Wall clock time and date at job start Mon Mar 30 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46724 * 2 1 4 4 C 1.50702 * 109.47133 * 120.00160 * 2 1 3 5 5 H 1.07999 * 119.99897 * 120.00231 * 4 2 1 6 6 C 1.37876 * 119.99800 * 299.99976 * 4 2 1 7 7 N 1.31519 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00343 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46894 * 89.99701 * 8 6 4 10 10 H 1.48496 * 109.47303 * 209.99909 * 8 6 4 11 11 H 1.48500 * 109.47122 * 330.00175 * 8 6 4 12 12 N 1.46506 * 109.47130 * 240.00251 * 2 1 3 13 13 C 1.46507 * 119.99758 * 294.92429 * 12 2 1 14 14 C 1.34776 * 120.00064 * 114.92386 * 12 2 1 15 15 O 1.21274 * 120.00023 * 184.34905 * 14 12 2 16 16 C 1.50697 * 119.99849 * 4.34560 * 14 12 2 17 17 C 1.50707 * 110.91381 * 65.72631 * 16 14 12 18 18 O 1.20818 * 120.00529 * 127.43236 * 17 16 14 19 19 O 1.34238 * 119.99634 * 307.42825 * 17 16 14 20 20 C 1.54636 * 111.04042 * 301.75647 * 16 14 12 21 21 C 1.51202 * 104.67300 * 266.59128 * 20 16 14 22 22 C 1.30528 * 111.11477 * 343.55150 * 21 20 16 23 23 C 1.51092 * 111.10348 * 0.02562 * 22 21 20 24 24 H 1.09005 * 109.46891 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47100 * 299.99292 * 1 2 3 26 26 H 1.08997 * 109.47446 * 60.00182 * 1 2 3 27 27 H 0.97002 * 119.99731 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47000 * 264.87280 * 13 12 2 29 29 H 1.08996 * 109.46481 * 144.87397 * 13 12 2 30 30 H 1.08999 * 109.47094 * 24.87443 * 13 12 2 31 31 H 0.96693 * 116.99588 * 179.97438 * 19 17 16 32 32 H 1.09000 * 110.38310 * 25.41756 * 20 16 14 33 33 H 1.08998 * 110.38451 * 147.78787 * 20 16 14 34 34 H 1.08008 * 124.43847 * 163.54150 * 21 20 16 35 35 H 1.08005 * 124.44483 * 180.02562 * 22 21 20 36 36 H 1.09002 * 110.38476 * 257.62091 * 23 22 21 37 37 H 1.09003 * 110.39017 * 135.24685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6260 1.2798 2.6542 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8492 2.1773 1.4924 12 7 2.0184 -0.6906 -1.1962 13 6 1.7584 -2.1215 -1.3734 14 6 2.7068 -0.0096 -2.1337 15 8 3.0426 -0.5617 -3.1599 16 6 3.0590 1.4380 -1.9067 17 6 4.0244 1.5831 -0.7586 18 8 5.0528 2.1992 -0.9081 19 8 3.7415 1.0277 0.4304 20 6 1.7887 2.2887 -1.6748 21 6 1.4276 2.8189 -3.0440 22 6 2.4302 2.7048 -3.8719 23 6 3.6269 2.0792 -3.1940 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.9033 -0.5281 4.4375 28 1 2.6138 -2.6934 -1.0139 29 1 1.5980 -2.3333 -2.4305 30 1 0.8700 -2.4021 -0.8077 31 1 4.3912 1.1474 1.1364 32 1 0.9828 1.6685 -1.2823 33 1 2.0022 3.1116 -0.9927 34 1 0.4660 3.2371 -3.3029 35 1 2.4074 3.0167 -4.9057 36 1 4.3639 2.8425 -2.9444 37 1 4.0706 1.3168 -3.8344 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:23 Heat of formation + Delta-G solvation = -71.760602 kcal Electronic energy + Delta-G solvation = -22473.007719 eV Core-core repulsion = 19217.359171 eV Total energy + Delta-G solvation = -3255.648547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15444 -38.88672 -37.29999 -36.16198 -35.32082 -32.59616 -30.50174 -30.19234 -28.15991 -26.29189 -25.24983 -23.35108 -22.18631 -20.50909 -19.25055 -18.34765 -17.38797 -17.16169 -16.76348 -16.20779 -15.43054 -15.13846 -14.71991 -14.37182 -13.89670 -13.68726 -13.09243 -12.76091 -12.55357 -12.43875 -12.35467 -11.99590 -11.90914 -11.72405 -11.51337 -11.34729 -11.07446 -10.98230 -10.83253 -10.72788 -10.26387 -10.06549 -9.81994 -9.43050 -9.20649 -8.79766 -8.68378 -7.85168 -6.20726 -4.17456 2.30935 2.42306 2.94187 3.13199 3.20937 3.27198 3.59884 3.66333 4.24808 4.39107 4.64877 4.90109 5.09513 5.26304 5.48262 5.62662 5.69304 5.77332 5.93402 5.95017 6.08196 6.09676 6.12154 6.15866 6.21182 6.32691 6.45472 6.55364 6.63980 6.82002 6.93504 6.99401 7.26727 7.54013 7.98637 8.36350 8.44642 8.64820 8.83466 9.39361 10.91815 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.020852 B = 0.009294 C = 0.008789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.456847 B = 3012.033741 C = 3185.191820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.216 3.784 3 H 0.076 0.924 4 C -0.495 4.495 5 H 0.080 0.920 6 C 0.076 3.924 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.266 1.266 12 N -0.574 5.574 13 C 0.098 3.902 14 C 0.529 3.471 15 O -0.553 6.553 16 C -0.079 4.079 17 C 0.486 3.514 18 O -0.523 6.523 19 O -0.447 6.447 20 C -0.099 4.099 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.080 4.080 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.265 0.735 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.402 0.598 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 5.948 -8.512 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.114 3.886 3 H 0.093 0.907 4 C -0.533 4.533 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.534 5.534 8 Si 0.707 3.293 9 H -0.206 1.206 10 H -0.223 1.223 11 H -0.191 1.191 12 N -0.303 5.303 13 C -0.045 4.045 14 C 0.314 3.686 15 O -0.433 6.433 16 C -0.084 4.084 17 C 0.328 3.672 18 O -0.414 6.414 19 O -0.256 6.256 20 C -0.136 4.136 21 C -0.190 4.190 22 C -0.169 4.169 23 C -0.117 4.117 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.261 0.739 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.294 5.719 -9.135 11.019 hybrid contribution -0.291 0.879 0.927 1.311 sum -2.585 6.598 -8.207 10.843 Atomic orbital electron populations 1.22674 0.99598 1.01767 0.99199 1.19909 0.89494 0.95543 0.83664 0.90657 1.20929 1.31313 1.13231 0.87814 0.90230 1.24793 0.95818 0.96297 0.95682 1.69871 1.45552 1.40087 0.97932 0.87056 0.80898 0.84112 0.77241 1.20619 1.22337 1.19142 1.47840 1.52094 1.09634 1.20686 1.21444 1.01591 0.80767 1.00709 1.19503 0.78924 0.86627 0.83521 1.90612 1.55451 1.69738 1.27467 1.21398 0.96487 0.96336 0.94137 1.22669 0.84911 0.75106 0.84497 1.90640 1.26427 1.40219 1.84076 1.85417 1.50691 1.69317 1.20208 1.21838 0.95528 0.98933 0.97263 1.23196 0.99246 1.01854 0.94724 1.23210 0.94928 0.99560 0.99202 1.21305 0.97521 1.00333 0.92538 0.92069 0.92903 0.94588 0.92522 0.93006 0.92284 0.90612 0.73905 0.87668 0.89431 0.85151 0.85180 0.88350 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 8.21 37.16 0.31 -3.03 16 2 C 0.22 4.43 0.26 -69.08 -0.02 4.42 16 3 H 0.08 1.54 1.78 -51.93 -0.09 1.44 16 4 C -0.49 -11.90 6.84 -34.44 -0.24 -12.13 16 5 H 0.08 2.16 7.71 -52.49 -0.40 1.75 16 6 C 0.08 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -24.60 13.96 55.43 0.77 -23.82 16 8 Si 0.88 19.37 24.37 -169.99 -4.14 15.23 16 9 H -0.28 -6.12 6.87 56.52 0.39 -5.73 16 10 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.46 6.53 56.52 0.37 -5.09 16 12 N -0.57 -11.41 2.72 -175.26 -0.48 -11.89 16 13 C 0.10 1.78 9.39 59.85 0.56 2.34 16 14 C 0.53 10.57 6.50 -10.99 -0.07 10.50 16 15 O -0.55 -11.99 15.15 5.56 0.08 -11.90 16 16 C -0.08 -1.42 0.56 -155.10 -0.09 -1.50 16 17 C 0.49 9.14 6.86 36.01 0.25 9.39 16 18 O -0.52 -10.37 16.25 -18.74 -0.30 -10.68 16 19 O -0.45 -8.48 7.79 -39.28 -0.31 -8.78 16 20 C -0.10 -1.58 4.56 -26.78 -0.12 -1.70 16 21 C -0.17 -2.34 10.78 -35.65 -0.38 -2.72 16 22 C -0.15 -2.05 10.77 -35.70 -0.38 -2.43 16 23 C -0.08 -1.28 5.62 -26.84 -0.15 -1.43 16 24 H 0.06 1.13 6.90 -51.93 -0.36 0.78 16 25 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 26 H 0.04 0.60 6.81 -51.93 -0.35 0.25 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.01 7.52 -51.93 -0.39 0.62 16 30 H 0.08 1.30 6.73 -51.93 -0.35 0.95 16 31 H 0.40 6.39 9.10 45.56 0.41 6.81 16 32 H 0.11 1.77 3.64 -51.93 -0.19 1.58 16 33 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 36 H 0.10 1.54 6.92 -51.93 -0.36 1.18 16 37 H 0.10 1.63 6.91 -51.93 -0.36 1.27 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -29.62 284.30 -4.00 -33.61 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -3.47 Total: 10.43 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -0.44 Total: 3.52 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.30 Total: -35.71 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.53 Total: -31.36 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.14 Total: 15.23 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.62 -4.00 -33.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.149 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds