Wall clock time and date at job start Mon Mar 30 2020 00:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47182 * 2 1 4 4 C 1.50701 * 109.47182 * 239.99906 * 2 1 3 5 5 H 1.07997 * 120.00392 * 240.00424 * 4 2 1 6 6 C 1.37883 * 119.99991 * 59.99933 * 4 2 1 7 7 N 1.31507 * 120.00155 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99746 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47144 * 269.99796 * 8 6 4 10 10 H 1.48500 * 109.46991 * 149.99986 * 8 6 4 11 11 H 1.48502 * 109.47517 * 30.00030 * 8 6 4 12 12 C 1.50693 * 109.47016 * 120.00160 * 2 1 3 13 13 O 1.21284 * 120.00119 * 97.96736 * 12 2 1 14 14 N 1.34779 * 119.99987 * 277.96408 * 12 2 1 15 15 C 1.46999 * 120.62216 * 3.87356 * 14 12 2 16 16 C 1.53806 * 107.66743 * 132.00969 * 15 14 12 17 17 C 1.52797 * 108.97979 * 68.72444 * 16 15 14 18 18 C 1.52828 * 110.50130 * 303.33324 * 17 16 15 19 19 H 1.08999 * 115.51140 * 236.44372 * 18 17 16 20 20 C 1.53536 * 116.22892 * 93.36311 * 18 17 16 21 21 C 1.46462 * 120.62214 * 184.14217 * 14 12 2 22 22 C 1.50699 * 115.35659 * 341.57824 * 21 14 12 23 23 O 1.20819 * 120.00223 * 138.49046 * 22 21 14 24 24 O 1.34230 * 119.99906 * 318.48985 * 22 21 14 25 25 H 1.08997 * 109.47571 * 306.70782 * 1 2 3 26 26 H 1.09006 * 109.47170 * 66.71568 * 1 2 3 27 27 H 1.09005 * 109.47355 * 186.70582 * 1 2 3 28 28 H 0.97002 * 120.00310 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.77581 * 251.67983 * 15 14 12 30 30 H 1.09008 * 109.77107 * 12.48151 * 15 14 12 31 31 H 1.09002 * 109.68673 * 308.81771 * 16 15 14 32 32 H 1.08996 * 109.50834 * 188.51950 * 16 15 14 33 33 H 1.09005 * 109.27036 * 183.07403 * 17 16 15 34 34 H 1.08998 * 109.24190 * 63.58308 * 17 16 15 35 35 H 1.08995 * 117.50838 * 142.42194 * 20 18 17 36 36 H 1.09001 * 117.50789 * 357.34185 * 20 18 17 37 37 H 0.96697 * 117.00194 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 2.1380 -0.8590 -3.5565 8 14 0.6258 1.2798 -2.6541 9 1 -0.8020 0.8745 -2.6993 10 1 0.9772 1.9953 -3.9071 11 1 0.8491 2.1774 -1.4923 12 6 2.0323 -0.7104 1.2304 13 8 2.3717 -1.8729 1.1634 14 7 2.1044 -0.0540 2.4053 15 6 1.6179 1.3283 2.5219 16 6 0.7282 1.4060 3.7740 17 6 1.6023 1.2380 5.0160 18 6 2.3794 -0.0763 4.9498 19 1 2.2309 -0.7523 5.7918 20 6 3.7914 -0.0004 4.3517 21 6 2.6743 -0.7025 3.5884 22 6 2.7529 -2.2061 3.5254 23 8 3.7351 -2.7775 3.9358 24 8 1.7316 -2.9106 3.0132 25 1 -0.3634 0.6142 0.8238 26 1 -0.3634 0.4063 -0.9440 27 1 -0.3634 -1.0207 0.1200 28 1 1.9040 -0.5274 -4.4376 29 1 2.4629 2.0093 2.6232 30 1 1.0362 1.5902 1.6380 31 1 -0.0184 0.6124 3.7438 32 1 0.2303 2.3750 3.8072 33 1 0.9698 1.2376 5.9037 34 1 2.3052 2.0690 5.0756 35 1 4.5631 -0.6247 4.8020 36 1 4.1278 0.9660 3.9761 37 1 1.8281 -3.8725 2.9934 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:40 Heat of formation + Delta-G solvation = -112.844154 kcal Electronic energy + Delta-G solvation = -21795.860030 eV Core-core repulsion = 18538.429966 eV Total energy + Delta-G solvation = -3257.430064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.24782 -40.44235 -39.23842 -37.07900 -36.01063 -34.93305 -33.46639 -33.05658 -27.52369 -27.15855 -26.65375 -24.81675 -23.40407 -22.12821 -21.26993 -19.81016 -18.93030 -18.85389 -18.18234 -17.58765 -16.84844 -16.54641 -16.01028 -15.85796 -15.28693 -15.21902 -15.00408 -14.56880 -14.43740 -14.15003 -13.91300 -13.51980 -13.26814 -12.91016 -12.64142 -12.58934 -12.44045 -12.30657 -12.12341 -11.96911 -11.74196 -11.54876 -11.44991 -11.26774 -11.10222 -10.78081 -10.38313 -9.46916 -8.28688 -6.37432 0.97535 1.33745 1.40119 1.52180 1.73714 1.87990 2.03473 2.34141 2.64881 3.04899 3.36646 3.64919 3.88240 3.93023 3.97414 4.15434 4.25289 4.37793 4.43236 4.55960 4.63989 4.69675 4.74842 4.80162 4.87940 4.91524 5.10697 5.16297 5.21949 5.38650 5.41737 5.49802 5.52909 5.60091 6.19006 6.44838 6.74996 6.95155 7.22632 7.37817 8.89181 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.007311 C = 0.006138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.298991 B = 3829.036049 C = 4560.331522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.005 3.995 3 H 0.070 0.930 4 C -0.521 4.521 5 H 0.021 0.979 6 C 0.005 3.995 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.262 1.262 10 H -0.298 1.298 11 H -0.221 1.221 12 C 0.524 3.476 13 O -0.560 6.560 14 N -0.580 5.580 15 C 0.089 3.911 16 C -0.130 4.130 17 C -0.086 4.086 18 C -0.097 4.097 19 H 0.125 0.875 20 C -0.148 4.148 21 C 0.062 3.938 22 C 0.530 3.470 23 O -0.556 6.556 24 O -0.494 6.494 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 11.193 20.155 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.016 4.016 3 H 0.088 0.912 4 C -0.560 4.560 5 H 0.039 0.961 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.784 3.216 9 H -0.187 1.187 10 H -0.226 1.226 11 H -0.143 1.143 12 C 0.314 3.686 13 O -0.437 6.437 14 N -0.315 5.315 15 C -0.032 4.032 16 C -0.167 4.167 17 C -0.123 4.123 18 C -0.117 4.117 19 H 0.143 0.857 20 C -0.186 4.186 21 C -0.026 4.026 22 C 0.374 3.626 23 O -0.449 6.449 24 O -0.304 6.304 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.291 10.828 20.034 23.380 hybrid contribution 0.220 -1.281 -1.130 1.723 sum -5.071 9.547 18.904 21.776 Atomic orbital electron populations 1.22030 0.94430 1.01642 1.01410 1.19193 0.95290 0.97263 0.89891 0.91218 1.21018 1.31924 1.12512 0.90498 0.96099 1.26085 0.97418 1.00983 0.94617 1.70082 1.47550 1.42863 0.98794 0.85706 0.78548 0.78826 0.78565 1.18748 1.22604 1.14319 1.21322 0.76262 0.86522 0.84469 1.90540 1.49701 1.19092 1.84358 1.47598 1.61830 1.15827 1.06212 1.22494 0.99452 0.79817 1.01411 1.21974 0.97565 1.04466 0.92735 1.21221 0.98761 0.93153 0.99202 1.23084 0.97326 1.00355 0.90891 0.85697 1.23824 0.92456 1.02583 0.99759 1.20079 1.07954 0.85270 0.89274 1.22089 0.79464 0.89977 0.71043 1.90626 1.33337 1.72254 1.48654 1.84580 1.44769 1.26334 1.74718 0.89610 0.93285 0.93994 0.92335 0.89131 0.88428 0.92076 0.86602 0.88127 0.88457 0.87497 0.85243 0.72705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.44 71.98 0.61 -4.74 16 2 C 0.01 0.24 1.36 -12.29 -0.02 0.22 16 3 H 0.07 2.86 6.05 -2.39 -0.01 2.84 16 4 C -0.52 -31.33 8.92 25.60 0.23 -31.11 16 5 H 0.02 1.49 7.21 -2.91 -0.02 1.47 16 6 C 0.01 0.31 5.45 84.66 0.46 0.78 16 7 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 8 Si 0.96 42.10 24.42 68.60 1.68 43.78 16 9 H -0.26 -10.81 6.82 99.48 0.68 -10.13 16 10 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.22 -8.02 6.53 99.48 0.65 -7.37 16 12 C 0.52 23.51 6.60 87.65 0.58 24.09 16 13 O -0.56 -30.17 11.68 20.54 0.24 -29.93 16 14 N -0.58 -19.09 3.07 -777.60 -2.39 -21.48 16 15 C 0.09 1.92 5.70 86.56 0.49 2.42 16 16 C -0.13 -1.84 6.01 30.80 0.19 -1.66 16 17 C -0.09 -1.00 5.86 30.47 0.18 -0.82 16 18 C -0.10 -1.86 5.93 -10.76 -0.06 -1.92 16 19 H 0.13 2.14 8.14 -2.39 -0.02 2.13 16 20 C -0.15 -3.41 9.32 30.59 0.29 -3.13 16 21 C 0.06 1.91 2.97 2.58 0.01 1.92 16 22 C 0.53 20.09 6.18 71.24 0.44 20.53 16 23 O -0.56 -23.10 16.91 21.98 0.37 -22.72 16 24 O -0.49 -18.50 10.73 -43.61 -0.47 -18.97 16 25 H 0.09 2.45 6.64 -2.39 -0.02 2.43 16 26 H 0.05 1.93 3.22 -2.38 -0.01 1.92 16 27 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.09 1.58 8.07 -2.39 -0.02 1.56 16 30 H 0.10 2.18 4.58 -2.38 -0.01 2.16 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.10 0.78 8.03 -2.39 -0.02 0.76 16 35 H 0.11 2.64 7.58 -2.39 -0.02 2.62 16 36 H 0.13 2.45 8.09 -2.39 -0.02 2.43 16 37 H 0.41 12.44 9.10 -74.06 -0.67 11.76 16 Total: -1.00 -85.64 291.54 3.46 -82.18 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.35 Total: 21.67 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 3.38 Total: 6.58 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.09 Total: -82.58 kcal Atomic # 8 Polarization: -71.76 SS G_CDS: 0.14 Total: -71.62 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.68 Total: 43.78 kcal Total: -85.64 3.46 -82.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.668 kcal (2) G-P(sol) polarization free energy of solvation -85.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds