Wall clock time and date at job start Mon Mar 30 2020 00:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47182 * 2 1 4 4 C 1.50701 * 109.47182 * 239.99906 * 2 1 3 5 5 H 1.07997 * 120.00392 * 240.00424 * 4 2 1 6 6 C 1.37883 * 119.99991 * 59.99933 * 4 2 1 7 7 N 1.31507 * 120.00155 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99746 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47144 * 269.99796 * 8 6 4 10 10 H 1.48500 * 109.46991 * 149.99986 * 8 6 4 11 11 H 1.48502 * 109.47517 * 30.00030 * 8 6 4 12 12 C 1.50693 * 109.47016 * 120.00160 * 2 1 3 13 13 O 1.21284 * 120.00119 * 97.96736 * 12 2 1 14 14 N 1.34779 * 119.99987 * 277.96408 * 12 2 1 15 15 C 1.46999 * 120.62216 * 3.87356 * 14 12 2 16 16 C 1.53806 * 107.66743 * 132.00969 * 15 14 12 17 17 C 1.52797 * 108.97979 * 68.72444 * 16 15 14 18 18 C 1.52828 * 110.50130 * 303.33324 * 17 16 15 19 19 H 1.08999 * 115.51140 * 236.44372 * 18 17 16 20 20 C 1.53536 * 116.22892 * 93.36311 * 18 17 16 21 21 C 1.46462 * 120.62214 * 184.14217 * 14 12 2 22 22 C 1.50699 * 115.35659 * 341.57824 * 21 14 12 23 23 O 1.20819 * 120.00223 * 138.49046 * 22 21 14 24 24 O 1.34230 * 119.99906 * 318.48985 * 22 21 14 25 25 H 1.08997 * 109.47571 * 306.70782 * 1 2 3 26 26 H 1.09006 * 109.47170 * 66.71568 * 1 2 3 27 27 H 1.09005 * 109.47355 * 186.70582 * 1 2 3 28 28 H 0.97002 * 120.00310 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.77581 * 251.67983 * 15 14 12 30 30 H 1.09008 * 109.77107 * 12.48151 * 15 14 12 31 31 H 1.09002 * 109.68673 * 308.81771 * 16 15 14 32 32 H 1.08996 * 109.50834 * 188.51950 * 16 15 14 33 33 H 1.09005 * 109.27036 * 183.07403 * 17 16 15 34 34 H 1.08998 * 109.24190 * 63.58308 * 17 16 15 35 35 H 1.08995 * 117.50838 * 142.42194 * 20 18 17 36 36 H 1.09001 * 117.50789 * 357.34185 * 20 18 17 37 37 H 0.96697 * 117.00194 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 2.1380 -0.8590 -3.5565 8 14 0.6258 1.2798 -2.6541 9 1 -0.8020 0.8745 -2.6993 10 1 0.9772 1.9953 -3.9071 11 1 0.8491 2.1774 -1.4923 12 6 2.0323 -0.7104 1.2304 13 8 2.3717 -1.8729 1.1634 14 7 2.1044 -0.0540 2.4053 15 6 1.6179 1.3283 2.5219 16 6 0.7282 1.4060 3.7740 17 6 1.6023 1.2380 5.0160 18 6 2.3794 -0.0763 4.9498 19 1 2.2309 -0.7523 5.7918 20 6 3.7914 -0.0004 4.3517 21 6 2.6743 -0.7025 3.5884 22 6 2.7529 -2.2061 3.5254 23 8 3.7351 -2.7775 3.9358 24 8 1.7316 -2.9106 3.0132 25 1 -0.3634 0.6142 0.8238 26 1 -0.3634 0.4063 -0.9440 27 1 -0.3634 -1.0207 0.1200 28 1 1.9040 -0.5274 -4.4376 29 1 2.4629 2.0093 2.6232 30 1 1.0362 1.5902 1.6380 31 1 -0.0184 0.6124 3.7438 32 1 0.2303 2.3750 3.8072 33 1 0.9698 1.2376 5.9037 34 1 2.3052 2.0690 5.0756 35 1 4.5631 -0.6247 4.8020 36 1 4.1278 0.9660 3.9761 37 1 1.8281 -3.8725 2.9934 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:40 Heat of formation + Delta-G solvation = -86.426522 kcal Electronic energy + Delta-G solvation = -21794.714475 eV Core-core repulsion = 18538.429966 eV Total energy + Delta-G solvation = -3256.284509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97073 -38.97919 -37.87381 -35.65131 -34.32026 -33.39906 -32.45073 -31.11077 -26.49787 -25.41569 -25.15978 -23.18602 -22.39938 -20.90272 -19.96720 -18.54506 -17.51551 -17.07892 -16.51143 -16.07561 -15.24778 -15.15252 -14.58778 -14.53679 -14.12302 -14.04906 -13.51163 -13.25924 -13.14293 -12.63788 -12.35623 -12.16435 -11.76806 -11.51798 -11.33705 -11.17746 -11.04869 -10.97789 -10.77174 -10.56419 -10.47161 -10.33430 -10.04952 -9.67165 -9.17024 -8.74145 -8.60990 -8.19984 -6.09231 -4.09914 2.31310 3.08408 3.19969 3.25931 3.26685 3.33175 3.38252 3.75928 4.33450 4.43698 4.59489 4.74283 4.80587 4.99154 5.19223 5.20314 5.39381 5.47386 5.57618 5.62955 5.69729 5.76404 5.83114 5.88547 5.98058 6.09100 6.15760 6.27806 6.42774 6.57459 6.78132 6.89543 7.10550 7.48126 7.85370 8.29337 8.47931 8.94268 9.06680 9.48474 11.03665 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.007311 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.298991 B = 3829.036049 C = 4560.331522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.005 3.995 3 H 0.047 0.953 4 C -0.505 4.505 5 H 0.089 0.911 6 C 0.071 3.929 7 N -0.894 5.894 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.533 3.467 13 O -0.506 6.506 14 N -0.591 5.591 15 C 0.105 3.895 16 C -0.137 4.137 17 C -0.088 4.088 18 C -0.134 4.134 19 H 0.114 0.886 20 C -0.155 4.155 21 C 0.110 3.890 22 C 0.539 3.461 23 O -0.527 6.527 24 O -0.484 6.484 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 6.860 17.372 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 H 0.065 0.935 4 C -0.544 4.544 5 H 0.107 0.893 6 C -0.131 4.131 7 N -0.532 5.532 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.324 3.676 13 O -0.379 6.379 14 N -0.327 5.327 15 C -0.017 4.017 16 C -0.175 4.175 17 C -0.125 4.125 18 C -0.153 4.153 19 H 0.132 0.868 20 C -0.194 4.194 21 C 0.021 3.979 22 C 0.382 3.618 23 O -0.417 6.417 24 O -0.293 6.293 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -3.271 6.456 17.175 18.638 hybrid contribution -0.502 0.193 -0.308 0.619 sum -3.773 6.648 16.867 18.519 Atomic orbital electron populations 1.22138 0.96841 1.01577 0.99641 1.19288 0.93456 0.97190 0.91768 0.93498 1.20864 1.32372 1.13909 0.87213 0.89276 1.24973 0.95801 0.96637 0.95682 1.69876 1.45278 1.40095 0.97901 0.86905 0.80734 0.83663 0.77213 1.20402 1.22220 1.19165 1.21482 0.76128 0.86964 0.83032 1.90562 1.47255 1.16927 1.83167 1.47771 1.63003 1.14550 1.07417 1.22030 0.97875 0.82212 0.99629 1.21974 0.98329 1.02955 0.94264 1.21075 0.98325 0.94519 0.98624 1.22815 0.98703 0.99636 0.94195 0.86776 1.23692 0.92060 1.02635 1.01020 1.19708 1.03827 0.86849 0.87519 1.21377 0.79981 0.88471 0.71953 1.90664 1.32558 1.71286 1.47173 1.84597 1.44587 1.25235 1.74870 0.94636 0.92937 0.92170 0.92476 0.91486 0.88099 0.90706 0.90234 0.90842 0.90846 0.86749 0.87168 0.73819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.44 37.16 0.31 -2.66 16 2 C 0.00 0.11 1.36 -92.93 -0.13 -0.02 16 3 H 0.05 1.03 6.05 -51.93 -0.31 0.72 16 4 C -0.51 -14.50 8.92 -34.44 -0.31 -14.81 16 5 H 0.09 2.93 7.21 -52.49 -0.38 2.55 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -27.44 13.96 55.43 0.77 -26.66 16 8 Si 0.88 20.91 24.42 -169.99 -4.15 16.76 16 9 H -0.28 -6.35 6.82 56.52 0.39 -5.97 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -5.74 6.53 56.52 0.37 -5.37 16 12 C 0.53 11.82 6.60 -10.99 -0.07 11.75 16 13 O -0.51 -12.86 11.68 -19.11 -0.22 -13.08 16 14 N -0.59 -10.25 3.07 -159.71 -0.49 -10.74 16 15 C 0.10 1.38 5.70 -3.35 -0.02 1.36 16 16 C -0.14 -1.38 6.01 -26.42 -0.16 -1.54 16 17 C -0.09 -0.78 5.86 -26.92 -0.16 -0.94 16 18 C -0.13 -1.53 5.93 -90.57 -0.54 -2.07 16 19 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.16 -1.99 9.32 -26.74 -0.25 -2.24 16 21 C 0.11 1.76 2.97 -133.42 -0.40 1.36 16 22 C 0.54 9.95 6.18 36.00 0.22 10.17 16 23 O -0.53 -10.51 16.91 -18.75 -0.32 -10.82 16 24 O -0.48 -8.61 10.73 -47.42 -0.51 -9.12 16 25 H 0.03 0.58 6.64 -51.93 -0.34 0.24 16 26 H 0.05 1.13 3.22 -51.93 -0.17 0.96 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.10 1.39 4.58 -51.92 -0.24 1.16 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.03 -51.93 -0.42 0.15 16 35 H 0.11 1.48 7.58 -51.93 -0.39 1.09 16 36 H 0.11 1.26 8.09 -51.93 -0.42 0.84 16 37 H 0.40 5.54 9.10 45.56 0.41 5.95 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -35.28 291.54 -6.08 -41.37 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.97 Total: 5.61 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.59 Total: 2.30 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.28 Total: -37.40 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.05 Total: -33.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.15 Total: 16.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.28 -6.08 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.058 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds