Wall clock time and date at job start Mon Mar 30 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46480 * 2 1 4 4 C 1.50695 * 109.46915 * 119.99712 * 2 1 3 5 5 H 1.08003 * 119.99518 * 114.37604 * 4 2 1 6 6 C 1.37878 * 120.00439 * 294.37065 * 4 2 1 7 7 N 1.31507 * 120.00312 * 157.15203 * 6 4 2 8 8 Si 1.86801 * 119.99463 * 337.15149 * 6 4 2 9 9 H 1.48510 * 109.46809 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47606 * 299.99845 * 8 6 4 11 11 H 1.48502 * 109.47343 * 60.00150 * 8 6 4 12 12 N 1.46501 * 109.47192 * 239.99963 * 2 1 3 13 13 C 1.46497 * 119.99845 * 299.99851 * 12 2 1 14 14 C 1.34781 * 119.99796 * 119.99654 * 12 2 1 15 15 O 1.21277 * 119.99763 * 0.02562 * 14 12 2 16 16 C 1.50695 * 119.99576 * 179.97438 * 14 12 2 17 17 C 1.54889 * 129.09341 * 299.94282 * 16 14 12 18 18 C 1.57172 * 77.91772 * 180.16702 * 17 16 14 19 19 C 1.50703 * 129.25062 * 179.19581 * 18 17 16 20 20 O 1.20821 * 120.00011 * 241.28131 * 19 18 17 21 21 O 1.34228 * 119.99650 * 61.28496 * 19 18 17 22 22 C 1.54409 * 83.73325 * 42.47405 * 18 17 16 23 23 C 1.54895 * 83.77103 * 317.35446 * 18 17 16 24 24 H 1.09001 * 109.47164 * 173.29069 * 1 2 3 25 25 H 1.08994 * 109.47265 * 293.29041 * 1 2 3 26 26 H 1.09002 * 109.47128 * 53.29792 * 1 2 3 27 27 H 0.96999 * 120.00037 * 354.92872 * 7 6 4 28 28 H 1.09005 * 109.47196 * 90.00309 * 13 12 2 29 29 H 1.09001 * 109.46912 * 209.99651 * 13 12 2 30 30 H 1.08993 * 109.47341 * 329.99860 * 13 12 2 31 31 H 1.09010 * 114.97485 * 291.95862 * 17 16 14 32 32 H 1.09000 * 114.97970 * 67.13253 * 17 16 14 33 33 H 0.96706 * 116.99874 * 179.97438 * 21 19 18 34 34 H 1.09001 * 114.93536 * 205.06523 * 22 18 17 35 35 H 1.09003 * 114.93506 * 70.03518 * 22 18 17 36 36 H 1.08998 * 116.12065 * 290.12371 * 23 18 17 37 37 H 1.09000 * 113.83365 * 154.96055 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5762 -1.6384 1.1340 6 6 1.7976 -0.1755 2.4794 7 7 1.8129 -0.9519 3.5407 8 14 1.4577 1.6521 2.6639 9 1 1.2389 1.9726 4.0974 10 1 2.6187 2.4254 2.1550 11 1 0.2446 2.0110 1.8862 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0355 -2.0834 15 8 3.0864 1.1254 -1.8912 16 6 3.2960 -0.7461 -3.3135 17 6 4.1896 -2.0070 -3.4163 18 6 3.9437 -1.6539 -4.9280 19 6 4.4573 -2.3455 -6.1645 20 8 5.1631 -1.7478 -6.9420 21 8 4.1306 -3.6255 -6.4022 22 6 4.1857 -0.2046 -4.4535 23 6 2.4885 -1.4063 -4.4587 24 1 -0.3633 -1.0206 -0.1201 25 1 -0.3633 0.4063 0.9439 26 1 -0.3633 0.6142 -0.8239 27 1 1.9161 -1.9110 3.4386 28 1 0.7376 -2.1444 -1.9993 29 1 2.4629 -2.5818 -1.9863 30 1 1.5296 -2.5968 -0.4708 31 1 5.2173 -1.8716 -3.0788 32 1 3.7274 -2.9289 -3.0633 33 1 4.4835 -4.0263 -7.2084 34 1 3.7228 0.5647 -5.0717 35 1 5.2133 0.0198 -4.1674 36 1 1.9201 -2.2906 -4.1706 37 1 1.9340 -0.7123 -5.0903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592221749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:19 Heat of formation + Delta-G solvation = -42.644280 kcal Electronic energy + Delta-G solvation = -20763.450151 eV Core-core repulsion = 17509.064182 eV Total energy + Delta-G solvation = -3254.385969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.47557 -40.91222 -40.06586 -37.24774 -37.15305 -34.83576 -32.15744 -28.17405 -27.78038 -26.97117 -26.82634 -26.78347 -24.83406 -22.14019 -20.52196 -19.57981 -19.39962 -18.95335 -18.12416 -17.54422 -16.73791 -16.32521 -16.21540 -15.60765 -15.52861 -15.32010 -14.89814 -14.66367 -14.15628 -13.92514 -13.59342 -13.39261 -13.22416 -13.02459 -12.77269 -12.66327 -12.46954 -12.42747 -12.27096 -11.99307 -11.87004 -11.70251 -11.46047 -11.38869 -11.21859 -10.72333 -10.45225 -9.53271 -8.71379 -6.36551 0.91415 1.44050 1.49398 1.51279 1.69979 1.78063 2.24198 2.43752 2.87069 2.98580 3.06739 3.14295 3.30273 3.43757 3.66270 4.18716 4.36160 4.47225 4.49693 4.53558 4.63325 4.66395 4.72783 4.76230 4.77937 4.80454 4.83545 4.92074 5.03191 5.14527 5.38717 5.50511 5.68522 5.82562 6.05891 6.57143 6.67514 6.95127 7.22495 7.37525 8.60462 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.038514 B = 0.004618 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.829022 B = 6061.369074 C = 6285.674269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.233 3.767 3 H 0.030 0.970 4 C -0.612 4.612 5 H 0.037 0.963 6 C 0.001 3.999 7 N -0.923 5.923 8 Si 1.063 2.937 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.245 1.245 12 N -0.586 5.586 13 C 0.075 3.925 14 C 0.558 3.442 15 O -0.594 6.594 16 C -0.172 4.172 17 C -0.070 4.070 18 C -0.140 4.140 19 C 0.559 3.441 20 O -0.539 6.539 21 O -0.496 6.496 22 C -0.071 4.071 23 C -0.057 4.057 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.260 0.740 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.435 0.565 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -6.954 -19.375 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.130 3.870 3 H 0.047 0.953 4 C -0.650 4.650 5 H 0.055 0.945 6 C -0.200 4.200 7 N -0.557 5.557 8 Si 0.885 3.115 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.169 1.169 12 N -0.315 5.315 13 C -0.067 4.067 14 C 0.346 3.654 15 O -0.476 6.476 16 C -0.175 4.175 17 C -0.108 4.108 18 C -0.142 4.142 19 C 0.402 3.598 20 O -0.429 6.429 21 O -0.310 6.310 22 C -0.109 4.109 23 C -0.094 4.094 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.134 0.866 33 H 0.298 0.702 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.136 0.864 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.334 -4.891 -17.984 18.641 hybrid contribution 0.938 -1.458 -1.076 2.040 sum 0.604 -6.349 -19.060 20.099 Atomic orbital electron populations 1.22256 0.96211 1.01520 1.00490 1.18977 0.92136 0.93300 0.82604 0.95259 1.22230 1.40292 1.10093 0.92391 0.94468 1.26658 0.93045 1.08419 0.91899 1.70957 1.46212 1.05986 1.32593 0.83803 0.78702 0.72305 0.76644 1.20686 1.20989 1.16943 1.47903 1.48590 1.13376 1.21593 1.22044 1.01831 0.80394 1.02405 1.19117 0.77875 0.85523 0.82870 1.90628 1.60015 1.19218 1.77729 1.23607 1.01049 0.99072 0.93759 1.24666 1.00061 0.96459 0.89583 1.23428 1.01120 0.97616 0.91992 1.20818 0.75500 0.79884 0.83613 1.90745 1.36842 1.67246 1.48066 1.84453 1.71177 1.25636 1.49773 1.23742 0.99925 0.93922 0.93263 1.24090 0.92283 1.01061 0.91982 0.92050 0.92957 0.93405 0.93122 0.90492 0.89107 0.92146 0.89638 0.86558 0.70177 0.89417 0.90215 0.86355 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 9.02 71.98 0.65 -5.32 16 2 C 0.23 10.99 2.23 44.24 0.10 11.09 16 3 H 0.03 1.55 5.48 -2.39 -0.01 1.53 16 4 C -0.61 -33.36 8.30 25.60 0.21 -33.15 16 5 H 0.04 2.17 7.38 -2.91 -0.02 2.15 16 6 C 0.00 0.08 5.20 84.66 0.44 0.52 16 7 N -0.92 -55.47 13.70 21.45 0.29 -55.17 16 8 Si 1.06 50.67 26.43 68.60 1.81 52.48 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.25 -10.43 6.12 99.48 0.61 -9.82 16 12 N -0.59 -23.01 2.75 -826.81 -2.28 -25.29 16 13 C 0.08 2.19 8.50 127.77 1.09 3.28 16 14 C 0.56 21.72 7.78 87.65 0.68 22.41 16 15 O -0.59 -28.66 16.42 -3.02 -0.05 -28.71 16 16 C -0.17 -4.61 2.44 -63.67 -0.16 -4.77 16 17 C -0.07 -1.46 7.27 31.90 0.23 -1.23 16 18 C -0.14 -2.74 3.61 -62.86 -0.23 -2.97 16 19 C 0.56 10.51 8.44 71.24 0.60 11.11 16 20 O -0.54 -13.68 17.85 21.98 0.39 -13.29 16 21 O -0.50 -5.81 13.42 -51.39 -0.69 -6.50 16 22 C -0.07 -1.75 7.78 30.61 0.24 -1.51 16 23 C -0.06 -1.04 7.41 31.08 0.23 -0.81 16 24 H 0.06 2.29 7.45 -2.39 -0.02 2.27 16 25 H 0.05 2.22 5.44 -2.39 -0.01 2.21 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.26 15.57 8.73 -92.71 -0.81 14.76 16 28 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.09 2.06 4.06 -2.39 -0.01 2.05 16 30 H 0.06 2.05 6.92 -2.39 -0.02 2.03 16 31 H 0.09 1.83 7.91 -2.38 -0.02 1.81 16 32 H 0.12 1.91 6.15 -2.39 -0.01 1.89 16 33 H 0.44 1.08 9.10 -74.05 -0.67 0.41 16 34 H 0.09 2.11 7.94 -2.39 -0.02 2.09 16 35 H 0.08 2.05 7.91 -2.39 -0.02 2.03 16 36 H 0.12 1.61 7.29 -2.39 -0.02 1.59 16 37 H 0.09 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -75.12 304.87 3.87 -71.24 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 0.30 Total: 6.58 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.09 Total: -1.35 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -1.98 Total: -80.46 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.35 Total: -48.49 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 1.81 Total: 52.48 kcal Total: -75.12 3.87 -71.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592221749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.597 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds