Wall clock time and date at job start Mon Mar 30 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47464 * 2 1 4 4 C 1.50699 * 109.47433 * 240.00073 * 2 1 3 5 5 H 1.08005 * 120.00461 * 273.82008 * 4 2 1 6 6 C 1.37882 * 119.99972 * 93.81681 * 4 2 1 7 7 N 1.31516 * 119.99761 * 353.48314 * 6 4 2 8 8 Si 1.86798 * 120.00132 * 173.48613 * 6 4 2 9 9 H 1.48502 * 109.47124 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47275 * 119.99779 * 8 6 4 11 11 H 1.48504 * 109.46986 * 239.99888 * 8 6 4 12 12 N 1.46497 * 109.47191 * 120.00396 * 2 1 3 13 13 C 1.46498 * 120.00042 * 59.99860 * 12 2 1 14 14 C 1.34782 * 119.99880 * 240.00396 * 12 2 1 15 15 O 1.21275 * 120.00252 * 5.12636 * 14 12 2 16 16 C 1.50706 * 119.99595 * 185.13038 * 14 12 2 17 17 C 1.50697 * 110.91689 * 293.88533 * 16 14 12 18 18 O 1.20822 * 120.00003 * 126.02669 * 17 16 14 19 19 O 1.34227 * 119.99979 * 306.03410 * 17 16 14 20 20 C 1.54637 * 111.03403 * 169.91926 * 16 14 12 21 21 C 1.51204 * 104.67738 * 266.59166 * 20 16 14 22 22 C 1.30533 * 111.11133 * 343.55447 * 21 20 16 23 23 C 1.51100 * 111.10208 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47461 * 174.60119 * 1 2 3 25 25 H 1.08999 * 109.47372 * 294.60837 * 1 2 3 26 26 H 1.09004 * 109.46996 * 54.60848 * 1 2 3 27 27 H 0.96998 * 120.00215 * 4.65366 * 7 6 4 28 28 H 1.09000 * 109.47234 * 94.78817 * 13 12 2 29 29 H 1.09003 * 109.46982 * 214.78288 * 13 12 2 30 30 H 1.09001 * 109.47100 * 334.78541 * 13 12 2 31 31 H 0.96698 * 117.00104 * 179.97438 * 19 17 16 32 32 H 1.09008 * 110.38592 * 25.41271 * 20 16 14 33 33 H 1.09003 * 110.38492 * 147.78818 * 20 16 14 34 34 H 1.07993 * 124.44082 * 163.53785 * 21 20 16 35 35 H 1.08003 * 124.44718 * 180.02562 * 22 21 20 36 36 H 1.09000 * 110.38707 * 257.61968 * 23 22 21 37 37 H 1.09005 * 110.38355 * 135.24758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1537 -1.7836 -1.2228 6 6 2.3371 0.0097 -2.3661 7 7 2.0696 1.2963 -2.4204 8 14 3.1298 -0.8420 -3.8274 9 1 3.3261 -2.2805 -3.5153 10 1 2.2492 -0.7085 -5.0157 11 1 4.4449 -0.2139 -4.1129 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0834 15 8 3.0096 1.1491 1.9409 16 6 3.3905 -0.7756 3.2525 17 6 2.3152 -1.2461 4.1976 18 8 2.2535 -2.4115 4.5106 19 8 1.4257 -0.3706 4.6916 20 6 4.4328 0.0981 3.9883 21 6 5.7566 -0.2731 3.3589 22 6 5.6644 -1.3942 2.6966 23 6 4.2644 -1.9576 2.7730 24 1 -0.3634 -1.0231 -0.0967 25 1 -0.3634 0.4279 0.9343 26 1 -0.3633 0.5952 -0.8378 27 1 1.7207 1.7525 -1.6388 28 1 2.4577 -2.7360 1.0463 29 1 1.5405 -2.2648 2.4972 30 1 0.7316 -2.3225 0.9126 31 1 0.7543 -0.7194 5.2938 32 1 4.2204 1.1557 3.8315 33 1 4.4397 -0.1349 5.0531 34 1 6.6597 0.3126 3.4457 35 1 6.4815 -1.8581 2.1641 36 1 4.2231 -2.7759 3.4918 37 1 3.9378 -2.2975 1.7901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:21 Heat of formation + Delta-G solvation = -99.353126 kcal Electronic energy + Delta-G solvation = -21766.742743 eV Core-core repulsion = 18509.897694 eV Total energy + Delta-G solvation = -3256.845049 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.31437 -39.16164 -37.39529 -36.23814 -35.46910 -33.08973 -30.58300 -29.19298 -28.02659 -26.35392 -24.85480 -23.78900 -22.53721 -20.30668 -19.21705 -18.83405 -17.82966 -17.25213 -16.85862 -16.26611 -15.88836 -15.32434 -14.57263 -14.14949 -13.80447 -13.55765 -13.15195 -12.90367 -12.71978 -12.42719 -12.29937 -12.21203 -11.85592 -11.64127 -11.37307 -11.28988 -11.26877 -11.08418 -10.93752 -10.78171 -10.61733 -10.19401 -10.15075 -9.16130 -8.90316 -8.77582 -8.49255 -7.64314 -6.46858 -4.20814 2.00853 2.34085 2.72781 3.28336 3.38642 3.42191 3.54926 3.66186 4.43676 4.45443 4.52515 4.84974 5.15635 5.25904 5.32033 5.43854 5.57791 5.63422 5.71435 5.84951 5.91120 5.92420 6.07683 6.23592 6.35272 6.38980 6.45075 6.57007 6.66263 6.91765 7.02093 7.15298 7.51746 7.75609 7.88292 8.21774 8.38814 8.71197 8.83997 9.52702 10.91259 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021893 B = 0.007099 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.666988 B = 3943.065455 C = 4371.842818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.237 3.763 3 H 0.070 0.930 4 C -0.605 4.605 5 H 0.055 0.945 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 1.075 2.925 9 H -0.289 1.289 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.582 5.582 13 C 0.074 3.926 14 C 0.528 3.472 15 O -0.532 6.532 16 C -0.084 4.084 17 C 0.508 3.492 18 O -0.508 6.508 19 O -0.503 6.503 20 C -0.075 4.075 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.090 4.090 24 H 0.042 0.958 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.273 0.727 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.410 0.590 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -6.231 12.673 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.137 3.863 3 H 0.088 0.912 4 C -0.643 4.643 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.536 5.536 8 Si 0.903 3.097 9 H -0.215 1.215 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.313 5.313 13 C -0.069 4.069 14 C 0.312 3.688 15 O -0.410 6.410 16 C -0.088 4.088 17 C 0.350 3.650 18 O -0.397 6.397 19 O -0.314 6.314 20 C -0.113 4.113 21 C -0.177 4.177 22 C -0.178 4.178 23 C -0.127 4.127 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.268 0.732 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.118 0.882 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.133 -5.509 10.826 12.545 hybrid contribution -1.007 -0.692 1.940 2.293 sum 2.126 -6.200 12.767 14.351 Atomic orbital electron populations 1.22162 0.98874 1.00206 0.98988 1.19180 0.90242 0.95344 0.81524 0.91181 1.22103 1.48997 0.95237 0.97998 0.92685 1.25857 0.94721 0.96054 1.01371 1.70733 1.40783 1.09919 1.32156 0.83465 0.76675 0.74570 0.74976 1.21473 1.21239 1.21199 1.48429 1.48325 1.11467 1.23078 1.21872 1.01638 0.83544 0.99889 1.19386 0.79571 0.87065 0.82736 1.90644 1.60525 1.14834 1.74963 1.21601 0.93231 0.99773 0.94239 1.22587 0.80584 0.83526 0.78279 1.90702 1.72195 1.18713 1.58094 1.84628 1.41975 1.44005 1.60785 1.21282 0.90376 1.01464 0.98131 1.23146 0.97946 0.97366 0.99286 1.23180 0.97293 0.97473 0.99891 1.21603 0.91554 0.95769 1.03776 0.93911 0.95877 0.92388 0.91472 0.92442 0.93015 0.90628 0.73171 0.87880 0.90179 0.85032 0.84928 0.88164 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.05 37.15 0.34 -2.89 16 2 C 0.24 5.95 2.45 -69.09 -0.17 5.78 16 3 H 0.07 2.02 5.29 -51.93 -0.27 1.75 16 4 C -0.60 -16.29 8.27 -34.44 -0.28 -16.57 16 5 H 0.05 1.46 7.42 -52.48 -0.39 1.07 16 6 C 0.03 0.74 5.45 -17.82 -0.10 0.64 16 7 N -0.90 -26.83 13.63 55.43 0.76 -26.07 16 8 Si 1.08 24.77 29.91 -169.99 -5.08 19.68 16 9 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.58 -12.64 2.70 -175.26 -0.47 -13.11 16 13 C 0.07 1.34 8.05 59.85 0.48 1.82 16 14 C 0.53 11.26 6.40 -10.98 -0.07 11.19 16 15 O -0.53 -13.20 14.86 5.56 0.08 -13.12 16 16 C -0.08 -1.40 0.53 -155.10 -0.08 -1.48 16 17 C 0.51 7.70 5.00 36.00 0.18 7.88 16 18 O -0.51 -7.97 15.18 -18.75 -0.28 -8.25 16 19 O -0.50 -6.63 13.28 -39.25 -0.52 -7.15 16 20 C -0.08 -1.12 5.79 -26.78 -0.16 -1.27 16 21 C -0.16 -2.21 10.78 -35.65 -0.38 -2.60 16 22 C -0.16 -2.25 10.78 -35.70 -0.38 -2.64 16 23 C -0.09 -1.37 5.07 -26.84 -0.14 -1.51 16 24 H 0.04 0.89 6.88 -51.93 -0.36 0.53 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.27 8.23 6.61 -40.82 -0.27 7.96 16 28 H 0.06 0.99 6.41 -51.93 -0.33 0.66 16 29 H 0.05 0.85 4.19 -51.93 -0.22 0.63 16 30 H 0.08 1.34 6.54 -51.93 -0.34 1.00 16 31 H 0.41 3.15 9.10 45.56 0.41 3.56 16 32 H 0.10 1.69 6.91 -51.92 -0.36 1.33 16 33 H 0.08 0.99 7.88 -51.93 -0.41 0.59 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.10 1.40 6.94 -51.93 -0.36 1.04 16 37 H 0.10 1.57 5.14 -51.93 -0.27 1.30 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -33.14 300.20 -5.41 -38.56 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.65 Total: 6.58 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -0.77 Total: -1.64 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.28 Total: -39.18 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.72 Total: -28.52 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.14 -5.41 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.798 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds