Wall clock time and date at job start Mon Mar 30 2020 00:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46819 * 2 1 4 4 C 1.50695 * 109.47377 * 240.00070 * 2 1 3 5 5 H 1.08004 * 119.99661 * 245.65031 * 4 2 1 6 6 C 1.37876 * 120.00180 * 65.64719 * 4 2 1 7 7 N 1.31509 * 119.99914 * 197.70112 * 6 4 2 8 8 Si 1.86800 * 119.99796 * 17.43128 * 6 4 2 9 9 H 1.48506 * 109.46671 * 180.27595 * 8 6 4 10 10 H 1.48496 * 109.47128 * 300.27129 * 8 6 4 11 11 H 1.48496 * 109.47186 * 60.27494 * 8 6 4 12 12 C 1.50698 * 109.46786 * 119.99317 * 2 1 3 13 13 O 1.21285 * 119.99606 * 120.00790 * 12 2 1 14 14 N 1.34774 * 120.00805 * 300.00715 * 12 2 1 15 15 C 1.46493 * 120.00490 * 180.02562 * 14 12 2 16 16 H 1.09006 * 110.43524 * 327.53841 * 15 14 12 17 17 C 1.54885 * 110.48949 * 90.21980 * 15 14 12 18 18 C 1.54884 * 102.75158 * 156.62138 * 17 15 14 19 19 H 1.09004 * 110.59974 * 80.79524 * 18 17 15 20 20 C 1.50697 * 110.48991 * 203.38318 * 18 17 15 21 21 O 1.20820 * 120.00592 * 114.77574 * 20 18 17 22 22 O 1.34232 * 120.00043 * 294.77198 * 20 18 17 23 23 C 1.54265 * 104.19702 * 322.06152 * 18 17 15 24 24 H 1.09000 * 117.76253 * 243.25386 * 23 18 17 25 25 C 1.53003 * 118.20270 * 87.78531 * 23 18 17 26 26 C 1.52998 * 60.37917 * 266.38707 * 25 23 18 27 27 H 1.09003 * 119.29845 * 247.75487 * 26 25 23 28 28 H 1.09007 * 109.46750 * 186.35882 * 1 2 3 29 29 H 1.08993 * 109.47701 * 306.35700 * 1 2 3 30 30 H 1.09005 * 109.46910 * 66.36525 * 1 2 3 31 31 H 0.97000 * 120.00194 * 354.66342 * 7 6 4 32 32 H 0.97005 * 119.99398 * 359.97438 * 14 12 2 33 33 H 1.08999 * 110.76221 * 274.94021 * 17 15 14 34 34 H 1.09003 * 110.75647 * 38.30878 * 17 15 14 35 35 H 0.96691 * 117.00431 * 180.02562 * 22 20 18 36 36 H 1.08993 * 117.46305 * 158.78966 * 25 23 18 37 37 H 1.09002 * 117.43697 * 13.99231 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5760 -1.6386 -1.1339 6 6 1.7981 -0.1754 -2.4793 7 7 1.9130 -0.9301 -3.5501 8 14 1.3099 1.6197 -2.6498 9 1 1.1105 1.9441 -4.0852 10 1 0.0468 1.8618 -1.9076 11 1 2.3843 2.4799 -2.0925 12 6 2.0323 -0.7103 1.2306 13 8 2.7297 -1.6963 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9401 3.6508 16 1 2.2814 -2.0106 3.4641 17 6 3.5578 -0.3536 4.0965 18 6 3.6120 -0.7195 5.6005 19 1 3.9294 -1.7539 5.7323 20 6 4.5385 0.2131 6.3373 21 8 4.0991 0.9631 7.1764 22 8 5.8522 0.2105 6.0614 23 6 2.1600 -0.5341 6.0876 24 1 1.9711 0.2298 6.8418 25 6 1.1993 -1.7185 5.9646 26 6 1.2593 -0.6744 4.8479 27 1 0.4009 -0.0241 4.6790 28 1 -0.3633 -1.0214 0.1138 29 1 -0.3634 0.6092 0.8275 30 1 -0.3633 0.4120 -0.9415 31 1 2.2372 -1.8408 -3.4691 32 1 1.1492 0.5390 2.5436 33 1 4.3774 -0.8252 3.5544 34 1 3.5757 0.7279 3.9613 35 1 6.4067 0.8259 6.5600 36 1 0.3176 -1.7191 6.6052 37 1 1.6327 -2.6977 5.7609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211657.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:45 Heat of formation + Delta-G solvation = -137.117023 kcal Electronic energy + Delta-G solvation = -20398.681913 eV Core-core repulsion = 17140.199299 eV Total energy + Delta-G solvation = -3258.482615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.91672 -40.78389 -39.60684 -37.14895 -35.78581 -35.18956 -33.21323 -32.58271 -28.98255 -26.77320 -24.95948 -23.71330 -23.59440 -21.67858 -21.00658 -20.50505 -19.46140 -19.12782 -18.30779 -17.73315 -16.95726 -16.62946 -16.18917 -15.57699 -15.52094 -15.19702 -14.99091 -14.42688 -14.23171 -14.01597 -13.90331 -13.45938 -13.33821 -12.88418 -12.78168 -12.57334 -12.54806 -12.32742 -11.94345 -11.91686 -11.62150 -11.57442 -11.33094 -10.97605 -10.75818 -10.58968 -10.30744 -10.00992 -8.75849 -6.34285 1.09865 1.49470 1.59801 1.76224 1.85490 2.00819 2.34694 2.55113 2.55834 3.10498 3.23708 3.71353 3.82749 3.97083 4.05370 4.10599 4.20685 4.32077 4.41907 4.47131 4.48981 4.54207 4.71997 4.85964 4.88739 4.95004 5.04345 5.10298 5.19707 5.26579 5.54359 5.55601 5.62360 5.88509 6.07697 6.63332 6.75756 6.94016 7.42865 7.51758 8.65019 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.028356 B = 0.004413 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.212675 B = 6343.437432 C = 6625.293346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.006 4.006 3 H 0.067 0.933 4 C -0.599 4.599 5 H 0.014 0.986 6 C -0.025 4.025 7 N -0.939 5.939 8 Si 1.087 2.913 9 H -0.293 1.293 10 H -0.224 1.224 11 H -0.262 1.262 12 C 0.527 3.473 13 O -0.588 6.588 14 N -0.714 5.714 15 C 0.165 3.835 16 H 0.075 0.925 17 C -0.115 4.115 18 C -0.055 4.055 19 H 0.129 0.871 20 C 0.499 3.501 21 O -0.541 6.541 22 O -0.513 6.513 23 C -0.152 4.152 24 H 0.128 0.872 25 C -0.129 4.129 26 C -0.172 4.172 27 H 0.137 0.863 28 H 0.033 0.967 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.247 0.753 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.428 0.572 36 H 0.128 0.872 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 5.765 23.179 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.637 4.637 5 H 0.032 0.968 6 C -0.222 4.222 7 N -0.575 5.575 8 Si 0.906 3.094 9 H -0.219 1.219 10 H -0.148 1.148 11 H -0.187 1.187 12 C 0.316 3.684 13 O -0.467 6.467 14 N -0.366 5.366 15 C 0.060 3.940 16 H 0.093 0.907 17 C -0.154 4.154 18 C -0.074 4.074 19 H 0.147 0.853 20 C 0.342 3.658 21 O -0.431 6.431 22 O -0.327 6.327 23 C -0.170 4.170 24 H 0.146 0.854 25 C -0.166 4.166 26 C -0.190 4.190 27 H 0.154 0.846 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.252 0.748 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.290 0.710 36 H 0.146 0.854 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.409 6.120 22.012 22.890 hybrid contribution 1.250 -1.166 0.871 1.918 sum -0.159 4.954 22.883 23.413 Atomic orbital electron populations 1.22052 0.94180 1.00851 1.02393 1.19196 0.95770 0.97155 0.90667 0.91539 1.22056 1.39691 1.09007 0.92911 0.96776 1.27503 0.94129 1.09132 0.91400 1.70991 1.44425 1.09299 1.32823 0.83608 0.79534 0.69525 0.76702 1.21939 1.14760 1.18717 1.21231 0.78181 0.83562 0.85428 1.90548 1.39873 1.28845 1.87401 1.45885 1.54179 1.32443 1.04129 1.21291 0.92128 0.96925 0.83646 0.90676 1.22949 0.98121 1.02053 0.92301 1.21333 0.92325 0.99756 0.94032 0.85348 1.23195 0.81787 0.81282 0.79531 1.90684 1.77643 1.40890 1.33891 1.84537 1.19861 1.63124 1.65140 1.23067 0.88446 1.04167 1.01355 0.85394 1.23257 1.00786 0.93717 0.98796 1.23430 1.01094 1.06115 0.88375 0.84571 0.94797 0.90014 0.92377 0.94447 0.74848 0.91213 0.90259 0.70971 0.85418 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.72 71.98 0.63 -4.54 16 2 C -0.01 -0.27 2.22 -12.29 -0.03 -0.30 16 3 H 0.07 2.73 6.80 -2.39 -0.02 2.71 16 4 C -0.60 -35.47 8.63 25.60 0.22 -35.25 16 5 H 0.01 0.97 7.02 -2.91 -0.02 0.95 16 6 C -0.03 -1.47 5.29 84.66 0.45 -1.03 16 7 N -0.94 -60.58 13.69 21.45 0.29 -60.29 16 8 Si 1.09 47.40 26.29 68.60 1.80 49.20 16 9 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.22 -8.01 5.75 99.48 0.57 -7.44 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 C 0.53 22.62 7.15 87.66 0.63 23.25 16 13 O -0.59 -31.21 15.12 -3.05 -0.05 -31.26 16 14 N -0.71 -21.15 5.06 -437.47 -2.21 -23.37 16 15 C 0.17 4.24 3.02 46.07 0.14 4.37 16 16 H 0.08 2.30 7.55 -2.38 -0.02 2.28 16 17 C -0.12 -2.75 5.99 31.88 0.19 -2.56 16 18 C -0.06 -1.04 3.16 -10.47 -0.03 -1.07 16 19 H 0.13 2.08 8.14 -2.39 -0.02 2.07 16 20 C 0.50 9.98 7.62 71.24 0.54 10.52 16 21 O -0.54 -13.33 16.28 21.98 0.36 -12.97 16 22 O -0.51 -8.30 13.42 -51.44 -0.69 -8.99 16 23 C -0.15 -2.60 6.19 -10.07 -0.06 -2.66 16 24 H 0.13 2.32 7.08 -2.39 -0.02 2.31 16 25 C -0.13 -1.84 10.07 30.59 0.31 -1.53 16 26 C -0.17 -3.07 6.52 -10.07 -0.07 -3.14 16 27 H 0.14 2.03 8.06 -2.39 -0.02 2.02 16 28 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 29 H 0.08 2.19 7.75 -2.39 -0.02 2.17 16 30 H 0.06 2.26 4.88 -2.38 -0.01 2.25 16 31 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 32 H 0.41 9.33 8.13 -92.70 -0.75 8.57 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.08 1.87 8.05 -2.39 -0.02 1.85 16 35 H 0.43 3.08 9.10 -74.06 -0.67 2.40 16 36 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -82.00 308.26 1.93 -80.06 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.49 Total: 21.54 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 2.92 Total: -13.93 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.92 Total: -83.66 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.38 Total: -53.22 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.80 Total: 49.20 kcal Total: -82.00 1.93 -80.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211657.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.053 kcal (2) G-P(sol) polarization free energy of solvation -81.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds