Wall clock time and date at job start Mon Mar 30 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46480 * 2 1 4 4 C 1.50695 * 109.46915 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99518 * 114.37604 * 4 2 1 6 6 C 1.37878 * 120.00439 * 294.37065 * 4 2 1 7 7 N 1.31507 * 120.00312 * 157.15203 * 6 4 2 8 8 Si 1.86801 * 119.99463 * 337.15149 * 6 4 2 9 9 H 1.48510 * 109.46809 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47606 * 299.99845 * 8 6 4 11 11 H 1.48502 * 109.47343 * 60.00150 * 8 6 4 12 12 N 1.46501 * 109.47192 * 239.99963 * 2 1 3 13 13 C 1.46497 * 119.99845 * 299.99851 * 12 2 1 14 14 C 1.34781 * 119.99796 * 119.99654 * 12 2 1 15 15 O 1.21277 * 119.99763 * 0.02562 * 14 12 2 16 16 C 1.50695 * 119.99576 * 179.97438 * 14 12 2 17 17 C 1.54889 * 129.09341 * 299.94282 * 16 14 12 18 18 C 1.57172 * 77.91772 * 180.16702 * 17 16 14 19 19 C 1.50703 * 129.25062 * 179.19581 * 18 17 16 20 20 O 1.20821 * 120.00011 * 241.28131 * 19 18 17 21 21 O 1.34228 * 119.99650 * 61.28496 * 19 18 17 22 22 C 1.54409 * 83.73325 * 42.47405 * 18 17 16 23 23 C 1.54895 * 83.77103 * 317.35446 * 18 17 16 24 24 H 1.09001 * 109.47164 * 173.29069 * 1 2 3 25 25 H 1.08994 * 109.47265 * 293.29041 * 1 2 3 26 26 H 1.09002 * 109.47128 * 53.29792 * 1 2 3 27 27 H 0.96999 * 120.00037 * 354.92872 * 7 6 4 28 28 H 1.09005 * 109.47196 * 90.00309 * 13 12 2 29 29 H 1.09001 * 109.46912 * 209.99651 * 13 12 2 30 30 H 1.08993 * 109.47341 * 329.99860 * 13 12 2 31 31 H 1.09010 * 114.97485 * 291.95862 * 17 16 14 32 32 H 1.09000 * 114.97970 * 67.13253 * 17 16 14 33 33 H 0.96706 * 116.99874 * 179.97438 * 21 19 18 34 34 H 1.09001 * 114.93536 * 205.06523 * 22 18 17 35 35 H 1.09003 * 114.93506 * 70.03518 * 22 18 17 36 36 H 1.08998 * 116.12065 * 290.12371 * 23 18 17 37 37 H 1.09000 * 113.83365 * 154.96055 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8129 -0.9519 3.5407 8 14 1.4577 1.6521 2.6639 9 1 1.2389 1.9726 4.0974 10 1 2.6187 2.4254 2.1550 11 1 0.2446 2.0110 1.8862 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0355 -2.0834 15 8 3.0864 1.1254 -1.8912 16 6 3.2960 -0.7461 -3.3135 17 6 4.1896 -2.0070 -3.4163 18 6 3.9437 -1.6539 -4.9280 19 6 4.4573 -2.3455 -6.1645 20 8 5.1631 -1.7478 -6.9420 21 8 4.1306 -3.6255 -6.4022 22 6 4.1857 -0.2046 -4.4535 23 6 2.4885 -1.4063 -4.4587 24 1 -0.3633 -1.0206 -0.1201 25 1 -0.3633 0.4063 0.9439 26 1 -0.3633 0.6142 -0.8239 27 1 1.9161 -1.9110 3.4386 28 1 0.7376 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5296 -2.5968 -0.4708 31 1 5.2173 -1.8716 -3.0788 32 1 3.7274 -2.9289 -3.0633 33 1 4.4835 -4.0263 -7.2084 34 1 3.7228 0.5647 -5.0717 35 1 5.2133 0.0198 -4.1674 36 1 1.9201 -2.2906 -4.1706 37 1 1.9340 -0.7123 -5.0903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592221749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:19 Heat of formation + Delta-G solvation = -18.783616 kcal Electronic energy + Delta-G solvation = -20762.415475 eV Core-core repulsion = 17509.064182 eV Total energy + Delta-G solvation = -3253.351293 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.47895 -40.01229 -38.57035 -36.38518 -35.53401 -32.84923 -30.35064 -27.09023 -26.48965 -26.06536 -25.77652 -24.85474 -23.52680 -20.71285 -19.28683 -18.22446 -18.13423 -17.50989 -16.93439 -15.99097 -15.89524 -14.93872 -14.79563 -14.53589 -14.46551 -13.79130 -13.43546 -12.88123 -12.63697 -12.61585 -12.06698 -11.96063 -11.86799 -11.63330 -11.58085 -11.49480 -11.36455 -11.22869 -10.94088 -10.54085 -10.49468 -10.40799 -10.11111 -9.80569 -9.23865 -9.14866 -8.34032 -7.84145 -6.54028 -4.16744 1.75580 2.58314 2.90260 3.38780 3.48313 3.57931 3.67057 3.81894 4.04377 4.09505 4.30924 4.45645 4.50558 4.84712 5.10299 5.17530 5.29850 5.34431 5.43642 5.64757 5.68909 5.74866 5.79645 5.87525 5.90818 6.14594 6.24530 6.32676 6.40547 6.56379 6.90721 7.11414 7.38015 7.61183 7.80389 8.23332 8.29657 8.69526 8.88081 9.48489 10.81341 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.038514 B = 0.004618 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.829022 B = 6061.369074 C = 6285.674269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.235 3.765 3 H 0.055 0.945 4 C -0.618 4.618 5 H 0.063 0.937 6 C 0.044 3.956 7 N -0.893 5.893 8 Si 1.030 2.970 9 H -0.283 1.283 10 H -0.278 1.278 11 H -0.275 1.275 12 N -0.577 5.577 13 C 0.077 3.923 14 C 0.564 3.436 15 O -0.543 6.543 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.157 4.157 19 C 0.548 3.452 20 O -0.506 6.506 21 O -0.508 6.508 22 C -0.062 4.062 23 C -0.076 4.076 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.270 0.730 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.413 0.587 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 -5.797 -17.080 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.656 4.656 5 H 0.081 0.919 6 C -0.163 4.163 7 N -0.525 5.525 8 Si 0.858 3.142 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.066 4.066 14 C 0.350 3.650 15 O -0.421 6.421 16 C -0.149 4.149 17 C -0.116 4.116 18 C -0.158 4.158 19 C 0.390 3.610 20 O -0.394 6.394 21 O -0.320 6.320 22 C -0.099 4.099 23 C -0.114 4.114 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.272 0.728 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.693 -3.664 -15.650 16.088 hybrid contribution 0.551 -1.734 -1.741 2.518 sum 1.244 -5.398 -17.391 18.252 Atomic orbital electron populations 1.22424 0.98513 1.00209 1.00212 1.19227 0.90473 0.94714 0.82199 0.92713 1.22084 1.41464 1.11201 0.90841 0.91920 1.25615 0.93175 1.05699 0.91793 1.70866 1.43498 1.06402 1.31749 0.84233 0.77717 0.76067 0.76218 1.20893 1.20443 1.20152 1.47867 1.48476 1.11784 1.22572 1.21827 0.99163 0.82926 1.02694 1.18362 0.79024 0.85882 0.81774 1.90668 1.58386 1.16764 1.76261 1.23826 0.98513 0.97622 0.94897 1.24633 1.00561 0.97185 0.89243 1.23726 1.00933 0.99156 0.92006 1.21079 0.76300 0.79253 0.84407 1.90737 1.35322 1.66263 1.47054 1.84514 1.71680 1.27429 1.48372 1.23656 1.00514 0.92255 0.93501 1.24081 0.92484 1.00531 0.94295 0.93446 0.91872 0.95515 0.92053 0.93664 0.92064 0.89901 0.89347 0.88664 0.72808 0.89514 0.89417 0.88876 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.02 37.16 0.34 -2.96 16 2 C 0.24 5.58 2.23 -69.08 -0.15 5.43 16 3 H 0.06 1.43 5.48 -51.93 -0.28 1.14 16 4 C -0.62 -16.59 8.30 -34.44 -0.29 -16.88 16 5 H 0.06 1.78 7.38 -52.48 -0.39 1.39 16 6 C 0.04 1.24 5.20 -17.82 -0.09 1.14 16 7 N -0.89 -26.28 13.70 55.43 0.76 -25.52 16 8 Si 1.03 24.95 26.43 -169.99 -4.49 20.46 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.17 6.12 56.52 0.35 -5.82 16 12 N -0.58 -11.63 2.75 -175.27 -0.48 -12.11 16 13 C 0.08 1.22 8.50 59.85 0.51 1.73 16 14 C 0.56 11.13 7.78 -10.99 -0.09 11.05 16 15 O -0.54 -12.83 16.42 5.56 0.09 -12.74 16 16 C -0.15 -2.09 2.44 -172.25 -0.42 -2.51 16 17 C -0.08 -0.93 7.27 -24.71 -0.18 -1.11 16 18 C -0.16 -1.77 3.61 -170.99 -0.62 -2.39 16 19 C 0.55 6.03 8.44 36.01 0.30 6.33 16 20 O -0.51 -6.98 17.85 -18.75 -0.33 -7.31 16 21 O -0.51 -4.05 13.42 -39.25 -0.53 -4.57 16 22 C -0.06 -0.80 7.78 -26.70 -0.21 -1.01 16 23 C -0.08 -0.85 7.41 -25.97 -0.19 -1.04 16 24 H 0.05 0.93 7.45 -51.93 -0.39 0.55 16 25 H 0.06 1.40 5.44 -51.93 -0.28 1.12 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.80 4.06 -51.93 -0.21 0.59 16 30 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16 31 H 0.09 1.03 7.91 -51.92 -0.41 0.61 16 32 H 0.10 0.99 6.15 -51.93 -0.32 0.67 16 33 H 0.41 1.36 9.10 45.56 0.41 1.77 16 34 H 0.09 1.08 7.94 -51.93 -0.41 0.67 16 35 H 0.09 1.13 7.91 -51.93 -0.41 0.72 16 36 H 0.09 0.89 7.29 -51.93 -0.38 0.52 16 37 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 304.87 15.07 4.59 4.59 Total: -1.00 -33.56 304.87 -5.37 -38.93 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.89 Total: 0.49 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.09 Total: -2.21 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.28 Total: -37.63 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.77 Total: -24.63 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.49 Total: 20.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.56 -5.37 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.147 kcal (2) G-P(sol) polarization free energy of solvation -33.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds