 * 10 8 7 13 13 C 1.37111 * 119.99688 * 180.02562 * 12 10 8 14 14 H 1.07998 * 119.99195 * 224.47483 * 13 12 10 15 15 C 1.38936 * 120.00025 * 44.47252 * 13 12 10 16 16 N 1.31414 * 120.00570 * 18.00347 * 15 13 12 17 17 Si 1.86808 * 119.99817 * 198.27816 * 15 13 12 18 18 H 1.48501 * 109.46854 * 179.72618 * 17 15 13 19 19 H 1.48505 * 109.46961 * 299.72451 * 17 15 13 20 20 H 1.48493 * 109.46981 * 59.72733 * 17 15 13 21 21 C 1.46497 * 120.00471 * 359.97438 * 12 10 8 22 22 C 1.52998 * 117.50358 * 183.28093 * 21 12 10 23 23 C 1.52995 * 117.50098 * 114.62084 * 21 12 10 24 24 C 1.53781 * 113.61466 * 179.97438 * 5 3 2 25 25 H 1.08997 * 109.46853 * 60.00422 * 1 2 3 26 26 H 1.09007 * 109.47262 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47129 * 300.00498 * 1 2 3 28 28 H 1.08999 * 113.61277 * 25.43559 * 7 5 3 29 29 H 1.08998 * 113.61249 * 254.53306 * 7 5 3 30 30 H 0.97002 * 120.00186 * 174.95133 * 16 15 13 31 31 H 1.09005 * 115.54705 * 328.94583 * 21 12 10 32 32 H 1.09007 * 117.49703 * 359.97438 * 22 21 12 33 33 H 1.08998 * 117.50527 * 145.01819 * 22 21 12 34 34 H 1.09001 * 117.49923 * 214.98311 * 23 21 12 35 35 H 1.09007 * 117.49746 * 359.97438 * 23 21 12 36 36 H 1.08994 * 113.61201 * 105.46848 * 24 5 3 37 37 H 1.08996 * 113.61319 * 334.56579 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0239 0.6361 0.7550 7 6 4.1906 1.1236 -1.3978 8 6 5.1807 2.2269 -0.9886 9 1 6.0813 1.8495 -0.5041 10 6 5.4777 3.2107 -2.0909 11 8 4.8877 4.2697 -2.1337 12 7 6.3986 2.9138 -3.0290 13 6 6.6692 3.8092 -4.0315 14 1 6.7605 3.4662 -5.0515 15 6 6.8258 5.1575 -3.7352 16 7 7.0684 5.5351 -2.5001 17 14 6.6838 6.4344 -5.0913 18 1 6.8832 7.7897 -4.5178 19 1 7.7191 6.1767 -6.1242 20 1 5.3362 6.3520 -5.7096 21 6 7.1115 1.6351 -2.9769 22 6 8.1989 1.3891 -4.0247 23 6 6.8658 0.6424 -4.1149 24 6 4.1078 2.7142 -0.0011 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.5226 1.4151 -2.2084 29 1 4.6609 0.1543 -1.5633 30 1 7.2503 6.4677 -2.3048 31 1 7.2726 1.2270 -1.9790 32 1 8.3837 2.1788 -4.7531 33 1 9.0752 0.8190 -3.7164 34 1 6.8656 -0.4187 -3.8659 35 1 6.1734 0.9407 -4.9022 36 1 4.5111 3.0293 0.9611 37 1 3.4172 3.4403 -0.4300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353542832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:14 Heat of formation + Delta-G solvation = -58.361643 kcal Electronic energy + Delta-G solvation = -20912.976609 eV Core-core repulsion = 17657.909084 eV Total energy + Delta-G solvation = -3255.067525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67259 -39.07774 -37.34213 -36.19817 -35.59028 -32.71903 -30.85906 -28.63688 -26.79502 -25.37637 -24.70668 -22.15082 -21.64982 -20.99408 -19.75594 -18.58171 -17.72752 -16.92695 -16.27434 -16.05065 -15.74023 -15.10158 -14.62886 -14.26348 -13.76866 -13.53177 -13.47163 -12.93518 -12.60838 -12.18680 -12.11528 -12.00153 -11.45417 -11.18217 -11.08656 -10.88138 -10.81342 -10.78182 -10.57461 -10.49944 -10.18902 -10.10814 -10.05020 -9.87877 -9.69045 -8.65483 -7.94554 -6.98282 -6.07871 -3.83644 2.32357 2.79957 3.32290 3.39968 3.43528 4.08171 4.30203 4.62533 4.72416 4.79519 4.86726 5.04088 5.05334 5.11973 5.20878 5.26264 5.38566 5.46845 5.59359 5.70875 5.79747 5.90078 5.98075 6.09811 6.14955 6.23895 6.26344 6.40406 6.49434 6.51366 6.77604 6.85557 6.95447 7.64853 7.87987 8.31404 9.10871 9.20776 9.70604 10.34878 11.01334 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.005762 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.739587 B = 4858.377000 C = 5560.030579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.470 3.530 4 O -0.502 6.502 5 C -0.115 4.115 6 H 0.122 0.878 7 C -0.098 4.098 8 C -0.126 4.126 9 H 0.100 0.900 10 C 0.494 3.506 11 O -0.529 6.529 12 N -0.426 5.426 13 C -0.350 4.350 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.834 5.834 17 Si 0.912 3.088 18 H -0.286 1.286 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.079 3.921 22 C -0.176 4.176 23 C -0.208 4.208 24 C -0.093 4.093 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.264 0.736 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 -13.065 4.444 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.388 6.388 5 C -0.134 4.134 6 H 0.140 0.860 7 C -0.136 4.136 8 C -0.148 4.148 9 H 0.118 0.882 10 C 0.281 3.719 11 O -0.406 6.406 12 N -0.147 5.147 13 C -0.477 4.477 14 H 0.093 0.907 15 C -0.136 4.136 16 N -0.467 5.467 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.028 4.028 22 C -0.213 4.213 23 C -0.247 4.247 24 C -0.131 4.131 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.201 -11.998 4.567 13.851 hybrid contribution -0.084 0.565 -0.531 0.780 sum -5.284 -11.432 4.037 13.226 Atomic orbital electron populations 1.23222 0.77018 1.03308 1.02473 1.86531 1.22961 1.34018 1.84337 1.23845 0.91987 0.81057 0.71865 1.90670 1.66956 1.36410 1.44766 1.22685 0.86436 1.02412 1.01879 0.85970 1.22748 0.97539 0.99388 0.93879 1.22581 0.97660 0.96936 0.97625 0.88155 1.19463 0.81075 0.87374 0.84024 1.90534 1.50848 1.24651 1.74570 1.42748 1.32316 1.13406 1.26243 1.18791 1.53752 0.87464 0.87675 0.90679 1.25232 0.94002 0.98457 0.95957 1.69807 1.40436 1.17326 1.19148 0.86282 0.78696 0.80040 0.81022 1.21199 1.20416 1.19987 1.21674 0.98983 0.88917 0.93184 1.23072 0.91560 1.02833 1.03867 1.23316 1.00657 0.96732 1.03988 1.22802 0.97403 0.93226 0.99682 0.91976 0.88375 0.92126 0.89438 0.89975 0.92558 0.88049 0.87565 0.89884 0.89854 0.89218 0.90784 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.78 10.57 -39.24 -0.41 -5.20 16 3 C 0.47 7.29 7.48 36.01 0.27 7.56 16 4 O -0.50 -9.40 15.65 -18.74 -0.29 -9.70 16 5 C -0.12 -1.64 4.26 -90.95 -0.39 -2.02 16 6 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 7 C -0.10 -1.50 7.15 -25.92 -0.19 -1.69 16 8 C -0.13 -2.34 3.00 -90.98 -0.27 -2.61 16 9 H 0.10 1.65 7.11 -51.92 -0.37 1.28 16 10 C 0.49 12.35 6.49 -10.99 -0.07 12.28 16 11 O -0.53 -15.70 13.67 5.54 0.08 -15.62 16 12 N -0.43 -10.52 2.83 -107.73 -0.31 -10.82 16 13 C -0.35 -9.54 7.91 -14.93 -0.12 -9.66 16 14 H 0.08 1.99 7.27 -52.49 -0.38 1.60 16 15 C 0.07 2.10 4.39 -17.47 -0.08 2.02 16 16 N -0.83 -24.85 11.74 55.49 0.65 -24.20 16 17 Si 0.91 22.19 29.59 -169.99 -5.03 17.16 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.08 1.53 5.87 -67.94 -0.40 1.13 16 22 C -0.18 -3.11 9.80 -26.70 -0.26 -3.37 16 23 C -0.21 -3.44 10.36 -26.70 -0.28 -3.72 16 24 C -0.09 -1.66 6.73 -25.94 -0.17 -1.83 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 28 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.26 7.58 8.32 -40.82 -0.34 7.24 16 31 H 0.10 1.73 6.72 -51.93 -0.35 1.38 16 32 H 0.11 2.11 6.73 -51.92 -0.35 1.76 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.11 2.32 6.72 -51.93 -0.35 1.97 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -34.49 313.56 -6.63 -41.13 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.15 Total: 3.03 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.89 Total: -0.51 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.35 Total: -35.02 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.63 Total: -30.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.49 -6.63 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353542832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.234 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds