Wall clock time and date at job start Mon Mar 30 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33122 * 1 3 3 C 1.50706 * 119.99865 * 2 1 4 4 C 1.52994 * 109.47062 * 95.95082 * 3 2 1 5 5 C 1.50702 * 109.46760 * 174.28241 * 4 3 2 6 6 O 1.20821 * 120.00144 * 0.02562 * 5 4 3 7 7 O 1.34234 * 119.99655 * 179.97438 * 5 4 3 8 8 C 1.45203 * 116.99590 * 180.02562 * 7 5 4 9 9 C 1.46959 * 120.00313 * 180.02562 * 2 1 3 10 10 O 1.21657 * 119.99696 * 353.62224 * 9 2 1 11 11 N 1.34775 * 119.99959 * 173.63202 * 9 2 1 12 12 C 1.36811 * 120.00294 * 5.61866 * 11 9 2 13 13 H 1.08003 * 120.00092 * 55.41583 * 12 11 9 14 14 C 1.39071 * 120.00598 * 235.41144 * 12 11 9 15 15 N 1.31352 * 119.99563 * 8.29115 * 14 12 11 16 16 Si 1.86800 * 120.00574 * 188.28869 * 14 12 11 17 17 H 1.48498 * 109.47107 * 270.00293 * 16 14 12 18 18 H 1.48501 * 109.46658 * 29.99922 * 16 14 12 19 19 H 1.48497 * 109.47022 * 149.99956 * 16 14 12 20 20 C 1.46495 * 119.99748 * 185.63135 * 11 9 2 21 21 C 1.53007 * 117.49614 * 313.13987 * 20 11 9 22 22 C 1.53009 * 117.49646 * 244.48455 * 20 11 9 23 23 H 1.07994 * 120.00123 * 359.97438 * 1 2 3 24 24 H 1.08000 * 119.99680 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46600 * 215.95029 * 3 2 1 26 26 H 1.08998 * 109.46877 * 335.94331 * 3 2 1 27 27 H 1.09002 * 109.47122 * 294.28307 * 4 3 2 28 28 H 1.08996 * 109.47458 * 54.28707 * 4 3 2 29 29 H 1.08995 * 109.47175 * 300.00425 * 8 7 5 30 30 H 1.09003 * 109.47136 * 60.00590 * 8 7 5 31 31 H 1.09005 * 109.46880 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00090 * 356.01288 * 15 14 12 33 33 H 1.08997 * 115.55627 * 98.80666 * 20 11 9 34 34 H 1.08995 * 117.49973 * 0.02562 * 21 20 11 35 35 H 1.09000 * 117.50031 * 145.02291 * 21 20 11 36 36 H 1.08999 * 117.49744 * 214.97798 * 22 20 11 37 37 H 1.08995 * 117.49353 * 359.97280 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 6 2.0847 1.3052 0.0000 4 6 2.4692 1.6720 1.4347 5 6 3.3415 2.9009 1.4223 6 8 3.6260 3.4293 0.3736 7 8 3.8015 3.4090 2.5764 8 6 4.6357 4.5943 2.4887 9 6 2.0661 -1.2727 -0.0006 10 8 1.4635 -2.3230 0.1160 11 7 3.4076 -1.2761 -0.1300 12 6 4.0965 -0.0942 -0.1453 13 1 3.9863 0.6056 0.6699 14 6 4.9387 0.2062 -1.2105 15 7 4.9506 -0.5628 -2.2753 16 14 6.0528 1.7032 -1.1270 17 1 5.3401 2.8823 -1.6811 18 1 6.4217 1.9674 0.2870 19 1 7.2823 1.4500 -1.9204 20 6 4.1281 -2.5455 -0.2547 21 6 3.7674 -3.6620 0.7275 22 6 5.0989 -2.9199 0.8672 23 1 -0.5400 0.9352 0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 2.9868 1.2038 -0.6033 26 1 1.4537 2.0890 -0.4189 27 1 1.5670 1.8726 2.0126 28 1 3.0144 0.8441 1.8878 29 1 5.5209 4.3723 1.8928 30 1 4.0732 5.4004 2.0174 31 1 4.9393 4.8998 3.4900 32 1 4.4154 -1.3716 -2.2955 33 1 4.3965 -2.8361 -1.2703 34 1 2.9937 -3.4520 1.4660 35 1 3.7989 -4.6869 0.3580 36 1 6.0059 -3.4570 0.5895 37 1 5.2017 -2.2214 1.6976 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464494545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:11 Heat of formation + Delta-G solvation = -47.836854 kcal Electronic energy + Delta-G solvation = -21622.657528 eV Core-core repulsion = 18368.046392 eV Total energy + Delta-G solvation = -3254.611136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22584 -39.23560 -36.41249 -36.05989 -34.96505 -33.31939 -30.89807 -30.47090 -27.55158 -24.88689 -24.16420 -22.93447 -21.62712 -20.41774 -19.89580 -18.88491 -17.49415 -16.94404 -16.33909 -16.11436 -15.47951 -15.07910 -14.83247 -14.14246 -13.79538 -13.60170 -13.33631 -13.01880 -12.62542 -12.59739 -12.10610 -11.86523 -11.60896 -11.37596 -11.05867 -10.87172 -10.79510 -10.63080 -10.29394 -10.16281 -10.06363 -10.01031 -9.76190 -9.29535 -8.87974 -8.61967 -8.44670 -7.67233 -6.59492 -4.23634 2.22544 2.60512 3.07107 3.29973 3.39716 3.49312 4.12302 4.33861 4.50521 4.68027 4.98704 5.13495 5.23603 5.31478 5.54309 5.61257 5.62110 5.69613 5.71561 5.77710 5.94249 6.00825 6.07150 6.26347 6.30636 6.48040 6.64586 6.70031 6.83010 6.88119 7.04353 7.13183 7.51652 7.70857 7.94882 8.14055 8.33805 8.92397 9.34557 9.73252 10.58510 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.009203 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.312626 B = 3041.659864 C = 3813.514235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C -0.111 4.111 4 C -0.100 4.100 5 C 0.460 3.540 6 O -0.495 6.495 7 O -0.366 6.366 8 C 0.034 3.966 9 C 0.514 3.486 10 O -0.594 6.594 11 N -0.426 5.426 12 C -0.423 4.423 13 H 0.091 0.909 14 C 0.024 3.976 15 N -0.869 5.869 16 Si 1.063 2.937 17 H -0.265 1.265 18 H -0.287 1.287 19 H -0.283 1.283 20 C 0.080 3.920 21 C -0.170 4.170 22 C -0.179 4.179 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.161 0.839 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.280 0.720 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 5.879 7.657 9.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.303 3.697 6 O -0.382 6.382 7 O -0.283 6.283 8 C -0.060 4.060 9 C 0.305 3.695 10 O -0.480 6.480 11 N -0.146 5.146 12 C -0.550 4.550 13 H 0.108 0.892 14 C -0.187 4.187 15 N -0.501 5.501 16 Si 0.889 3.111 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.209 1.209 20 C -0.024 4.024 21 C -0.208 4.208 22 C -0.217 4.217 23 H 0.118 0.882 24 H 0.123 0.877 25 H 0.178 0.822 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.041 6.409 6.503 9.131 hybrid contribution -0.875 -0.671 0.815 1.371 sum -0.834 5.738 7.319 9.337 Atomic orbital electron populations 1.24280 0.94772 1.01680 0.99162 1.21529 0.94521 0.94900 1.00943 1.21594 1.05379 0.92131 0.95528 1.21484 0.98122 0.92988 1.01156 1.24028 0.78695 0.85530 0.81480 1.90664 1.55351 1.59932 1.32207 1.86515 1.62535 1.43370 1.35923 1.23197 0.94175 0.85450 1.03174 1.18620 0.82495 0.88516 0.79823 1.90631 1.68730 1.33333 1.55320 1.42785 1.03284 1.04220 1.64292 1.20529 1.28636 0.96515 1.09271 0.89192 1.26486 0.97559 1.03553 0.91132 1.70652 1.38931 1.13683 1.26840 0.83546 0.76245 0.75095 0.76214 1.18999 1.21289 1.20919 1.21639 0.99085 0.87340 0.94331 1.23049 0.98061 0.96125 1.03582 1.23064 0.93363 1.03240 1.02004 0.88163 0.87702 0.82198 0.92901 0.89118 0.87001 0.91963 0.92143 0.88585 0.90779 0.88065 0.88589 0.89675 0.89508 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 13.91 28.95 0.40 -2.46 16 2 C -0.12 -2.42 5.22 -102.87 -0.54 -2.96 16 3 C -0.11 -2.19 3.90 -27.88 -0.11 -2.30 16 4 C -0.10 -1.73 4.79 -27.89 -0.13 -1.86 16 5 C 0.46 8.18 7.50 36.01 0.27 8.45 16 6 O -0.50 -9.99 14.05 -18.75 -0.26 -10.25 16 7 O -0.37 -5.72 10.57 -39.27 -0.41 -6.14 16 8 C 0.03 0.42 10.56 101.05 1.07 1.48 16 9 C 0.51 12.43 7.44 -12.73 -0.09 12.33 16 10 O -0.59 -15.31 14.42 5.23 0.08 -15.23 16 11 N -0.43 -10.34 2.44 -111.29 -0.27 -10.62 16 12 C -0.42 -10.24 5.45 -15.02 -0.08 -10.33 16 13 H 0.09 2.08 3.00 -52.48 -0.16 1.92 16 14 C 0.02 0.61 4.77 -17.45 -0.08 0.53 16 15 N -0.87 -23.80 13.47 55.50 0.75 -23.05 16 16 Si 1.06 23.94 28.20 -169.99 -4.79 19.15 16 17 H -0.26 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 20 C 0.08 1.85 4.88 -67.92 -0.33 1.51 16 21 C -0.17 -3.43 9.21 -26.69 -0.25 -3.68 16 22 C -0.18 -3.53 10.32 -26.69 -0.28 -3.81 16 23 H 0.10 1.48 8.01 -52.49 -0.42 1.06 16 24 H 0.10 1.93 7.51 -52.49 -0.39 1.54 16 25 H 0.16 3.73 3.63 -56.07 -0.20 3.53 16 26 H 0.05 0.97 8.00 -51.93 -0.42 0.56 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.11 2.05 6.54 -51.93 -0.34 1.71 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.28 7.74 5.74 -40.82 -0.23 7.51 16 33 H 0.10 2.43 6.58 -51.93 -0.34 2.09 16 34 H 0.10 2.06 7.18 -51.93 -0.37 1.69 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -29.67 305.60 -5.10 -34.78 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.63 Total: 9.85 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.15 Total: -3.10 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.48 Total: -33.67 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.60 Total: -31.62 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.79 Total: 19.15 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.67 -5.10 -34.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464494545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.061 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds