Wall clock time and date at job start Mon Mar 30 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99855 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99716 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47438 * 89.99972 * 9 7 5 11 11 H 1.48502 * 109.46801 * 209.99792 * 9 7 5 12 12 H 1.48503 * 109.47368 * 329.99562 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.46897 * 111.00138 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.35167 * 125.60985 * 90.00347 * 16 15 14 18 18 C 1.40311 * 107.12788 * 180.02562 * 17 16 15 19 19 C 1.36637 * 106.70373 * 359.97438 * 18 17 16 20 20 C 1.46468 * 125.99849 * 180.02562 * 19 18 17 21 21 O 1.21624 * 119.99680 * 359.97438 * 20 19 18 22 22 O 1.34891 * 120.00149 * 180.02562 * 20 19 18 23 23 O 1.33912 * 125.61027 * 269.69978 * 16 15 14 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 29 29 H 0.97002 * 119.99949 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 31 31 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 32 32 H 1.00906 * 110.99658 * 56.04875 * 14 13 2 33 33 H 1.08996 * 109.47257 * 300.00577 * 15 14 13 34 34 H 1.09004 * 109.46984 * 60.00897 * 15 14 13 35 35 H 1.08001 * 126.43441 * 359.97438 * 17 16 15 36 36 H 1.08001 * 126.64783 * 180.02562 * 18 17 16 37 37 H 0.96703 * 116.99759 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6449 0.2773 4.7994 9 14 2.9626 -1.9889 3.9028 10 1 4.4161 -1.6855 3.8792 11 1 2.6144 -2.6430 5.1897 12 1 2.6287 -2.8996 2.7784 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7098 0.1791 -4.8708 17 6 2.4315 1.1680 -5.4436 18 6 1.6838 1.6499 -6.5287 19 6 0.5286 0.9210 -6.5643 20 6 -0.5576 1.0760 -7.5346 21 8 -0.4755 1.9162 -8.4101 22 8 -1.6493 0.2876 -7.4565 23 8 0.5668 0.0292 -5.5523 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7199 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.8921 -0.0456 5.6800 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7198 -1.2952 32 1 1.9882 0.9872 -2.3967 33 1 3.2127 -0.7038 -3.6400 34 1 1.6920 -1.6247 -3.7300 35 1 3.4011 1.5215 -5.1253 36 1 1.9669 2.4428 -7.2052 37 1 -2.3396 0.4268 -8.1192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592470351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:28 Heat of formation + Delta-G solvation = -86.571653 kcal Electronic energy + Delta-G solvation = -19295.733598 eV Core-core repulsion = 16039.442795 eV Total energy + Delta-G solvation = -3256.290803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.04633 -40.25020 -37.24293 -36.54892 -34.51903 -33.37592 -32.19569 -30.60809 -27.77826 -26.75069 -24.74941 -23.42140 -22.08699 -21.78910 -20.82364 -19.26999 -18.79435 -17.91530 -16.92570 -16.82317 -16.12297 -15.61909 -15.11889 -14.65592 -14.17490 -14.06778 -13.84482 -13.66836 -13.46652 -13.30865 -12.87794 -12.30471 -12.02331 -11.97568 -11.77050 -11.71364 -11.35109 -10.97391 -10.76206 -10.43800 -10.39983 -9.96185 -9.69581 -9.53966 -9.09917 -8.99985 -8.53364 -8.42386 -6.03471 -4.00756 0.48635 1.88036 2.08240 2.55277 2.87416 3.29446 3.37539 3.40409 4.12950 4.44713 4.45066 4.51724 4.77207 4.99190 5.14560 5.22045 5.29896 5.44864 5.50711 5.54043 5.63171 5.93986 5.94734 5.98147 6.21277 6.33394 6.52826 6.58545 6.77704 6.95484 7.03103 7.14312 7.23697 7.35124 7.43445 7.45815 7.80518 8.55545 9.02309 9.59104 11.09986 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041758 B = 0.002926 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.369294 B = 9565.716048 C = 9773.695688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.514 4.514 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.682 5.682 15 C 0.126 3.874 16 C 0.057 3.943 17 C -0.225 4.225 18 C -0.097 4.097 19 C -0.077 4.077 20 C 0.575 3.425 21 O -0.499 6.499 22 O -0.503 6.503 23 O -0.139 6.139 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.017 0.983 28 H 0.008 0.992 29 H 0.262 0.738 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.345 0.655 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -1.036 -23.987 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.002 4.002 16 C 0.003 3.997 17 C -0.244 4.244 18 C -0.116 4.116 19 C -0.128 4.128 20 C 0.419 3.581 21 O -0.390 6.390 22 O -0.314 6.314 23 O -0.033 6.033 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -0.486 -1.388 -23.707 23.753 hybrid contribution 1.149 -0.377 -0.166 1.221 sum 0.664 -1.765 -23.874 23.948 Atomic orbital electron populations 1.21613 0.95130 1.00776 1.00814 1.21020 0.96508 0.99084 0.92663 0.92064 1.19616 0.95382 0.96284 0.93391 1.21124 1.35417 1.09558 0.89077 0.90806 1.25034 0.95716 0.96904 0.95957 1.69913 1.47163 1.39282 0.98033 0.86801 0.80545 0.84510 0.77527 1.20445 1.21471 1.19052 1.22249 0.97477 0.97909 0.89020 1.60527 1.64188 1.06202 1.00559 1.20523 0.98253 0.97070 0.84403 1.22975 0.83932 0.97977 0.94817 1.21669 1.03385 1.00440 0.98953 1.21971 0.91654 0.99503 0.98497 1.20557 0.97969 0.99117 0.95131 1.18847 0.80131 0.77870 0.81221 1.91003 1.79400 1.34452 1.34103 1.84694 1.29676 1.59230 1.57834 1.84142 1.36904 1.47995 1.34306 0.93679 0.92131 0.94101 0.96520 0.97326 0.92802 0.95204 0.91038 0.83674 0.91295 0.88679 0.82111 0.81800 0.72222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.89 37.16 0.33 -2.02 16 2 C -0.07 -1.38 2.48 -90.62 -0.22 -1.60 16 3 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 6 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 9 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.06 0.90 5.07 -3.82 -0.02 0.88 16 14 N -0.68 -8.54 5.95 -115.06 -0.68 -9.23 16 15 C 0.13 1.26 6.21 -4.98 -0.03 1.23 16 16 C 0.06 0.61 6.82 -35.40 -0.24 0.37 16 17 C -0.22 -2.07 10.77 -39.90 -0.43 -2.50 16 18 C -0.10 -0.95 10.62 -39.38 -0.42 -1.37 16 19 C -0.08 -0.88 7.18 -36.85 -0.26 -1.15 16 20 C 0.57 6.18 8.30 34.05 0.28 6.46 16 21 O -0.50 -6.18 17.65 -19.36 -0.34 -6.52 16 22 O -0.50 -4.23 13.44 -42.46 -0.57 -4.80 16 23 O -0.14 -1.72 10.67 4.73 0.05 -1.67 16 24 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 25 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.34 4.08 8.72 -39.29 -0.34 3.74 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.42 1.26 9.11 45.56 0.42 1.68 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -33.19 322.08 -6.50 -39.69 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.39 Total: 0.68 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.52 Total: -12.82 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.09 Total: -36.18 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.86 Total: -12.99 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.19 -6.50 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.886 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds