Wall clock time and date at job start Mon Mar 30 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46819 * 2 1 4 4 C 1.50695 * 109.47377 * 240.00070 * 2 1 3 5 5 H 1.08004 * 119.99661 * 245.65031 * 4 2 1 6 6 C 1.37876 * 120.00180 * 65.64719 * 4 2 1 7 7 N 1.31509 * 119.99914 * 197.70112 * 6 4 2 8 8 Si 1.86800 * 119.99796 * 17.43128 * 6 4 2 9 9 H 1.48506 * 109.46671 * 180.27595 * 8 6 4 10 10 H 1.48496 * 109.47128 * 300.27129 * 8 6 4 11 11 H 1.48496 * 109.47186 * 60.27494 * 8 6 4 12 12 C 1.50698 * 109.46786 * 119.99317 * 2 1 3 13 13 O 1.21285 * 119.99606 * 120.00790 * 12 2 1 14 14 N 1.34774 * 120.00805 * 300.00715 * 12 2 1 15 15 C 1.46493 * 120.00490 * 180.02562 * 14 12 2 16 16 H 1.09006 * 110.43524 * 327.53841 * 15 14 12 17 17 C 1.54885 * 110.48949 * 90.21980 * 15 14 12 18 18 C 1.54884 * 102.75158 * 156.62138 * 17 15 14 19 19 H 1.09004 * 110.59974 * 80.79524 * 18 17 15 20 20 C 1.50697 * 110.48991 * 203.38318 * 18 17 15 21 21 O 1.20820 * 120.00592 * 114.77574 * 20 18 17 22 22 O 1.34232 * 120.00043 * 294.77198 * 20 18 17 23 23 C 1.54265 * 104.19702 * 322.06152 * 18 17 15 24 24 H 1.09000 * 117.76253 * 243.25386 * 23 18 17 25 25 C 1.53003 * 118.20270 * 87.78531 * 23 18 17 26 26 C 1.52998 * 60.37917 * 266.38707 * 25 23 18 27 27 H 1.09003 * 119.29845 * 247.75487 * 26 25 23 28 28 H 1.09007 * 109.46750 * 186.35882 * 1 2 3 29 29 H 1.08993 * 109.47701 * 306.35700 * 1 2 3 30 30 H 1.09005 * 109.46910 * 66.36525 * 1 2 3 31 31 H 0.97000 * 120.00194 * 354.66342 * 7 6 4 32 32 H 0.97005 * 119.99398 * 359.97438 * 14 12 2 33 33 H 1.08999 * 110.76221 * 274.94021 * 17 15 14 34 34 H 1.09003 * 110.75647 * 38.30878 * 17 15 14 35 35 H 0.96691 * 117.00431 * 180.02562 * 22 20 18 36 36 H 1.08993 * 117.46305 * 158.78966 * 25 23 18 37 37 H 1.09002 * 117.43697 * 13.99231 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5760 -1.6386 -1.1339 6 6 1.7981 -0.1754 -2.4793 7 7 1.9130 -0.9301 -3.5501 8 14 1.3099 1.6197 -2.6498 9 1 1.1105 1.9441 -4.0852 10 1 0.0468 1.8618 -1.9076 11 1 2.3843 2.4799 -2.0925 12 6 2.0323 -0.7103 1.2306 13 8 2.7297 -1.6963 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 1 2.2814 -2.0106 3.4641 17 6 3.5578 -0.3536 4.0965 18 6 3.6120 -0.7195 5.6005 19 1 3.9294 -1.7539 5.7323 20 6 4.5385 0.2131 6.3373 21 8 4.0991 0.9631 7.1764 22 8 5.8522 0.2105 6.0614 23 6 2.1600 -0.5341 6.0876 24 1 1.9711 0.2298 6.8418 25 6 1.1993 -1.7185 5.9646 26 6 1.2593 -0.6744 4.8479 27 1 0.4009 -0.0241 4.6790 28 1 -0.3633 -1.0214 0.1138 29 1 -0.3634 0.6092 0.8275 30 1 -0.3633 0.4120 -0.9415 31 1 2.2372 -1.8408 -3.4691 32 1 1.1492 0.5390 2.5436 33 1 4.3774 -0.8252 3.5544 34 1 3.5757 0.7279 3.9613 35 1 6.4067 0.8259 6.5600 36 1 0.3176 -1.7191 6.6052 37 1 1.6327 -2.6977 5.7609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:45 Heat of formation + Delta-G solvation = -110.225291 kcal Electronic energy + Delta-G solvation = -20397.515801 eV Core-core repulsion = 17140.199299 eV Total energy + Delta-G solvation = -3257.316502 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00682 -39.56625 -38.30566 -36.32224 -33.79537 -33.75193 -31.85940 -31.04181 -27.82630 -24.82704 -23.70514 -22.86385 -22.20938 -20.64708 -19.76706 -19.21618 -18.29567 -17.49348 -17.24495 -16.18507 -15.95791 -15.39860 -14.93534 -14.32460 -14.13209 -13.82953 -13.40279 -13.28638 -13.14195 -12.65730 -12.42725 -11.90778 -11.80731 -11.73858 -11.65279 -11.44757 -11.05989 -11.02591 -10.69657 -10.55175 -10.51724 -10.15042 -9.92636 -9.80061 -8.87209 -8.77471 -8.62356 -8.16180 -6.44500 -4.02071 1.95456 2.75172 3.33049 3.34218 3.40487 3.53230 3.58128 3.67731 4.10873 4.48747 4.52905 4.72801 4.80733 4.96700 4.99503 5.19329 5.22980 5.28418 5.32055 5.44785 5.55353 5.81033 5.88085 5.95885 5.99025 6.17684 6.19377 6.25763 6.41961 6.52580 6.89097 6.96126 7.23696 7.65277 7.80404 8.25485 8.48795 9.05137 9.09441 9.66915 10.97588 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.004413 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.212675 B = 6343.437432 C = 6625.293346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.002 3.998 3 H 0.044 0.956 4 C -0.589 4.589 5 H 0.074 0.926 6 C 0.029 3.971 7 N -0.905 5.905 8 Si 1.044 2.956 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.284 1.284 12 C 0.528 3.472 13 O -0.535 6.535 14 N -0.739 5.739 15 C 0.171 3.829 16 H 0.097 0.903 17 C -0.119 4.119 18 C -0.058 4.058 19 H 0.116 0.884 20 C 0.493 3.507 21 O -0.517 6.517 22 O -0.513 6.513 23 C -0.157 4.157 24 H 0.129 0.871 25 C -0.143 4.143 26 C -0.168 4.168 27 H 0.120 0.880 28 H 0.047 0.953 29 H 0.026 0.974 30 H 0.064 0.936 31 H 0.269 0.731 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.409 0.591 36 H 0.105 0.895 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 3.286 20.562 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.061 0.939 4 C -0.627 4.627 5 H 0.092 0.908 6 C -0.176 4.176 7 N -0.539 5.539 8 Si 0.872 3.128 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.409 6.409 14 N -0.392 5.392 15 C 0.065 3.935 16 H 0.115 0.885 17 C -0.158 4.158 18 C -0.077 4.077 19 H 0.134 0.866 20 C 0.335 3.665 21 O -0.405 6.405 22 O -0.324 6.324 23 C -0.175 4.175 24 H 0.147 0.853 25 C -0.180 4.180 26 C -0.187 4.187 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.221 3.624 19.314 19.652 hybrid contribution 0.625 -0.298 1.628 1.769 sum 0.845 3.326 20.942 21.222 Atomic orbital electron populations 1.22180 0.97009 1.00508 1.00481 1.19198 0.93664 0.96859 0.92273 0.93862 1.21939 1.40343 1.10718 0.89697 0.90762 1.25750 0.94853 1.04914 0.92069 1.70828 1.41675 1.09998 1.31441 0.84073 0.76913 0.75524 0.76278 1.21027 1.20047 1.21034 1.21496 0.78546 0.84231 0.83980 1.90558 1.37341 1.26515 1.86509 1.46236 1.55338 1.32466 1.05161 1.21168 0.90424 0.98307 0.83616 0.88483 1.23083 0.99475 1.02388 0.90851 1.21351 0.91561 0.99040 0.95752 0.86646 1.23220 0.81317 0.81871 0.80080 1.90690 1.77108 1.39944 1.32738 1.84571 1.20345 1.62549 1.64938 1.23124 0.89041 1.03365 1.01935 0.85306 1.23100 1.00559 0.94173 1.00156 1.23516 1.00974 1.04395 0.89821 0.86208 0.93365 0.95493 0.91744 0.92065 0.76955 0.89238 0.90335 0.73208 0.87673 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.72 37.16 0.32 -2.61 16 2 C 0.00 0.04 2.22 -92.92 -0.21 -0.16 16 3 H 0.04 0.96 6.80 -51.93 -0.35 0.61 16 4 C -0.59 -16.89 8.63 -34.44 -0.30 -17.19 16 5 H 0.07 2.42 7.02 -52.48 -0.37 2.05 16 6 C 0.03 0.83 5.29 -17.82 -0.09 0.74 16 7 N -0.91 -28.00 13.69 55.43 0.76 -27.24 16 8 Si 1.04 24.37 26.29 -169.99 -4.47 19.90 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.27 -5.72 5.75 56.52 0.33 -5.40 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.53 11.40 7.15 -10.99 -0.08 11.32 16 13 O -0.53 -13.61 15.12 5.55 0.08 -13.53 16 14 N -0.74 -11.69 5.06 -52.20 -0.26 -11.95 16 15 C 0.17 2.30 3.02 -66.28 -0.20 2.10 16 16 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 17 C -0.12 -1.48 5.99 -24.74 -0.15 -1.63 16 18 C -0.06 -0.59 3.16 -90.12 -0.28 -0.88 16 19 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 20 C 0.49 5.38 7.62 36.00 0.27 5.65 16 21 O -0.52 -6.86 16.28 -18.75 -0.31 -7.16 16 22 O -0.51 -4.59 13.42 -39.26 -0.53 -5.12 16 23 C -0.16 -1.55 6.19 -89.50 -0.55 -2.11 16 24 H 0.13 1.36 7.08 -51.93 -0.37 1.00 16 25 C -0.14 -1.25 10.07 -26.73 -0.27 -1.52 16 26 C -0.17 -1.76 6.52 -89.50 -0.58 -2.35 16 27 H 0.12 1.15 8.06 -51.93 -0.42 0.74 16 28 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.03 0.43 7.75 -51.93 -0.40 0.03 16 30 H 0.06 1.38 4.88 -51.93 -0.25 1.13 16 31 H 0.27 8.41 8.73 -40.82 -0.36 8.05 16 32 H 0.40 5.24 8.13 -40.82 -0.33 4.91 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.08 0.99 8.05 -51.93 -0.42 0.57 16 35 H 0.41 1.87 9.10 45.56 0.41 2.28 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -35.14 308.26 -6.43 -41.57 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.23 Total: 7.53 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -2.12 Total: -8.63 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.49 Total: -39.19 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.75 Total: -25.82 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.47 Total: 19.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.14 -6.43 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.660 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds