Wall clock time and date at job start Mon Mar 30 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47464 * 2 1 4 4 C 1.50699 * 109.47433 * 240.00073 * 2 1 3 5 5 H 1.08005 * 120.00461 * 273.82008 * 4 2 1 6 6 C 1.37882 * 119.99972 * 93.81681 * 4 2 1 7 7 N 1.31516 * 119.99761 * 353.48314 * 6 4 2 8 8 Si 1.86798 * 120.00132 * 173.48613 * 6 4 2 9 9 H 1.48502 * 109.47124 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47275 * 119.99779 * 8 6 4 11 11 H 1.48504 * 109.46986 * 239.99888 * 8 6 4 12 12 N 1.46497 * 109.47191 * 120.00396 * 2 1 3 13 13 C 1.46498 * 120.00042 * 59.99860 * 12 2 1 14 14 C 1.34782 * 119.99880 * 240.00396 * 12 2 1 15 15 O 1.21275 * 120.00252 * 5.12636 * 14 12 2 16 16 C 1.50706 * 119.99595 * 185.13038 * 14 12 2 17 17 C 1.50697 * 110.91689 * 293.88533 * 16 14 12 18 18 O 1.20822 * 120.00003 * 126.02669 * 17 16 14 19 19 O 1.34227 * 119.99979 * 306.03410 * 17 16 14 20 20 C 1.54637 * 111.03403 * 169.91926 * 16 14 12 21 21 C 1.51204 * 104.67738 * 266.59166 * 20 16 14 22 22 C 1.30533 * 111.11133 * 343.55447 * 21 20 16 23 23 C 1.51100 * 111.10208 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.47461 * 174.60119 * 1 2 3 25 25 H 1.08999 * 109.47372 * 294.60837 * 1 2 3 26 26 H 1.09004 * 109.46996 * 54.60848 * 1 2 3 27 27 H 0.96998 * 120.00215 * 4.65366 * 7 6 4 28 28 H 1.09000 * 109.47234 * 94.78817 * 13 12 2 29 29 H 1.09003 * 109.46982 * 214.78288 * 13 12 2 30 30 H 1.09001 * 109.47100 * 334.78541 * 13 12 2 31 31 H 0.96698 * 117.00104 * 179.97438 * 19 17 16 32 32 H 1.09008 * 110.38592 * 25.41271 * 20 16 14 33 33 H 1.09003 * 110.38492 * 147.78818 * 20 16 14 34 34 H 1.07993 * 124.44082 * 163.53785 * 21 20 16 35 35 H 1.08003 * 124.44718 * 180.02562 * 22 21 20 36 36 H 1.09000 * 110.38707 * 257.61968 * 23 22 21 37 37 H 1.09005 * 110.38355 * 135.24758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1537 -1.7836 -1.2228 6 6 2.3371 0.0097 -2.3661 7 7 2.0696 1.2963 -2.4204 8 14 3.1298 -0.8420 -3.8274 9 1 3.3261 -2.2805 -3.5153 10 1 2.2492 -0.7085 -5.0157 11 1 4.4449 -0.2139 -4.1129 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0834 15 8 3.0096 1.1491 1.9409 16 6 3.3905 -0.7756 3.2525 17 6 2.3152 -1.2461 4.1976 18 8 2.2535 -2.4115 4.5106 19 8 1.4257 -0.3706 4.6916 20 6 4.4328 0.0981 3.9883 21 6 5.7566 -0.2731 3.3589 22 6 5.6644 -1.3942 2.6966 23 6 4.2644 -1.9576 2.7730 24 1 -0.3634 -1.0231 -0.0967 25 1 -0.3634 0.4279 0.9343 26 1 -0.3633 0.5952 -0.8378 27 1 1.7207 1.7525 -1.6388 28 1 2.4577 -2.7360 1.0463 29 1 1.5405 -2.2648 2.4972 30 1 0.7316 -2.3225 0.9126 31 1 0.7543 -0.7194 5.2938 32 1 4.2204 1.1557 3.8315 33 1 4.4397 -0.1349 5.0531 34 1 6.6597 0.3126 3.4457 35 1 6.4815 -1.8581 2.1641 36 1 4.2231 -2.7759 3.4918 37 1 3.9378 -2.2975 1.7901 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:20 Heat of formation + Delta-G solvation = -121.788867 kcal Electronic energy + Delta-G solvation = -21767.715630 eV Core-core repulsion = 18509.897694 eV Total energy + Delta-G solvation = -3257.817936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.62224 -40.58229 -38.75371 -37.54416 -37.10811 -35.03567 -32.17345 -30.72283 -29.25508 -27.91318 -26.92845 -24.99308 -24.17727 -21.96082 -20.47673 -20.15178 -19.05926 -18.84926 -18.55712 -17.58027 -17.41681 -16.75625 -16.14244 -15.73236 -15.40247 -15.15358 -14.90779 -14.35509 -13.99260 -13.89734 -13.65981 -13.54623 -13.34307 -13.28388 -12.99955 -12.86423 -12.63714 -12.59319 -12.48100 -12.20277 -12.11318 -11.91615 -11.81438 -10.91550 -10.82549 -10.59525 -9.91576 -9.45720 -8.66200 -6.40978 0.79594 1.26470 1.36345 1.52926 1.61391 1.76787 1.92861 2.05088 2.55282 3.14738 3.19337 3.26911 3.49819 4.07137 4.13026 4.18972 4.25653 4.39496 4.40388 4.54304 4.57118 4.63512 4.69633 4.71261 4.78308 4.89404 4.98836 5.11401 5.24041 5.32316 5.49615 5.66826 5.84810 5.86035 6.14476 6.45896 6.59540 6.76730 7.11970 7.41872 8.70527 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.021893 B = 0.007099 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.666988 B = 3943.065455 C = 4371.842818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.236 3.764 3 H 0.025 0.975 4 C -0.605 4.605 5 H 0.061 0.939 6 C -0.027 4.027 7 N -0.931 5.931 8 Si 1.120 2.880 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.588 5.588 13 C 0.074 3.926 14 C 0.521 3.479 15 O -0.578 6.578 16 C -0.085 4.085 17 C 0.515 3.485 18 O -0.511 6.511 19 O -0.506 6.506 20 C -0.077 4.077 21 C -0.165 4.165 22 C -0.170 4.170 23 C -0.088 4.088 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.257 0.743 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.434 0.566 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -8.453 13.640 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.135 3.865 3 H 0.043 0.957 4 C -0.643 4.643 5 H 0.079 0.921 6 C -0.227 4.227 7 N -0.568 5.568 8 Si 0.942 3.058 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.318 5.318 13 C -0.068 4.068 14 C 0.308 3.692 15 O -0.459 6.459 16 C -0.089 4.089 17 C 0.357 3.643 18 O -0.400 6.400 19 O -0.320 6.320 20 C -0.114 4.114 21 C -0.183 4.183 22 C -0.188 4.188 23 C -0.124 4.124 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.297 0.703 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.135 0.865 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.573 -7.774 11.842 14.609 hybrid contribution -1.207 0.025 1.748 2.124 sum 2.366 -7.750 13.589 15.822 Atomic orbital electron populations 1.21972 0.96968 1.01102 0.98921 1.18918 0.91653 0.93283 0.82677 0.95661 1.22382 1.47999 0.95487 0.98476 0.92088 1.27302 0.94808 0.95940 1.04605 1.70862 1.43182 1.11173 1.31619 0.82901 0.75755 0.74836 0.72301 1.18921 1.20407 1.21242 1.48319 1.48457 1.12874 1.22183 1.22040 1.02111 0.81331 1.01320 1.20130 0.78724 0.86778 0.83607 1.90619 1.61883 1.17043 1.76305 1.21565 0.94205 1.00293 0.92857 1.22172 0.80521 0.83435 0.78182 1.90707 1.72266 1.18675 1.58380 1.84582 1.42322 1.43884 1.61250 1.21345 0.90443 0.99898 0.99682 1.23391 0.98235 0.97567 0.99109 1.23412 0.97314 0.97779 1.00250 1.21620 0.91860 0.95553 1.03390 0.92023 0.94616 0.94132 0.93261 0.91470 0.91088 0.90212 0.70311 0.89962 0.87453 0.82913 0.82848 0.86519 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 9.05 71.98 0.65 -5.25 16 2 C 0.24 12.07 2.45 44.24 0.11 12.18 16 3 H 0.03 1.54 5.29 -2.38 -0.01 1.52 16 4 C -0.61 -32.62 8.27 25.60 0.21 -32.40 16 5 H 0.06 3.16 7.42 -2.91 -0.02 3.13 16 6 C -0.03 -1.52 5.45 84.66 0.46 -1.06 16 7 N -0.93 -57.16 13.63 21.45 0.29 -56.87 16 8 Si 1.12 49.38 29.91 68.60 2.05 51.44 16 9 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.59 -25.37 2.70 -826.80 -2.23 -27.59 16 13 C 0.07 2.54 8.05 127.77 1.03 3.57 16 14 C 0.52 22.26 6.40 87.66 0.56 22.82 16 15 O -0.58 -29.66 14.86 -3.01 -0.04 -29.70 16 16 C -0.08 -2.70 0.53 -52.56 -0.03 -2.73 16 17 C 0.51 14.40 5.00 71.23 0.36 14.76 16 18 O -0.51 -14.44 15.18 21.98 0.33 -14.10 16 19 O -0.51 -12.22 13.28 -51.38 -0.68 -12.90 16 20 C -0.08 -2.17 5.79 30.57 0.18 -1.99 16 21 C -0.17 -4.28 10.78 26.29 0.28 -4.00 16 22 C -0.17 -4.41 10.78 26.25 0.28 -4.12 16 23 C -0.09 -2.47 5.07 30.53 0.15 -2.32 16 24 H 0.06 2.50 6.88 -2.39 -0.02 2.48 16 25 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.26 16.26 6.61 -92.71 -0.61 15.65 16 28 H 0.07 2.18 6.41 -2.39 -0.02 2.16 16 29 H 0.07 2.15 4.19 -2.39 -0.01 2.14 16 30 H 0.08 2.64 6.54 -2.39 -0.02 2.63 16 31 H 0.43 5.42 9.10 -74.06 -0.67 4.75 16 32 H 0.08 2.71 6.91 -2.38 -0.02 2.69 16 33 H 0.11 2.41 7.88 -2.39 -0.02 2.39 16 34 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.12 2.91 6.94 -2.39 -0.02 2.89 16 37 H 0.08 2.57 5.14 -2.38 -0.01 2.55 16 Total: -1.00 -72.88 300.20 4.56 -68.31 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.59 Total: 21.98 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 4.25 Total: -0.56 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.94 Total: -84.46 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.39 Total: -56.70 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.44 kcal Total: -72.88 4.56 -68.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.475 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds