Wall clock time and date at job start Mon Mar 30 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 116.99677 * 2 1 4 4 O 1.20819 * 120.00646 * 359.97438 * 3 2 1 5 5 C 1.50710 * 119.99720 * 180.02562 * 3 2 1 6 6 H 1.09006 * 112.84321 * 311.19557 * 5 3 2 7 7 C 1.53782 * 113.61513 * 82.49619 * 5 3 2 8 8 C 1.53780 * 87.07758 * 139.98230 * 7 5 3 9 9 H 1.09009 * 113.68936 * 89.12611 * 8 7 5 10 10 C 1.50703 * 113.61542 * 220.01877 * 8 7 5 11 11 O 1.21296 * 119.99620 * 97.49917 * 10 8 7 12 12 N 1.34771 * 119.99771 * 277.50123 * 10 8 7 13 13 C 1.37111 * 119.99688 * 180.02562 * 12 10 8 14 14 H 1.07998 * 119.99195 * 224.47483 * 13 12 10 15 15 C 1.38936 * 120.00025 * 44.47252 * 13 12 10 16 16 N 1.31414 * 120.00570 * 18.00347 * 15 13 12 17 17 Si 1.86808 * 119.99817 * 198.27816 * 15 13 12 18 18 H 1.48501 * 109.46854 * 179.72618 * 17 15 13 19 19 H 1.48505 * 109.46961 * 299.72451 * 17 15 13 20 20 H 1.48493 * 109.46981 * 59.72733 * 17 15 13 21 21 C 1.46497 * 120.00471 * 359.97438 * 12 10 8 22 22 C 1.52998 * 117.50358 * 183.28093 * 21 12 10 23 23 C 1.52995 * 117.50098 * 114.62084 * 21 12 10 24 24 C 1.53781 * 113.61466 * 179.97438 * 5 3 2 25 25 H 1.08997 * 109.46853 * 60.00422 * 1 2 3 26 26 H 1.09007 * 109.47262 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47129 * 300.00498 * 1 2 3 28 28 H 1.08999 * 113.61277 * 25.43559 * 7 5 3 29 29 H 1.08998 * 113.61249 * 254.53306 * 7 5 3 30 30 H 0.97002 * 120.00186 * 174.95133 * 16 15 13 31 31 H 1.09005 * 115.54705 * 328.94583 * 21 12 10 32 32 H 1.09007 * 117.49703 * 359.97438 * 22 21 12 33 33 H 1.08998 * 117.50527 * 145.01819 * 22 21 12 34 34 H 1.09001 * 117.49923 * 214.98311 * 23 21 12 35 35 H 1.09007 * 117.49746 * 359.97438 * 23 21 12 36 36 H 1.08994 * 113.61201 * 105.46848 * 24 5 3 37 37 H 1.08996 * 113.61319 * 334.56579 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0239 0.6361 0.7550 7 6 4.1906 1.1236 -1.3978 8 6 5.1807 2.2269 -0.9886 9 1 6.0813 1.8495 -0.5041 10 6 5.4777 3.2107 -2.0909 11 8 4.8877 4.2697 -2.1337 12 7 6.3986 2.9138 -3.0290 13 6 6.6692 3.8092 -4.0315 14 1 6.7605 3.4662 -5.0515 15 6 6.8258 5.1575 -3.7352 16 7 7.0684 5.5351 -2.5001 17 14 6.6838 6.4344 -5.0913 18 1 6.8832 7.7897 -4.5178 19 1 7.7191 6.1767 -6.1242 20 1 5.3362 6.3520 -5.7096 21 6 7.1115 1.6351 -2.9769 22 6 8.1989 1.3891 -4.0247 23 6 6.8658 0.6424 -4.1149 24 6 4.1078 2.7142 -0.0011 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.5226 1.4151 -2.2084 29 1 4.6609 0.1543 -1.5633 30 1 7.2503 6.4677 -2.3048 31 1 7.2726 1.2270 -1.9790 32 1 8.3837 2.1788 -4.7531 33 1 9.0752 0.8190 -3.7164 34 1 6.8656 -0.4187 -3.8659 35 1 6.1734 0.9407 -4.9022 36 1 4.5111 3.0293 0.9611 37 1 3.4172 3.4403 -0.4300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353542832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:14 Heat of formation + Delta-G solvation = -80.754975 kcal Electronic energy + Delta-G solvation = -20913.947657 eV Core-core repulsion = 17657.909084 eV Total energy + Delta-G solvation = -3256.038573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.92645 -40.62227 -38.75932 -37.55663 -37.17491 -34.69411 -32.77594 -29.80414 -28.15800 -26.69940 -26.41311 -23.65107 -22.99358 -22.54222 -21.20358 -20.07816 -19.14376 -18.24525 -17.83385 -17.41654 -17.13738 -16.71543 -16.29672 -15.81635 -15.47767 -14.97836 -14.73735 -14.24275 -14.18774 -13.77474 -13.52760 -13.17486 -12.93041 -12.90254 -12.83343 -12.66149 -12.23301 -12.15841 -12.12640 -11.95065 -11.79945 -11.61949 -11.40566 -11.28746 -11.10538 -10.67446 -9.86348 -8.91731 -8.19006 -5.96497 1.12302 1.33518 1.43026 1.45673 1.75177 2.25168 2.44097 3.13182 3.18274 3.32355 3.47246 3.51534 3.82307 3.88164 4.12861 4.20243 4.31343 4.32529 4.33095 4.39722 4.57230 4.65794 4.70422 4.73340 4.82496 4.95935 4.97862 5.08319 5.14028 5.35240 5.37279 5.45628 5.49628 5.55258 6.22749 6.72847 7.07373 7.26480 7.76047 8.43443 8.89612 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.022151 B = 0.005762 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.739587 B = 4858.377000 C = 5560.030579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.470 3.530 4 O -0.545 6.545 5 C -0.091 4.091 6 H 0.173 0.827 7 C -0.085 4.085 8 C -0.122 4.122 9 H 0.133 0.867 10 C 0.475 3.525 11 O -0.594 6.594 12 N -0.442 5.442 13 C -0.356 4.356 14 H 0.074 0.926 15 C 0.022 3.978 16 N -0.872 5.872 17 Si 0.965 3.035 18 H -0.288 1.288 19 H -0.254 1.254 20 H -0.286 1.286 21 C 0.050 3.950 22 C -0.177 4.177 23 C -0.178 4.178 24 C -0.105 4.105 25 H 0.052 0.948 26 H 0.138 0.862 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.258 0.742 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.948 -16.832 4.926 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.315 3.685 4 O -0.435 6.435 5 C -0.110 4.110 6 H 0.190 0.810 7 C -0.123 4.123 8 C -0.143 4.143 9 H 0.150 0.850 10 C 0.265 3.735 11 O -0.476 6.476 12 N -0.162 5.162 13 C -0.484 4.484 14 H 0.092 0.908 15 C -0.184 4.184 16 N -0.507 5.507 17 Si 0.791 3.209 18 H -0.214 1.214 19 H -0.178 1.178 20 H -0.212 1.212 21 C -0.055 4.055 22 C -0.214 4.214 23 C -0.217 4.217 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.156 0.844 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.499 -15.835 5.018 17.210 hybrid contribution -0.357 1.642 -0.729 1.832 sum -4.856 -14.193 4.290 15.602 Atomic orbital electron populations 1.23555 0.75234 1.05814 1.02169 1.86511 1.24661 1.32362 1.83581 1.24097 0.92577 0.81080 0.70763 1.90669 1.67969 1.38005 1.46831 1.22650 0.85815 1.00112 1.02401 0.80967 1.22671 0.96042 0.99954 0.93613 1.22602 0.99493 0.96548 0.95695 0.84966 1.20615 0.80073 0.87710 0.85146 1.90489 1.53001 1.27704 1.76385 1.43002 1.32802 1.14859 1.25572 1.19033 1.52358 0.88360 0.88660 0.90792 1.26012 0.94175 1.00482 0.97771 1.69913 1.42849 1.16982 1.20962 0.85452 0.78491 0.77793 0.79212 1.21369 1.17815 1.21180 1.22041 1.00356 0.87360 0.95751 1.23123 0.93265 1.02686 1.02347 1.23328 0.98803 0.98362 1.01189 1.22717 0.96901 0.94874 0.99822 0.92865 0.84418 0.92004 0.92379 0.85559 0.93287 0.84907 0.90641 0.86399 0.85242 0.91291 0.89437 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.41 10.57 -51.35 -0.54 -8.95 16 3 C 0.47 13.90 7.48 71.24 0.53 14.44 16 4 O -0.54 -20.79 15.65 21.99 0.34 -20.44 16 5 C -0.09 -2.33 4.26 -11.01 -0.05 -2.38 16 6 H 0.17 2.75 8.14 -2.38 -0.02 2.73 16 7 C -0.08 -2.37 7.15 31.12 0.22 -2.15 16 8 C -0.12 -4.34 3.00 -11.03 -0.03 -4.37 16 9 H 0.13 3.84 7.11 -2.38 -0.02 3.82 16 10 C 0.48 24.26 6.49 87.66 0.57 24.83 16 11 O -0.59 -37.23 13.67 -3.08 -0.04 -37.27 16 12 N -0.44 -21.90 2.83 -613.15 -1.74 -23.64 16 13 C -0.36 -19.90 7.91 84.04 0.66 -19.24 16 14 H 0.07 4.01 7.27 -2.91 -0.02 3.99 16 15 C 0.02 1.26 4.39 84.92 0.37 1.63 16 16 N -0.87 -54.11 11.74 21.66 0.25 -53.86 16 17 Si 0.97 47.07 29.59 68.60 2.03 49.10 16 18 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 19 H -0.25 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 21 C 0.05 1.80 5.87 44.99 0.26 2.06 16 22 C -0.18 -5.79 9.80 30.62 0.30 -5.49 16 23 C -0.18 -5.25 10.36 30.61 0.32 -4.93 16 24 C -0.11 -3.72 6.73 31.11 0.21 -3.51 16 25 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 26 H 0.14 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 28 H 0.06 1.98 8.05 -2.39 -0.02 1.96 16 29 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.26 15.54 8.32 -92.71 -0.77 14.76 16 31 H 0.13 3.93 6.72 -2.38 -0.02 3.91 16 32 H 0.08 2.95 6.73 -2.38 -0.02 2.94 16 33 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.06 2.72 6.72 -2.39 -0.02 2.71 16 Total: -1.00 -82.33 313.56 5.95 -76.39 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.07 Total: 16.13 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.57 Total: 2.55 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.48 Total: -77.50 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -0.24 Total: -66.67 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -82.33 5.95 -76.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353542832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.368 kcal (2) G-P(sol) polarization free energy of solvation -82.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds