Wall clock time and date at job start Mon Mar 30 2020 00:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47107 * 2 1 4 4 C 1.50701 * 109.47078 * 119.99772 * 2 1 3 5 5 H 1.08001 * 119.99224 * 119.99738 * 4 2 1 6 6 C 1.37868 * 120.00164 * 299.99847 * 4 2 1 7 7 N 1.31517 * 120.00013 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00145 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47172 * 89.99603 * 8 6 4 10 10 H 1.48495 * 109.46625 * 329.99511 * 8 6 4 11 11 H 1.48500 * 109.46880 * 209.99739 * 8 6 4 12 12 C 1.50703 * 109.46961 * 239.99922 * 2 1 3 13 13 O 1.21270 * 120.00170 * 262.07303 * 12 2 1 14 14 N 1.34777 * 119.99783 * 82.07268 * 12 2 1 15 15 C 1.47003 * 120.62148 * 1.83036 * 14 12 2 16 16 C 1.53376 * 107.89638 * 132.08889 * 15 14 12 17 17 C 1.52797 * 109.10107 * 68.46694 * 16 15 14 18 18 C 1.52835 * 110.50398 * 303.44284 * 17 16 15 19 19 H 1.09005 * 115.50419 * 236.44912 * 18 17 16 20 20 C 1.53530 * 116.23049 * 93.36979 * 18 17 16 21 21 C 1.46457 * 120.62078 * 181.54832 * 14 12 2 22 22 C 1.50700 * 115.35199 * 341.56443 * 21 14 12 23 23 O 1.20832 * 119.99717 * 129.78599 * 22 21 14 24 24 O 1.34224 * 120.00312 * 309.78424 * 22 21 14 25 25 H 1.08998 * 109.47301 * 64.02798 * 1 2 3 26 26 H 1.09005 * 109.47357 * 184.02937 * 1 2 3 27 27 H 1.08995 * 109.47309 * 304.02659 * 1 2 3 28 28 H 0.97002 * 120.00223 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.77598 * 251.68667 * 15 14 12 30 30 H 1.08996 * 109.77752 * 12.44037 * 15 14 12 31 31 H 1.08993 * 109.53677 * 188.34918 * 16 15 14 32 32 H 1.09000 * 109.53290 * 308.58670 * 16 15 14 33 33 H 1.08997 * 109.27358 * 63.70372 * 17 16 15 34 34 H 1.08999 * 109.26975 * 183.21287 * 17 16 15 35 35 H 1.09001 * 117.50592 * 357.33968 * 20 18 17 36 36 H 1.08990 * 117.51609 * 142.42957 * 20 18 17 37 37 H 0.96702 * 117.00239 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.8471 2.1765 1.4921 11 1 0.9760 1.9951 3.9068 12 6 2.0323 -0.7104 -1.2305 13 8 2.3710 -1.8730 -1.1637 14 7 2.1051 -0.0538 -2.4052 15 6 1.7361 1.3665 -2.4932 16 6 2.8478 2.0958 -3.2580 17 6 2.8342 1.6389 -4.7160 18 6 2.9839 0.1204 -4.8026 19 1 3.8200 -0.2352 -5.4050 20 6 1.6800 -0.6875 -4.8660 21 6 2.5592 -0.7402 -3.6167 22 6 3.3214 -2.0196 -3.3861 23 8 3.0075 -3.0249 -3.9785 24 8 4.3489 -2.0425 -2.5228 25 1 -0.3634 0.4500 -0.9238 26 1 -0.3634 -1.0252 0.0722 27 1 -0.3634 0.5750 0.8517 28 1 1.9033 -0.5279 4.4376 29 1 0.7918 1.4698 -3.0277 30 1 1.6406 1.7855 -1.4915 31 1 2.6770 3.1712 -3.2116 32 1 3.8133 1.8592 -2.8110 33 1 1.8916 1.9342 -5.1768 34 1 3.6589 2.1122 -5.2489 35 1 0.7422 -0.1357 -4.8005 36 1 1.6639 -1.5682 -5.5079 37 1 4.8071 -2.8863 -2.4079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592212865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:41 Heat of formation + Delta-G solvation = -114.695944 kcal Electronic energy + Delta-G solvation = -21760.414627 eV Core-core repulsion = 18502.904263 eV Total energy + Delta-G solvation = -3257.510364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.24872 -40.46896 -39.25328 -37.12680 -36.00818 -34.95610 -33.50370 -33.06875 -27.48879 -27.19412 -26.64749 -24.90776 -23.43100 -22.14996 -21.17595 -19.85851 -19.02346 -18.86263 -18.21179 -17.59300 -16.84241 -16.45050 -16.13439 -15.95349 -15.38342 -15.03838 -14.91472 -14.69332 -14.41634 -14.18173 -13.89568 -13.60002 -13.26903 -12.93095 -12.72333 -12.53504 -12.47624 -12.36876 -12.18674 -11.99886 -11.74663 -11.58015 -11.46381 -11.20997 -11.10388 -10.77126 -10.44683 -9.49262 -8.28402 -6.36807 0.97851 1.33396 1.39618 1.51450 1.67455 1.89785 2.01121 2.34052 2.63398 3.05076 3.37463 3.63864 3.87577 3.90401 3.97509 4.13912 4.25151 4.33933 4.42763 4.56664 4.62888 4.67918 4.74991 4.79061 4.87170 4.92304 5.10314 5.14653 5.22058 5.37527 5.40658 5.47871 5.52587 5.58655 6.18257 6.43429 6.75237 6.91931 7.21790 7.34327 8.89517 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.007310 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.967772 B = 3829.335870 C = 4522.405284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.004 3.996 3 H 0.074 0.926 4 C -0.520 4.520 5 H 0.022 0.978 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.220 1.220 11 H -0.297 1.297 12 C 0.526 3.474 13 O -0.567 6.567 14 N -0.578 5.578 15 C 0.089 3.911 16 C -0.134 4.134 17 C -0.084 4.084 18 C -0.104 4.104 19 H 0.123 0.877 20 C -0.140 4.140 21 C 0.061 3.939 22 C 0.531 3.469 23 O -0.554 6.554 24 O -0.504 6.504 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.268 0.732 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.107 0.893 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 12.578 -19.545 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 H 0.092 0.908 4 C -0.558 4.558 5 H 0.041 0.959 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.143 1.143 11 H -0.225 1.225 12 C 0.316 3.684 13 O -0.445 6.445 14 N -0.312 5.312 15 C -0.031 4.031 16 C -0.171 4.171 17 C -0.122 4.122 18 C -0.123 4.123 19 H 0.141 0.859 20 C -0.178 4.178 21 C -0.026 4.026 22 C 0.375 3.625 23 O -0.446 6.446 24 O -0.315 6.315 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.153 0.847 36 H 0.126 0.874 37 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -1.870 12.063 -19.512 23.015 hybrid contribution 0.365 -1.243 1.200 1.766 sum -1.504 10.820 -18.311 21.322 Atomic orbital electron populations 1.21996 0.94498 1.01339 1.01767 1.19229 0.95152 0.97439 0.89885 0.90812 1.21009 1.31859 1.12535 0.90410 0.95935 1.26056 0.97378 1.00942 0.94639 1.70082 1.47592 1.42812 0.98773 0.85739 0.78566 0.78990 0.78555 1.18949 1.14287 1.22478 1.21345 0.75785 0.86600 0.84623 1.90521 1.49703 1.19834 1.84477 1.47634 1.66152 1.12430 1.04981 1.22431 0.99813 0.77206 1.03632 1.21911 0.97938 1.01867 0.95426 1.21202 1.05331 0.88993 0.96625 1.23075 0.99067 0.96300 0.93880 0.85868 1.23896 0.96557 1.03171 0.94211 1.20119 1.04582 0.92935 0.85011 1.22113 0.77263 0.89176 0.73912 1.90620 1.67560 1.35889 1.50500 1.84515 1.44577 1.43258 1.59167 0.89828 0.94327 0.92819 0.92348 0.88027 0.88676 0.86654 0.92928 0.88003 0.88441 0.84724 0.87446 0.72393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.56 71.98 0.62 -4.81 16 2 C 0.00 0.20 1.41 -12.29 -0.02 0.18 16 3 H 0.07 3.01 5.31 -2.39 -0.01 3.00 16 4 C -0.52 -31.20 8.92 25.60 0.23 -30.97 16 5 H 0.02 1.60 7.22 -2.91 -0.02 1.58 16 6 C 0.01 0.37 5.45 84.65 0.46 0.83 16 7 N -0.95 -61.26 13.96 21.44 0.30 -60.96 16 8 Si 0.96 42.02 24.33 68.60 1.67 43.69 16 9 H -0.26 -10.97 6.91 99.48 0.69 -10.29 16 10 H -0.22 -7.97 6.53 99.48 0.65 -7.32 16 11 H -0.30 -13.12 7.11 99.48 0.71 -12.42 16 12 C 0.53 23.72 6.64 87.66 0.58 24.31 16 13 O -0.57 -31.02 12.23 19.11 0.23 -30.78 16 14 N -0.58 -19.02 3.07 -777.97 -2.39 -21.42 16 15 C 0.09 1.93 5.50 86.41 0.48 2.40 16 16 C -0.13 -2.09 5.99 30.65 0.18 -1.91 16 17 C -0.08 -1.01 5.86 30.47 0.18 -0.83 16 18 C -0.10 -1.99 5.91 -10.82 -0.06 -2.05 16 19 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 20 C -0.14 -3.03 9.35 30.73 0.29 -2.74 16 21 C 0.06 1.88 2.97 2.67 0.01 1.89 16 22 C 0.53 20.44 5.68 71.24 0.40 20.85 16 23 O -0.55 -23.33 17.04 21.95 0.37 -22.95 16 24 O -0.50 -19.51 11.64 -44.03 -0.51 -20.03 16 25 H 0.08 2.44 7.63 -2.39 -0.02 2.42 16 26 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.05 2.05 3.38 -2.39 -0.01 2.05 16 28 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.10 1.54 8.10 -2.39 -0.02 1.52 16 30 H 0.10 2.18 5.52 -2.39 -0.01 2.17 16 31 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 0.75 8.03 -2.39 -0.02 0.73 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 2.22 8.11 -2.39 -0.02 2.20 16 36 H 0.11 2.46 7.68 -2.39 -0.02 2.45 16 37 H 0.42 13.01 9.10 -74.06 -0.67 12.33 16 Total: -1.00 -86.40 294.15 3.37 -83.03 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.35 Total: 22.27 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 3.34 Total: 7.15 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.09 Total: -82.38 kcal Atomic # 8 Polarization: -73.86 SS G_CDS: 0.10 Total: -73.76 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.69 kcal Total: -86.40 3.37 -83.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.662 kcal (2) G-P(sol) polarization free energy of solvation -86.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds