Wall clock time and date at job start Mon Mar 30 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47446 * 59.99708 * 9 7 5 11 11 H 1.48503 * 109.47009 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47104 * 299.99470 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.46905 * 110.99800 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47194 * 180.02562 * 15 14 13 17 17 C 1.35171 * 125.60388 * 90.00092 * 16 15 14 18 18 C 1.40320 * 107.12121 * 179.97438 * 17 16 15 19 19 C 1.36643 * 106.70152 * 0.02562 * 18 17 16 20 20 C 1.46473 * 125.99196 * 180.02562 * 19 18 17 21 21 O 1.21621 * 119.99722 * 359.97438 * 20 19 18 22 22 O 1.34896 * 119.99595 * 180.02562 * 20 19 18 23 23 O 1.33910 * 125.60748 * 269.69486 * 16 15 14 24 24 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 25 25 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 26 26 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 28 28 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 29 29 H 0.96997 * 120.00335 * 180.02562 * 8 7 5 30 30 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 31 31 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 32 32 H 1.00898 * 110.99915 * 56.05185 * 14 13 2 33 33 H 1.09002 * 109.47091 * 300.00139 * 15 14 13 34 34 H 1.09001 * 109.46854 * 60.00166 * 15 14 13 35 35 H 1.07998 * 126.44126 * 359.97438 * 17 16 15 36 36 H 1.07998 * 126.64546 * 180.02562 * 18 17 16 37 37 H 0.96706 * 116.99503 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4989 0.5629 -5.2496 10 1 2.0920 1.9229 -5.1870 11 1 1.9938 -0.1372 -6.4621 12 1 0.0190 0.6705 -5.3090 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7086 0.1786 4.8709 17 6 0.5521 0.0300 5.5547 18 6 0.5640 0.9709 6.5957 19 6 1.7421 1.6554 6.4929 20 6 2.1884 2.7378 7.3731 21 8 1.4842 3.1006 8.2958 22 8 3.3801 3.3328 7.1595 23 8 2.4252 1.1548 5.4423 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7994 -1.2055 28 1 1.6054 -1.7197 -1.2952 29 1 2.9228 -1.8422 -4.7317 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2056 32 1 0.6528 0.1792 2.4753 33 1 1.6920 -1.6246 3.7301 34 1 3.2126 -0.7037 3.6401 35 1 -0.2334 -0.6794 5.3403 36 1 -0.2084 1.1243 7.3348 37 1 3.6318 4.0420 7.7669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592470346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:26 Heat of formation + Delta-G solvation = -112.773417 kcal Electronic energy + Delta-G solvation = -19248.140657 eV Core-core repulsion = 15990.713660 eV Total energy + Delta-G solvation = -3257.426997 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.83082 -41.02820 -38.51960 -37.29653 -35.89756 -34.32396 -33.91333 -31.52756 -28.99287 -27.86552 -26.28992 -24.51072 -23.76295 -22.62613 -21.59285 -20.66507 -19.57125 -18.72752 -18.51384 -17.71742 -17.30315 -16.62120 -16.37130 -15.99792 -15.48912 -15.04566 -14.99711 -14.69477 -14.25038 -14.20768 -14.02633 -13.93253 -13.35351 -13.21958 -12.78272 -12.76969 -12.71667 -12.56240 -12.20416 -12.17529 -11.92862 -11.47732 -11.15369 -11.05028 -10.96812 -10.50824 -9.83737 -9.39844 -8.15892 -6.24425 -0.31125 1.12945 1.35793 1.41576 1.43789 1.51390 1.77415 2.18270 2.43523 3.17818 3.24048 3.62440 3.81688 4.05475 4.21375 4.24007 4.36587 4.40437 4.49774 4.53367 4.75455 4.80170 4.84378 4.88687 5.06865 5.25564 5.27080 5.33819 5.40274 5.52526 5.57250 5.81120 5.83821 5.91470 5.98097 6.33079 6.41519 6.80692 6.91700 7.43705 8.95826 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.036542 B = 0.002840 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.048027 B = 9855.157860 C =10075.459416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 H 0.053 0.947 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.078 3.922 14 N -0.693 5.693 15 C 0.128 3.872 16 C 0.043 3.957 17 C -0.213 4.213 18 C -0.093 4.093 19 C -0.102 4.102 20 C 0.579 3.421 21 O -0.522 6.522 22 O -0.503 6.503 23 O -0.161 6.161 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.046 0.954 27 H -0.012 1.012 28 H -0.006 1.006 29 H 0.262 0.738 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.350 0.650 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.189 0.811 36 H 0.182 0.818 37 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 3.548 22.218 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.005 4.005 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.050 4.050 14 N -0.327 5.327 15 C 0.000 4.000 16 C -0.011 4.011 17 C -0.232 4.232 18 C -0.112 4.112 19 C -0.152 4.152 20 C 0.424 3.576 21 O -0.414 6.414 22 O -0.318 6.318 23 O -0.057 6.057 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.006 0.994 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.171 0.829 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.206 0.794 36 H 0.199 0.801 37 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -2.665 3.773 21.958 22.438 hybrid contribution -0.403 0.038 -0.599 0.723 sum -3.069 3.811 21.359 21.912 Atomic orbital electron populations 1.21662 0.94869 1.00958 1.01014 1.21032 0.96332 0.98955 0.93353 0.92884 1.18998 0.94324 0.94700 0.92438 1.21635 1.34455 1.08568 0.92199 0.92252 1.25910 0.95315 0.96075 1.02536 1.70078 1.40259 1.22889 1.24313 0.85607 0.78952 0.78770 0.78371 1.19494 1.21066 1.19184 1.21872 1.00165 0.94613 0.88357 1.60438 1.20837 1.50829 1.00637 1.20579 1.02780 0.93581 0.83094 1.23161 0.91834 0.89707 0.96374 1.22006 0.99597 1.04262 0.97341 1.22310 0.95817 0.93684 0.99425 1.20897 0.96158 1.03147 0.95034 1.18816 0.79140 0.79055 0.80540 1.90983 1.56234 1.63280 1.30895 1.84664 1.35286 1.52205 1.59636 1.84115 1.43734 1.41820 1.35992 0.91530 0.93895 0.93519 0.99392 0.98730 0.92951 0.94224 0.91835 0.82936 0.88602 0.88835 0.79373 0.80055 0.69745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.35 8.77 71.98 0.63 -3.72 16 2 C -0.08 -3.02 2.55 -10.79 -0.03 -3.05 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -29.58 8.41 25.60 0.22 -29.37 16 6 H 0.06 3.19 7.06 -2.91 -0.02 3.17 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 9 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 13 C 0.08 2.40 5.14 86.31 0.44 2.85 16 14 N -0.69 -17.38 6.49 -517.91 -3.36 -20.74 16 15 C 0.13 2.50 6.21 85.56 0.53 3.03 16 16 C 0.04 0.87 6.82 24.98 0.17 1.04 16 17 C -0.21 -3.49 10.77 22.07 0.24 -3.25 16 18 C -0.09 -1.68 10.62 22.40 0.24 -1.45 16 19 C -0.10 -2.30 7.18 24.04 0.17 -2.13 16 20 C 0.58 12.33 8.30 69.97 0.58 12.91 16 21 O -0.52 -12.72 17.65 19.44 0.34 -12.38 16 22 O -0.50 -8.33 13.44 -56.72 -0.76 -9.09 16 23 O -0.16 -4.00 10.67 -4.90 -0.05 -4.05 16 24 H 0.07 1.80 6.68 -2.39 -0.02 1.78 16 25 H 0.04 1.63 6.95 -2.39 -0.02 1.61 16 26 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 27 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.35 7.92 6.98 -89.70 -0.63 7.29 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 36 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.44 2.37 9.11 -74.05 -0.67 1.69 16 Total: -1.00 -70.67 323.42 2.06 -68.61 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -0.21 Total: 8.59 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 3.79 Total: -20.90 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -3.08 Total: -76.96 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.47 Total: -25.52 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.67 2.06 -68.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.164 kcal (2) G-P(sol) polarization free energy of solvation -70.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds