Wall clock time and date at job start Mon Mar 30 2020 00:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47107 * 2 1 4 4 C 1.50701 * 109.47078 * 119.99772 * 2 1 3 5 5 H 1.08001 * 119.99224 * 119.99738 * 4 2 1 6 6 C 1.37868 * 120.00164 * 299.99847 * 4 2 1 7 7 N 1.31517 * 120.00013 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00145 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47172 * 89.99603 * 8 6 4 10 10 H 1.48495 * 109.46625 * 329.99511 * 8 6 4 11 11 H 1.48500 * 109.46880 * 209.99739 * 8 6 4 12 12 C 1.50703 * 109.46961 * 239.99922 * 2 1 3 13 13 O 1.21270 * 120.00170 * 262.07303 * 12 2 1 14 14 N 1.34777 * 119.99783 * 82.07268 * 12 2 1 15 15 C 1.47003 * 120.62148 * 1.83036 * 14 12 2 16 16 C 1.53376 * 107.89638 * 132.08889 * 15 14 12 17 17 C 1.52797 * 109.10107 * 68.46694 * 16 15 14 18 18 C 1.52835 * 110.50398 * 303.44284 * 17 16 15 19 19 H 1.09005 * 115.50419 * 236.44912 * 18 17 16 20 20 C 1.53530 * 116.23049 * 93.36979 * 18 17 16 21 21 C 1.46457 * 120.62078 * 181.54832 * 14 12 2 22 22 C 1.50700 * 115.35199 * 341.56443 * 21 14 12 23 23 O 1.20832 * 119.99717 * 129.78599 * 22 21 14 24 24 O 1.34224 * 120.00312 * 309.78424 * 22 21 14 25 25 H 1.08998 * 109.47301 * 64.02798 * 1 2 3 26 26 H 1.09005 * 109.47357 * 184.02937 * 1 2 3 27 27 H 1.08995 * 109.47309 * 304.02659 * 1 2 3 28 28 H 0.97002 * 120.00223 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.77598 * 251.68667 * 15 14 12 30 30 H 1.08996 * 109.77752 * 12.44037 * 15 14 12 31 31 H 1.08993 * 109.53677 * 188.34918 * 16 15 14 32 32 H 1.09000 * 109.53290 * 308.58670 * 16 15 14 33 33 H 1.08997 * 109.27358 * 63.70372 * 17 16 15 34 34 H 1.08999 * 109.26975 * 183.21287 * 17 16 15 35 35 H 1.09001 * 117.50592 * 357.33968 * 20 18 17 36 36 H 1.08990 * 117.51609 * 142.42957 * 20 18 17 37 37 H 0.96702 * 117.00239 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.8471 2.1765 1.4921 11 1 0.9760 1.9951 3.9068 12 6 2.0323 -0.7104 -1.2305 13 8 2.3710 -1.8730 -1.1637 14 7 2.1051 -0.0538 -2.4052 15 6 1.7361 1.3665 -2.4932 16 6 2.8478 2.0958 -3.2580 17 6 2.8342 1.6389 -4.7160 18 6 2.9839 0.1204 -4.8026 19 1 3.8200 -0.2352 -5.4050 20 6 1.6800 -0.6875 -4.8660 21 6 2.5592 -0.7402 -3.6167 22 6 3.3214 -2.0196 -3.3861 23 8 3.0075 -3.0249 -3.9785 24 8 4.3489 -2.0425 -2.5228 25 1 -0.3634 0.4500 -0.9238 26 1 -0.3634 -1.0252 0.0722 27 1 -0.3634 0.5750 0.8517 28 1 1.9033 -0.5279 4.4376 29 1 0.7918 1.4698 -3.0277 30 1 1.6406 1.7855 -1.4915 31 1 2.6770 3.1712 -3.2116 32 1 3.8133 1.8592 -2.8110 33 1 1.8916 1.9342 -5.1768 34 1 3.6589 2.1122 -5.2489 35 1 0.7422 -0.1357 -4.8005 36 1 1.6639 -1.5682 -5.5079 37 1 4.8071 -2.8863 -2.4079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:42 Heat of formation + Delta-G solvation = -88.036041 kcal Electronic energy + Delta-G solvation = -21759.258566 eV Core-core repulsion = 18502.904263 eV Total energy + Delta-G solvation = -3256.354303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96275 -38.98660 -37.88299 -35.66963 -34.30899 -33.43635 -32.46138 -31.12642 -26.48947 -25.38265 -25.20216 -23.25014 -22.42903 -20.91446 -19.87890 -18.57337 -17.52874 -17.16140 -16.51320 -16.09637 -15.26653 -15.00553 -14.79597 -14.43455 -14.26035 -13.88024 -13.48274 -13.27980 -13.17875 -12.63474 -12.31360 -12.23789 -11.71309 -11.60869 -11.41866 -11.16092 -11.05094 -11.00399 -10.76432 -10.61909 -10.47266 -10.33199 -10.03135 -9.68594 -9.15650 -8.79449 -8.61735 -8.22883 -6.09493 -4.10003 2.33546 3.09309 3.20040 3.22759 3.25090 3.32911 3.34592 3.74838 4.33292 4.44603 4.57400 4.75549 4.80535 4.99212 5.19598 5.20942 5.39879 5.46078 5.55964 5.62365 5.70071 5.73627 5.85005 5.89299 5.96934 6.10102 6.16927 6.26885 6.39698 6.57696 6.74892 6.90094 7.09929 7.46918 7.82805 8.29050 8.47535 8.89929 9.06816 9.48306 11.03469 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.007310 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.967772 B = 3829.335870 C = 4522.405284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 H 0.050 0.950 4 C -0.505 4.505 5 H 0.090 0.910 6 C 0.072 3.928 7 N -0.894 5.894 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.267 1.267 11 H -0.294 1.294 12 C 0.535 3.465 13 O -0.512 6.512 14 N -0.589 5.589 15 C 0.105 3.895 16 C -0.139 4.139 17 C -0.088 4.088 18 C -0.135 4.135 19 H 0.114 0.886 20 C -0.156 4.156 21 C 0.111 3.889 22 C 0.540 3.460 23 O -0.525 6.525 24 O -0.491 6.491 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 8.152 -16.666 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 H 0.068 0.932 4 C -0.543 4.543 5 H 0.108 0.892 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.192 1.192 11 H -0.222 1.222 12 C 0.326 3.674 13 O -0.385 6.385 14 N -0.325 5.325 15 C -0.017 4.017 16 C -0.177 4.177 17 C -0.125 4.125 18 C -0.154 4.154 19 H 0.132 0.868 20 C -0.195 4.195 21 C 0.023 3.977 22 C 0.383 3.617 23 O -0.414 6.414 24 O -0.300 6.300 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 0.060 7.589 -16.558 18.215 hybrid contribution -0.364 0.249 0.348 0.562 sum -0.304 7.838 -16.210 18.008 Atomic orbital electron populations 1.22102 0.96820 1.02108 0.99175 1.19315 0.93398 0.97225 0.91774 0.93245 1.20862 1.32343 1.13925 0.87155 0.89169 1.24956 0.95750 0.96616 0.95689 1.69877 1.45315 1.40060 0.97895 0.86920 0.80856 0.83730 0.77109 1.20435 1.19245 1.22174 1.21495 0.75637 0.87133 0.83114 1.90544 1.47082 1.17574 1.83274 1.47801 1.67775 1.10921 1.06029 1.21959 0.97062 0.79906 1.02808 1.21907 1.00326 1.00181 0.95254 1.21073 1.02687 0.91562 0.97191 1.22805 0.99472 0.94716 0.98448 0.86781 1.23743 0.95103 1.02880 0.97776 1.19731 1.01357 0.92402 0.84234 1.21334 0.77551 0.88041 0.74777 1.90662 1.66823 1.34565 1.49364 1.84523 1.44224 1.42303 1.58982 0.94668 0.92010 0.93133 0.92477 0.91544 0.88024 0.90159 0.90527 0.90920 0.90810 0.87220 0.86911 0.73459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 16 2 C 0.00 0.10 1.41 -92.92 -0.13 -0.03 16 3 H 0.05 1.08 5.31 -51.93 -0.28 0.80 16 4 C -0.50 -14.43 8.92 -34.44 -0.31 -14.73 16 5 H 0.09 2.95 7.22 -52.49 -0.38 2.57 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.88 20.87 24.33 -169.99 -4.14 16.74 16 9 H -0.28 -6.40 6.91 56.52 0.39 -6.01 16 10 H -0.27 -5.73 6.53 56.52 0.37 -5.36 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.54 11.92 6.64 -10.98 -0.07 11.85 16 13 O -0.51 -13.15 12.23 -17.56 -0.21 -13.37 16 14 N -0.59 -10.25 3.07 -159.83 -0.49 -10.74 16 15 C 0.10 1.38 5.50 -3.57 -0.02 1.36 16 16 C -0.14 -1.45 5.99 -26.64 -0.16 -1.60 16 17 C -0.09 -0.79 5.86 -26.92 -0.16 -0.95 16 18 C -0.13 -1.55 5.91 -90.65 -0.54 -2.09 16 19 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.16 -1.96 9.35 -26.53 -0.25 -2.20 16 21 C 0.11 1.79 2.97 -133.29 -0.40 1.39 16 22 C 0.54 10.09 5.68 36.01 0.20 10.29 16 23 O -0.52 -10.62 17.04 -18.76 -0.32 -10.94 16 24 O -0.49 -8.88 11.64 -46.91 -0.55 -9.43 16 25 H 0.03 0.59 7.63 -51.93 -0.40 0.20 16 26 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.05 1.07 3.38 -51.93 -0.18 0.89 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.10 1.42 5.52 -51.93 -0.29 1.13 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.55 8.03 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.20 8.11 -51.93 -0.42 0.78 16 36 H 0.11 1.42 7.68 -51.93 -0.40 1.02 16 37 H 0.41 5.69 9.10 45.56 0.41 6.10 16 LS Contribution 294.15 15.07 4.43 4.43 Total: -1.00 -35.45 294.15 -6.15 -41.60 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.05 Total: 5.73 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.60 Total: 2.55 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.28 Total: -37.31 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.08 Total: -33.74 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.14 Total: 16.74 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -35.45 -6.15 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.439 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds