Wall clock time and date at job start Mon Mar 30 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47446 * 59.99708 * 9 7 5 11 11 H 1.48503 * 109.47009 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47104 * 299.99470 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.46905 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47194 * 180.02562 * 15 14 13 17 17 C 1.35171 * 125.60388 * 90.00092 * 16 15 14 18 18 C 1.40320 * 107.12121 * 179.97438 * 17 16 15 19 19 C 1.36643 * 106.70152 * 0.02562 * 18 17 16 20 20 C 1.46473 * 125.99196 * 180.02562 * 19 18 17 21 21 O 1.21621 * 119.99722 * 359.97438 * 20 19 18 22 22 O 1.34896 * 119.99595 * 180.02562 * 20 19 18 23 23 O 1.33910 * 125.60748 * 269.69486 * 16 15 14 24 24 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 28 28 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 29 29 H 0.96997 * 120.00335 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 31 31 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 32 32 H 1.00898 * 110.99915 * 56.05185 * 14 13 2 33 33 H 1.09002 * 109.47091 * 300.00139 * 15 14 13 34 34 H 1.09001 * 109.46854 * 60.00166 * 15 14 13 35 35 H 1.07998 * 126.44126 * 359.97438 * 17 16 15 36 36 H 1.07998 * 126.64546 * 180.02562 * 18 17 16 37 37 H 0.96706 * 116.99503 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4989 0.5629 -5.2496 10 1 2.0920 1.9229 -5.1870 11 1 1.9938 -0.1372 -6.4621 12 1 0.0190 0.6705 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7086 0.1786 4.8709 17 6 0.5521 0.0300 5.5547 18 6 0.5640 0.9709 6.5957 19 6 1.7421 1.6554 6.4929 20 6 2.1884 2.7378 7.3731 21 8 1.4842 3.1006 8.2958 22 8 3.3801 3.3328 7.1595 23 8 2.4252 1.1548 5.4423 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7994 -1.2055 28 1 1.6054 -1.7197 -1.2952 29 1 2.9228 -1.8422 -4.7317 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2056 32 1 0.6528 0.1792 2.4753 33 1 1.6920 -1.6246 3.7301 34 1 3.2126 -0.7037 3.6401 35 1 -0.2334 -0.6794 5.3403 36 1 -0.2084 1.1243 7.3348 37 1 3.6318 4.0420 7.7669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592470346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:26 Heat of formation + Delta-G solvation = -90.034330 kcal Electronic energy + Delta-G solvation = -19247.154616 eV Core-core repulsion = 15990.713660 eV Total energy + Delta-G solvation = -3256.440956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.01248 -40.22605 -37.20962 -36.52520 -34.40893 -33.34353 -32.19838 -30.47322 -27.36087 -26.59147 -24.88204 -23.45694 -22.27589 -21.76883 -20.78057 -19.11639 -18.77135 -17.89394 -16.86969 -16.66258 -16.03383 -15.56408 -14.97546 -14.69414 -14.16812 -14.04397 -13.97032 -13.54835 -13.40397 -13.27178 -12.53639 -12.38336 -11.99690 -11.84367 -11.82373 -11.42243 -11.31678 -10.90247 -10.77897 -10.38940 -10.35927 -10.28943 -9.77534 -9.25333 -9.04513 -8.94200 -8.36947 -8.33856 -5.99464 -4.00796 0.51649 1.91409 2.11465 2.57844 2.90605 3.33748 3.38223 3.40776 4.18883 4.45492 4.52975 4.54922 4.81113 5.04563 5.20816 5.25465 5.36446 5.51284 5.56484 5.65918 5.69638 5.96503 5.98584 6.01236 6.15648 6.37312 6.48478 6.61979 6.80309 7.05525 7.10599 7.17307 7.42995 7.46100 7.66535 7.81733 8.00230 8.43755 9.05215 9.62795 11.12032 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.036542 B = 0.002840 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.048027 B = 9855.157860 C =10075.459416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.686 5.686 15 C 0.125 3.875 16 C 0.059 3.941 17 C -0.226 4.226 18 C -0.097 4.097 19 C -0.078 4.078 20 C 0.575 3.425 21 O -0.500 6.500 22 O -0.503 6.503 23 O -0.139 6.139 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.344 0.656 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 3.169 21.400 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.553 4.553 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.004 4.004 16 C 0.004 3.996 17 C -0.246 4.246 18 C -0.116 4.116 19 C -0.129 4.129 20 C 0.420 3.580 21 O -0.390 6.390 22 O -0.314 6.314 23 O -0.033 6.033 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -1.395 3.370 21.117 21.430 hybrid contribution -0.842 0.147 -0.400 0.944 sum -2.237 3.517 20.717 21.132 Atomic orbital electron populations 1.21755 0.96584 1.00515 1.00399 1.21243 0.94959 1.00246 0.93929 0.91465 1.19105 0.96192 0.95359 0.90235 1.21195 1.34816 1.08319 0.90976 0.92591 1.25013 0.95293 0.95080 0.99107 1.69947 1.38967 1.21215 1.23542 0.86683 0.78857 0.80169 0.82445 1.20248 1.21369 1.20303 1.22213 1.00799 0.94509 0.88829 1.60594 1.20275 1.50561 1.00516 1.20543 1.02700 0.92682 0.84441 1.23017 0.91167 0.89486 0.95891 1.21669 0.99839 1.04603 0.98478 1.21967 0.96105 0.94314 0.99236 1.20559 0.95335 1.02303 0.94679 1.18849 0.78935 0.79237 0.81019 1.90999 1.55504 1.62491 1.30031 1.84700 1.36320 1.51484 1.58902 1.84147 1.42783 1.41037 1.35344 0.94976 0.91729 0.93909 0.96576 0.96677 0.93007 0.95228 0.90947 0.83668 0.91282 0.88593 0.82129 0.81816 0.72243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.77 37.16 0.33 -2.07 16 2 C -0.08 -1.66 2.55 -90.62 -0.23 -1.89 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.18 8.41 -34.44 -0.29 -14.47 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 1.02 5.14 -3.82 -0.02 1.00 16 14 N -0.69 -9.29 6.49 -115.05 -0.75 -10.04 16 15 C 0.13 1.36 6.21 -4.97 -0.03 1.33 16 16 C 0.06 0.66 6.82 -35.40 -0.24 0.42 16 17 C -0.23 -2.18 10.77 -39.89 -0.43 -2.61 16 18 C -0.10 -0.98 10.62 -39.38 -0.42 -1.40 16 19 C -0.08 -0.92 7.18 -36.84 -0.26 -1.19 16 20 C 0.57 6.35 8.30 34.05 0.28 6.63 16 21 O -0.50 -6.29 17.65 -19.36 -0.34 -6.63 16 22 O -0.50 -4.38 13.44 -42.47 -0.57 -4.95 16 23 O -0.14 -1.79 10.67 4.74 0.05 -1.74 16 24 H 0.03 0.47 6.68 -51.93 -0.35 0.13 16 25 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.34 4.39 6.98 -39.29 -0.27 4.11 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.42 1.37 9.11 45.56 0.42 1.78 16 LS Contribution 323.42 15.07 4.87 4.87 Total: -1.00 -32.56 323.42 -6.86 -39.41 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.30 Total: 0.69 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -1.54 Total: -12.18 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.01 Total: -35.95 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.86 Total: -13.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.56 -6.86 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.621 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds