Wall clock time and date at job start Mon Mar 30 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33122 * 1 3 3 C 1.50706 * 119.99865 * 2 1 4 4 C 1.52994 * 109.47062 * 95.95082 * 3 2 1 5 5 C 1.50702 * 109.46760 * 174.28241 * 4 3 2 6 6 O 1.20821 * 120.00144 * 0.02562 * 5 4 3 7 7 O 1.34234 * 119.99655 * 179.97438 * 5 4 3 8 8 C 1.45203 * 116.99590 * 180.02562 * 7 5 4 9 9 C 1.46959 * 120.00313 * 180.02562 * 2 1 3 10 10 O 1.21657 * 119.99696 * 353.62224 * 9 2 1 11 11 N 1.34775 * 119.99959 * 173.63202 * 9 2 1 12 12 C 1.36811 * 120.00294 * 5.61866 * 11 9 2 13 13 H 1.08003 * 120.00092 * 55.41583 * 12 11 9 14 14 C 1.39071 * 120.00598 * 235.41144 * 12 11 9 15 15 N 1.31352 * 119.99563 * 8.29115 * 14 12 11 16 16 Si 1.86800 * 120.00574 * 188.28869 * 14 12 11 17 17 H 1.48498 * 109.47107 * 270.00293 * 16 14 12 18 18 H 1.48501 * 109.46658 * 29.99922 * 16 14 12 19 19 H 1.48497 * 109.47022 * 149.99956 * 16 14 12 20 20 C 1.46495 * 119.99748 * 185.63135 * 11 9 2 21 21 C 1.53007 * 117.49614 * 313.13987 * 20 11 9 22 22 C 1.53009 * 117.49646 * 244.48455 * 20 11 9 23 23 H 1.07994 * 120.00123 * 359.97438 * 1 2 3 24 24 H 1.08000 * 119.99680 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46600 * 215.95029 * 3 2 1 26 26 H 1.08998 * 109.46877 * 335.94331 * 3 2 1 27 27 H 1.09002 * 109.47122 * 294.28307 * 4 3 2 28 28 H 1.08996 * 109.47458 * 54.28707 * 4 3 2 29 29 H 1.08995 * 109.47175 * 300.00425 * 8 7 5 30 30 H 1.09003 * 109.47136 * 60.00590 * 8 7 5 31 31 H 1.09005 * 109.46880 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00090 * 356.01288 * 15 14 12 33 33 H 1.08997 * 115.55627 * 98.80666 * 20 11 9 34 34 H 1.08995 * 117.49973 * 0.02562 * 21 20 11 35 35 H 1.09000 * 117.50031 * 145.02291 * 21 20 11 36 36 H 1.08999 * 117.49744 * 214.97798 * 22 20 11 37 37 H 1.08995 * 117.49353 * 359.97280 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3312 0.0000 0.0000 3 6 2.0847 1.3052 0.0000 4 6 2.4692 1.6720 1.4347 5 6 3.3415 2.9009 1.4223 6 8 3.6260 3.4293 0.3736 7 8 3.8015 3.4090 2.5764 8 6 4.6357 4.5943 2.4887 9 6 2.0661 -1.2727 -0.0006 10 8 1.4635 -2.3230 0.1160 11 7 3.4076 -1.2761 -0.1300 12 6 4.0965 -0.0942 -0.1453 13 1 3.9863 0.6056 0.6699 14 6 4.9387 0.2062 -1.2105 15 7 4.9506 -0.5628 -2.2753 16 14 6.0528 1.7032 -1.1270 17 1 5.3401 2.8823 -1.6811 18 1 6.4217 1.9674 0.2870 19 1 7.2823 1.4500 -1.9204 20 6 4.1281 -2.5455 -0.2547 21 6 3.7674 -3.6620 0.7275 22 6 5.0989 -2.9199 0.8672 23 1 -0.5400 0.9352 0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 2.9868 1.2038 -0.6033 26 1 1.4537 2.0890 -0.4189 27 1 1.5670 1.8726 2.0126 28 1 3.0144 0.8441 1.8878 29 1 5.5209 4.3723 1.8928 30 1 4.0732 5.4004 2.0174 31 1 4.9393 4.8998 3.4900 32 1 4.4154 -1.3716 -2.2955 33 1 4.3965 -2.8361 -1.2703 34 1 2.9937 -3.4520 1.4660 35 1 3.7989 -4.6869 0.3580 36 1 6.0059 -3.4570 0.5895 37 1 5.2017 -2.2214 1.6976 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464494545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:11 Heat of formation + Delta-G solvation = -64.937941 kcal Electronic energy + Delta-G solvation = -21623.399087 eV Core-core repulsion = 18368.046392 eV Total energy + Delta-G solvation = -3255.352695 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64004 -40.92551 -37.89602 -37.66633 -36.62889 -35.03337 -32.77658 -31.92874 -28.65583 -26.69583 -25.69439 -24.56573 -23.25056 -21.86006 -21.52331 -20.70712 -19.01757 -18.45185 -17.72849 -17.40471 -17.23315 -16.73667 -16.53817 -15.77324 -15.56198 -15.17397 -14.82654 -14.53463 -14.09785 -14.04351 -13.56298 -13.37305 -13.19109 -12.77465 -12.74367 -12.42404 -12.37979 -12.10364 -11.91079 -11.77202 -11.63595 -11.55603 -11.39044 -11.03123 -10.68786 -10.35535 -10.15545 -9.57385 -8.53593 -6.16369 0.65167 1.23532 1.47826 1.59110 1.71366 1.86272 2.33007 2.55871 2.79403 2.97022 3.11467 3.85411 3.97975 4.03967 4.13491 4.16248 4.25816 4.35425 4.36349 4.40156 4.49129 4.68041 4.72360 4.75277 4.81926 4.85464 5.09381 5.16474 5.24550 5.41416 5.49744 5.58613 5.81850 5.91816 6.10036 6.39117 6.82520 7.03262 7.48845 7.87221 8.61735 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.016435 B = 0.009203 C = 0.007341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.312626 B = 3041.659864 C = 3813.514235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.154 4.154 3 C -0.101 4.101 4 C -0.097 4.097 5 C 0.462 3.538 6 O -0.524 6.524 7 O -0.366 6.366 8 C 0.025 3.975 9 C 0.502 3.498 10 O -0.621 6.621 11 N -0.437 5.437 12 C -0.405 4.405 13 H 0.103 0.897 14 C -0.011 4.011 15 N -0.905 5.905 16 Si 1.094 2.906 17 H -0.270 1.270 18 H -0.269 1.269 19 H -0.287 1.287 20 C 0.042 3.958 21 C -0.153 4.153 22 C -0.158 4.158 23 H 0.142 0.858 24 H 0.099 0.901 25 H 0.124 0.876 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.266 0.734 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 7.060 9.485 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.134 4.134 5 C 0.306 3.694 6 O -0.413 6.413 7 O -0.283 6.283 8 C -0.068 4.068 9 C 0.294 3.706 10 O -0.509 6.509 11 N -0.156 5.156 12 C -0.532 4.532 13 H 0.120 0.880 14 C -0.216 4.216 15 N -0.540 5.540 16 Si 0.917 3.083 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.213 1.213 20 C -0.062 4.062 21 C -0.190 4.190 22 C -0.195 4.195 23 H 0.160 0.840 24 H 0.117 0.883 25 H 0.141 0.859 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.559 7.602 8.370 11.321 hybrid contribution -0.827 -1.026 0.310 1.354 sum -1.387 6.576 8.680 10.978 Atomic orbital electron populations 1.24609 0.93650 1.03370 0.94167 1.21507 0.95495 0.93792 1.04858 1.21311 1.03874 0.92063 0.96483 1.21418 0.99507 0.92434 0.99996 1.24064 0.78341 0.85415 0.81573 1.90657 1.56472 1.60922 1.33259 1.86498 1.62650 1.44497 1.34665 1.23557 0.93352 0.84320 1.05602 1.19272 0.82625 0.89639 0.79028 1.90590 1.69115 1.34552 1.56600 1.42951 1.03687 1.04671 1.64256 1.20720 1.27063 0.96530 1.08936 0.87979 1.27296 0.98695 1.04598 0.91025 1.70734 1.40703 1.14328 1.28248 0.83152 0.75017 0.73131 0.77016 1.19522 1.19410 1.21303 1.21681 1.01864 0.88186 0.94511 1.23006 0.97841 0.96428 1.01756 1.23113 0.93903 1.02506 1.00022 0.83997 0.88282 0.85866 0.91376 0.85578 0.88224 0.92947 0.91371 0.84757 0.92199 0.90057 0.89968 0.87467 0.87170 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.93 13.91 66.67 0.93 -3.00 16 2 C -0.15 -6.20 5.22 -18.73 -0.10 -6.30 16 3 C -0.10 -3.85 3.90 29.85 0.12 -3.74 16 4 C -0.10 -3.12 4.79 29.85 0.14 -2.98 16 5 C 0.46 15.50 7.50 71.24 0.53 16.03 16 6 O -0.52 -20.41 14.05 21.98 0.31 -20.11 16 7 O -0.37 -10.50 10.57 -51.45 -0.54 -11.04 16 8 C 0.02 0.54 10.56 113.37 1.20 1.73 16 9 C 0.50 24.33 7.44 86.53 0.64 24.98 16 10 O -0.62 -32.16 14.42 -4.21 -0.06 -32.22 16 11 N -0.44 -21.46 2.44 -624.24 -1.53 -22.99 16 12 C -0.41 -19.76 5.45 84.12 0.46 -19.30 16 13 H 0.10 4.68 3.00 -2.91 -0.01 4.67 16 14 C -0.01 -0.58 4.77 84.96 0.41 -0.17 16 15 N -0.91 -51.15 13.47 21.68 0.29 -50.85 16 16 Si 1.09 48.69 28.20 68.60 1.93 50.62 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 20 C 0.04 1.96 4.88 45.00 0.22 2.18 16 21 C -0.15 -6.07 9.21 30.62 0.28 -5.79 16 22 C -0.16 -6.09 10.32 30.62 0.32 -5.77 16 23 H 0.14 3.48 8.01 -2.91 -0.02 3.46 16 24 H 0.10 3.41 7.51 -2.91 -0.02 3.39 16 25 H 0.12 5.73 3.63 -6.28 -0.02 5.71 16 26 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 27 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.10 3.50 6.54 -2.39 -0.02 3.49 16 29 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 30 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.27 15.42 5.74 -92.71 -0.53 14.89 16 33 H 0.08 4.08 6.58 -2.39 -0.02 4.06 16 34 H 0.08 3.51 7.18 -2.39 -0.02 3.49 16 35 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -65.48 305.60 6.86 -58.62 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 1.31 Total: 30.09 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.14 Total: -2.14 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -1.23 Total: -73.84 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -0.30 Total: -63.36 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.93 Total: 50.62 kcal Total: -65.48 6.86 -58.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464494545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.314 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds