Wall clock time and date at job start Mon Mar 30 2020 00:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.63172 * 2 1 4 4 C 1.53005 * 109.79122 * 239.51298 * 2 1 3 5 5 C 1.50100 * 110.08101 * 190.23596 * 4 2 1 6 6 C 1.31697 * 123.76910 * 17.62457 * 5 4 2 7 7 C 1.46949 * 118.11511 * 179.34798 * 6 5 4 8 8 O 1.21661 * 119.99936 * 252.84619 * 7 6 5 9 9 N 1.34781 * 119.99914 * 72.84340 * 7 6 5 10 10 C 1.36818 * 119.99713 * 184.08243 * 9 7 6 11 11 H 1.07998 * 119.99827 * 20.92522 * 10 9 7 12 12 C 1.39072 * 120.00013 * 200.64415 * 10 9 7 13 13 N 1.31356 * 120.00046 * 9.95894 * 12 10 9 14 14 Si 1.86796 * 120.00054 * 189.96588 * 12 10 9 15 15 H 1.48494 * 109.47437 * 59.99937 * 14 12 10 16 16 H 1.48502 * 109.47181 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47059 * 299.99599 * 14 12 10 18 18 C 1.46495 * 119.99968 * 4.08662 * 9 7 6 19 19 C 1.50701 * 109.47285 * 83.46492 * 18 9 7 20 20 O 1.20830 * 120.00036 * 359.97438 * 19 18 9 21 21 O 1.34230 * 120.00548 * 179.97438 * 19 18 9 22 22 C 1.50099 * 123.76952 * 359.06297 * 6 5 4 23 23 C 1.53007 * 110.13157 * 17.43116 * 22 6 5 24 24 H 1.08994 * 109.47306 * 299.60827 * 1 2 3 25 25 H 1.09002 * 109.46939 * 59.60518 * 1 2 3 26 26 H 1.09002 * 109.47359 * 179.60399 * 1 2 3 27 27 H 1.09005 * 109.36204 * 310.63085 * 4 2 1 28 28 H 1.09000 * 109.36317 * 70.36164 * 4 2 1 29 29 H 1.07999 * 118.12326 * 197.39024 * 5 4 2 30 30 H 0.96992 * 120.00284 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47055 * 203.46042 * 18 9 7 32 32 H 1.08998 * 109.47527 * 323.46577 * 18 9 7 33 33 H 0.96700 * 117.00394 * 179.97438 * 21 19 18 34 34 H 1.09000 * 109.36034 * 137.63292 * 22 6 5 35 35 H 1.09000 * 109.36116 * 257.36617 * 22 6 5 36 36 H 1.09004 * 109.62911 * 69.94079 * 23 22 6 37 37 H 1.09006 * 109.63087 * 190.51989 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0480 -0.7304 -1.2406 5 6 3.5279 -0.9540 -1.1266 6 6 4.1941 -0.8808 0.0070 7 6 5.6408 -1.1370 -0.0221 8 8 6.0843 -2.1733 0.4356 9 7 6.4763 -0.2241 -0.5560 10 6 7.8129 -0.4977 -0.6592 11 1 8.1574 -1.5211 -0.6415 12 6 8.7272 0.5416 -0.7928 13 7 8.3376 1.7848 -0.6247 14 14 10.5092 0.1698 -1.2115 15 1 10.5744 -0.5352 -2.5167 16 1 11.2733 1.4404 -1.2960 17 1 11.0970 -0.6911 -0.1538 18 6 5.9533 1.0612 -1.0256 19 6 5.8374 2.0118 0.1380 20 8 6.1583 1.6524 1.2461 21 8 5.3778 3.2579 -0.0564 22 6 3.5618 -0.5445 1.3262 23 6 2.0452 -0.7308 1.2459 24 1 -0.3633 0.5077 0.8934 25 1 -0.3633 0.5200 -0.8864 26 1 -0.3634 -1.0276 -0.0071 27 1 1.5403 -1.6905 -1.3331 28 1 1.8452 -0.1277 -2.1259 29 1 4.0775 -1.1922 -2.0253 30 1 8.9753 2.5096 -0.7175 31 1 6.6311 1.4791 -1.7699 32 1 4.9703 0.9122 -1.4723 33 1 5.3209 3.8311 0.7204 34 1 3.9660 -1.1995 2.0980 35 1 3.7836 0.4922 1.5794 36 1 1.8102 -1.7926 1.1710 37 1 1.5771 -0.3112 2.1364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594291868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:40 Heat of formation + Delta-G solvation = -116.310497 kcal Electronic energy + Delta-G solvation = -21585.067119 eV Core-core repulsion = 18327.486744 eV Total energy + Delta-G solvation = -3257.580376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71119 -38.63318 -37.45510 -35.19278 -34.46007 -32.63676 -31.47513 -30.50944 -27.69221 -26.97998 -24.62094 -22.88438 -21.56019 -20.91848 -19.69911 -17.72846 -17.16357 -16.82258 -16.19473 -15.56763 -15.03173 -14.44571 -14.32163 -14.24478 -14.10541 -13.57373 -13.39576 -12.96116 -12.58338 -12.33419 -12.14040 -11.94104 -11.70082 -11.61888 -11.49267 -11.31784 -10.94075 -10.58615 -10.47185 -10.39758 -10.36600 -10.29879 -10.04005 -9.62807 -9.05476 -8.62515 -8.29355 -7.89913 -6.43312 -3.95401 2.40210 3.16636 3.22576 3.26362 3.49158 3.68237 4.10822 4.27939 4.73660 4.85173 4.92887 5.04419 5.07562 5.46802 5.56298 5.58617 5.62665 5.69930 5.79998 5.85743 5.95809 6.00628 6.09528 6.15579 6.29275 6.32192 6.36321 6.51974 6.56997 6.71102 6.90298 7.25236 7.48913 7.53734 7.99096 8.37011 9.05502 9.08121 9.29143 9.83542 10.63980 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.006715 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.964714 B = 4168.594717 C = 4655.707007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.077 4.077 5 C -0.152 4.152 6 C -0.117 4.117 7 C 0.492 3.508 8 O -0.574 6.574 9 N -0.426 5.426 10 C -0.300 4.300 11 H 0.105 0.895 12 C 0.029 3.971 13 N -0.892 5.892 14 Si 0.937 3.063 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.145 3.855 19 C 0.495 3.505 20 O -0.509 6.509 21 O -0.534 6.534 22 C -0.072 4.072 23 C -0.111 4.111 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.272 0.728 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.390 0.610 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 2.581 -2.429 12.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.114 4.114 5 C -0.171 4.171 6 C -0.121 4.121 7 C 0.281 3.719 8 O -0.458 6.458 9 N -0.145 5.145 10 C -0.427 4.427 11 H 0.122 0.878 12 C -0.173 4.173 13 N -0.533 5.533 14 Si 0.764 3.236 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.019 3.981 19 C 0.336 3.664 20 O -0.395 6.395 21 O -0.345 6.345 22 C -0.110 4.110 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.246 0.754 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.010 1.873 -2.256 12.362 hybrid contribution 1.102 0.552 0.424 1.304 sum -10.908 2.425 -1.832 11.323 Atomic orbital electron populations 1.21810 0.95285 1.01600 1.01451 1.21221 0.95086 0.99933 0.95214 0.90892 1.20456 0.92754 1.00346 0.97864 1.22459 0.95859 1.01836 0.96976 1.21005 0.94755 1.00489 0.95816 1.18303 0.86077 0.86224 0.81315 1.90643 1.77858 1.28068 1.49230 1.43311 1.07445 1.11436 1.52301 1.19680 0.80487 0.94840 1.47710 0.87767 1.25314 1.00586 0.94659 0.96727 1.69616 1.36148 0.99080 1.48462 0.85818 0.81120 0.77575 0.79126 1.19806 1.20919 1.19801 1.20745 0.99908 0.83814 0.93644 1.23795 0.71172 0.80281 0.91192 1.90599 1.44978 1.77073 1.26834 1.84531 1.79764 1.26319 1.43872 1.20250 0.94128 1.02055 0.94533 1.21660 0.95136 1.00634 0.97411 0.92811 0.92780 0.92791 0.90948 0.91022 0.87438 0.91723 0.84851 0.90554 0.75391 0.90532 0.90753 0.91735 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.10 -1.17 2.76 -90.43 -0.25 -1.42 16 3 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 4 C -0.08 -0.98 5.44 -28.17 -0.15 -1.13 16 5 C -0.15 -2.54 7.91 -36.47 -0.29 -2.83 16 6 C -0.12 -2.35 4.39 -103.26 -0.45 -2.80 16 7 C 0.49 12.55 6.52 -12.73 -0.08 12.47 16 8 O -0.57 -16.82 16.81 5.22 0.09 -16.74 16 9 N -0.43 -11.03 2.18 -117.50 -0.26 -11.29 16 10 C -0.30 -8.36 9.31 -15.02 -0.14 -8.50 16 11 H 0.10 3.02 7.40 -52.49 -0.39 2.63 16 12 C 0.03 0.76 5.13 -17.45 -0.09 0.67 16 13 N -0.89 -23.49 8.87 55.50 0.49 -23.00 16 14 Si 0.94 20.84 29.56 -169.99 -5.03 15.81 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.15 3.26 4.97 -5.20 -0.03 3.24 16 19 C 0.49 11.20 6.39 36.01 0.23 11.43 16 20 O -0.51 -13.36 16.60 -18.75 -0.31 -13.67 16 21 O -0.53 -9.81 13.42 -39.26 -0.53 -10.33 16 22 C -0.07 -1.30 5.79 -28.17 -0.16 -1.46 16 23 C -0.11 -1.51 5.29 -26.54 -0.14 -1.65 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.85 8.11 -51.93 -0.42 0.42 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.82 7.95 -52.49 -0.42 1.40 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 31 H 0.13 3.12 6.25 -51.93 -0.32 2.79 16 32 H 0.08 1.47 5.90 -51.93 -0.31 1.16 16 33 H 0.39 5.50 9.10 45.56 0.41 5.92 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 36 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -33.44 307.87 -6.48 -39.92 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.37 Total: 7.68 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.21 Total: 6.97 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.24 Total: -34.29 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.75 Total: -40.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.44 -6.48 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594291868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.387 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds