Wall clock time and date at job start Mon Mar 30 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99855 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99716 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47438 * 89.99972 * 9 7 5 11 11 H 1.48502 * 109.46801 * 209.99792 * 9 7 5 12 12 H 1.48503 * 109.47368 * 329.99562 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46905 * 109.47028 * 64.99820 * 13 2 1 15 15 C 1.46897 * 111.00138 * 179.97438 * 14 13 2 16 16 C 1.50699 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.35167 * 125.60985 * 90.00347 * 16 15 14 18 18 C 1.40311 * 107.12788 * 180.02562 * 17 16 15 19 19 C 1.36637 * 106.70373 * 359.97438 * 18 17 16 20 20 C 1.46468 * 125.99849 * 180.02562 * 19 18 17 21 21 O 1.21624 * 119.99680 * 359.97438 * 20 19 18 22 22 O 1.34891 * 120.00149 * 180.02562 * 20 19 18 23 23 O 1.33912 * 125.61027 * 269.69978 * 16 15 14 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 28 28 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 29 29 H 0.97002 * 119.99949 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 31 31 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 32 32 H 1.00906 * 110.99658 * 56.04875 * 14 13 2 33 33 H 1.08996 * 109.47257 * 300.00577 * 15 14 13 34 34 H 1.09004 * 109.46984 * 60.00897 * 15 14 13 35 35 H 1.08001 * 126.43441 * 359.97438 * 17 16 15 36 36 H 1.08001 * 126.64783 * 180.02562 * 18 17 16 37 37 H 0.96703 * 116.99759 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 1.6449 0.2773 4.7994 9 14 2.9626 -1.9889 3.9028 10 1 4.4161 -1.6855 3.8792 11 1 2.6144 -2.6430 5.1897 12 1 2.6287 -2.8996 2.7784 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1258 -0.6266 -3.6671 16 6 1.7098 0.1791 -4.8708 17 6 2.4315 1.1680 -5.4436 18 6 1.6838 1.6499 -6.5287 19 6 0.5286 0.9210 -6.5643 20 6 -0.5576 1.0760 -7.5346 21 8 -0.4755 1.9162 -8.4101 22 8 -1.6493 0.2876 -7.4565 23 8 0.5668 0.0292 -5.5523 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6054 -1.7199 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 1.8921 -0.0456 5.6800 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7198 -1.2952 32 1 1.9882 0.9872 -2.3967 33 1 3.2127 -0.7038 -3.6400 34 1 1.6920 -1.6247 -3.7300 35 1 3.4011 1.5215 -5.1253 36 1 1.9669 2.4428 -7.2052 37 1 -2.3396 0.4268 -8.1192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592470351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:28 Heat of formation + Delta-G solvation = -110.500760 kcal Electronic energy + Delta-G solvation = -19296.771242 eV Core-core repulsion = 16039.442795 eV Total energy + Delta-G solvation = -3257.328447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.82179 -41.02695 -38.46152 -37.29535 -35.91094 -34.32713 -33.97210 -31.61837 -29.45334 -27.88965 -26.04341 -24.35522 -23.57600 -22.61777 -21.60796 -20.76277 -19.56296 -18.93142 -18.67967 -17.71153 -17.08295 -16.55575 -16.27116 -16.11808 -15.48135 -15.14834 -14.87462 -14.74169 -14.58170 -14.21580 -14.02630 -13.93746 -13.53381 -13.08991 -12.82009 -12.77300 -12.74549 -12.36950 -12.17756 -12.09339 -11.77966 -11.43090 -11.23558 -11.12861 -11.03347 -10.71053 -9.82193 -9.35085 -8.23702 -6.26235 -0.30622 1.13650 1.36289 1.38250 1.40838 1.52248 1.77626 2.18930 2.40238 3.11935 3.25081 3.63520 3.81921 4.05642 4.15160 4.27510 4.37720 4.43565 4.51381 4.51836 4.77102 4.85026 4.88663 4.93272 4.97454 5.13162 5.26460 5.34013 5.42258 5.42437 5.57214 5.72798 5.75608 5.84456 5.98562 6.36400 6.41635 6.80603 6.82305 7.37437 8.93282 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.041758 B = 0.002926 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.369294 B = 9565.716048 C = 9773.695688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 H 0.052 0.948 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.032 0.968 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.950 3.050 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.243 1.243 13 C 0.076 3.924 14 N -0.693 5.693 15 C 0.130 3.870 16 C 0.044 3.956 17 C -0.215 4.215 18 C -0.095 4.095 19 C -0.102 4.102 20 C 0.579 3.421 21 O -0.523 6.523 22 O -0.503 6.503 23 O -0.160 6.160 24 H 0.061 0.939 25 H 0.024 0.976 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.349 0.651 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.188 0.812 36 H 0.180 0.820 37 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 -2.517 -25.724 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.045 4.045 5 C -0.557 4.557 6 H 0.050 0.950 7 C -0.198 4.198 8 N -0.598 5.598 9 Si 0.774 3.226 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.167 1.167 13 C -0.052 4.052 14 N -0.326 5.326 15 C 0.002 3.998 16 C -0.009 4.009 17 C -0.234 4.234 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.424 3.576 21 O -0.415 6.415 22 O -0.317 6.317 23 O -0.055 6.055 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.205 0.795 36 H 0.197 0.803 37 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 1.040 -2.874 -25.483 25.666 hybrid contribution 0.581 0.176 0.349 0.700 sum 1.620 -2.698 -25.135 25.331 Atomic orbital electron populations 1.21518 0.95524 1.00657 0.99842 1.20896 0.96125 0.98714 0.93261 0.92961 1.19575 0.96007 0.95889 0.93018 1.21490 1.34224 1.08608 0.91396 0.94954 1.26045 0.97160 1.01040 0.95520 1.70084 1.49279 1.41711 0.98749 0.85661 0.79139 0.79820 0.78016 1.19178 1.21584 1.16658 1.21938 0.98111 0.97411 0.87764 1.60393 1.64942 1.06461 1.00768 1.20578 0.99761 0.96640 0.82811 1.23216 0.83825 0.98688 0.95187 1.21999 1.04022 0.99370 0.98043 1.22302 0.91119 0.99318 0.98680 1.20859 0.98953 0.99801 0.95613 1.18828 0.80424 0.77581 0.80753 1.90986 1.79998 1.35499 1.35023 1.84657 1.29791 1.58553 1.58747 1.84112 1.37894 1.48641 1.34882 0.91981 0.95664 0.93732 0.96240 0.96182 0.92759 0.93732 0.90605 0.83242 0.88584 0.88475 0.79519 0.80284 0.69756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -2.56 2.48 -10.79 -0.03 -2.59 16 3 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 4 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 5 C -0.52 -29.35 8.96 25.60 0.23 -29.12 16 6 H 0.03 2.03 7.30 -2.91 -0.02 2.01 16 7 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 8 N -0.96 -60.29 13.96 21.45 0.30 -59.99 16 9 Si 0.95 43.62 27.47 68.60 1.88 45.50 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 13 C 0.08 1.99 5.07 86.30 0.44 2.43 16 14 N -0.69 -15.39 5.95 -517.94 -3.08 -18.47 16 15 C 0.13 2.18 6.21 85.56 0.53 2.71 16 16 C 0.04 0.84 6.82 24.98 0.17 1.01 16 17 C -0.21 -3.37 10.77 22.07 0.24 -3.13 16 18 C -0.09 -1.68 10.62 22.40 0.24 -1.45 16 19 C -0.10 -2.23 7.18 24.04 0.17 -2.05 16 20 C 0.58 12.04 8.30 69.97 0.58 12.62 16 21 O -0.52 -12.64 17.65 19.43 0.34 -12.29 16 22 O -0.50 -7.98 13.44 -56.68 -0.76 -8.75 16 23 O -0.16 -3.75 10.67 -4.93 -0.05 -3.80 16 24 H 0.06 2.06 7.75 -2.39 -0.02 2.04 16 25 H 0.02 1.07 6.95 -2.39 -0.02 1.06 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.02 0.85 7.20 -2.39 -0.02 0.84 16 28 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 29 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.35 7.33 8.72 -89.69 -0.78 6.54 16 33 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 37 H 0.44 2.14 9.11 -74.06 -0.67 1.46 16 Total: -1.00 -73.01 322.08 1.99 -71.01 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -0.42 Total: 9.93 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.78 Total: -23.15 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.78 Total: -78.46 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.47 Total: -24.84 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.50 kcal Total: -73.01 1.99 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.488 kcal (2) G-P(sol) polarization free energy of solvation -73.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds