Wall clock time and date at job start Mon Mar 30 2020 00:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.63172 * 2 1 4 4 C 1.53005 * 109.79122 * 239.51298 * 2 1 3 5 5 C 1.50100 * 110.08101 * 190.23596 * 4 2 1 6 6 C 1.31697 * 123.76910 * 17.62457 * 5 4 2 7 7 C 1.46949 * 118.11511 * 179.34798 * 6 5 4 8 8 O 1.21661 * 119.99936 * 252.84619 * 7 6 5 9 9 N 1.34781 * 119.99914 * 72.84340 * 7 6 5 10 10 C 1.36818 * 119.99713 * 184.08243 * 9 7 6 11 11 H 1.07998 * 119.99827 * 20.92522 * 10 9 7 12 12 C 1.39072 * 120.00013 * 200.64415 * 10 9 7 13 13 N 1.31356 * 120.00046 * 9.95894 * 12 10 9 14 14 Si 1.86796 * 120.00054 * 189.96588 * 12 10 9 15 15 H 1.48494 * 109.47437 * 59.99937 * 14 12 10 16 16 H 1.48502 * 109.47181 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47059 * 299.99599 * 14 12 10 18 18 C 1.46495 * 119.99968 * 4.08662 * 9 7 6 19 19 C 1.50701 * 109.47285 * 83.46492 * 18 9 7 20 20 O 1.20830 * 120.00036 * 359.97438 * 19 18 9 21 21 O 1.34230 * 120.00548 * 179.97438 * 19 18 9 22 22 C 1.50099 * 123.76952 * 359.06297 * 6 5 4 23 23 C 1.53007 * 110.13157 * 17.43116 * 22 6 5 24 24 H 1.08994 * 109.47306 * 299.60827 * 1 2 3 25 25 H 1.09002 * 109.46939 * 59.60518 * 1 2 3 26 26 H 1.09002 * 109.47359 * 179.60399 * 1 2 3 27 27 H 1.09005 * 109.36204 * 310.63085 * 4 2 1 28 28 H 1.09000 * 109.36317 * 70.36164 * 4 2 1 29 29 H 1.07999 * 118.12326 * 197.39024 * 5 4 2 30 30 H 0.96992 * 120.00284 * 179.97438 * 13 12 10 31 31 H 1.09001 * 109.47055 * 203.46042 * 18 9 7 32 32 H 1.08998 * 109.47527 * 323.46577 * 18 9 7 33 33 H 0.96700 * 117.00394 * 179.97438 * 21 19 18 34 34 H 1.09000 * 109.36034 * 137.63292 * 22 6 5 35 35 H 1.09000 * 109.36116 * 257.36617 * 22 6 5 36 36 H 1.09004 * 109.62911 * 69.94079 * 23 22 6 37 37 H 1.09006 * 109.63087 * 190.51989 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0480 -0.7304 -1.2406 5 6 3.5279 -0.9540 -1.1266 6 6 4.1941 -0.8808 0.0070 7 6 5.6408 -1.1370 -0.0221 8 8 6.0843 -2.1733 0.4356 9 7 6.4763 -0.2241 -0.5560 10 6 7.8129 -0.4977 -0.6592 11 1 8.1574 -1.5211 -0.6415 12 6 8.7272 0.5416 -0.7928 13 7 8.3376 1.7848 -0.6247 14 14 10.5092 0.1698 -1.2115 15 1 10.5744 -0.5352 -2.5167 16 1 11.2733 1.4404 -1.2960 17 1 11.0970 -0.6911 -0.1538 18 6 5.9533 1.0612 -1.0256 19 6 5.8374 2.0118 0.1380 20 8 6.1583 1.6524 1.2461 21 8 5.3778 3.2579 -0.0564 22 6 3.5618 -0.5445 1.3262 23 6 2.0452 -0.7308 1.2459 24 1 -0.3633 0.5077 0.8934 25 1 -0.3633 0.5200 -0.8864 26 1 -0.3634 -1.0276 -0.0071 27 1 1.5403 -1.6905 -1.3331 28 1 1.8452 -0.1277 -2.1259 29 1 4.0775 -1.1922 -2.0253 30 1 8.9753 2.5096 -0.7175 31 1 6.6311 1.4791 -1.7699 32 1 4.9703 0.9122 -1.4723 33 1 5.3209 3.8311 0.7204 34 1 3.9660 -1.1995 2.0980 35 1 3.7836 0.4922 1.5794 36 1 1.8102 -1.7926 1.1710 37 1 1.5771 -0.3112 2.1364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594291868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:40 Heat of formation + Delta-G solvation = -138.457169 kcal Electronic energy + Delta-G solvation = -21586.027471 eV Core-core repulsion = 18327.486744 eV Total energy + Delta-G solvation = -3258.540728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.47061 -40.27710 -38.94346 -37.03499 -36.37544 -34.16434 -33.20825 -31.75460 -29.56420 -28.23739 -26.41021 -24.10156 -23.15518 -22.44845 -21.15252 -19.32265 -19.03310 -18.61465 -17.81411 -17.41083 -16.83373 -16.24180 -16.02105 -15.62273 -15.31380 -15.08974 -14.96768 -14.28977 -13.90824 -13.83510 -13.60441 -13.37728 -13.27799 -13.26173 -12.82297 -12.71505 -12.55602 -12.36097 -12.19705 -12.12939 -11.68380 -11.56941 -11.39772 -11.13957 -11.00495 -10.45640 -9.96303 -9.77045 -8.45699 -6.06534 0.92862 1.36403 1.38834 1.50146 1.68611 1.85056 2.24703 2.53798 2.97703 3.06977 3.69320 3.78895 3.94235 4.18784 4.27038 4.32940 4.35860 4.53600 4.66591 4.77357 4.83230 4.89612 4.92706 5.02810 5.04353 5.06287 5.12919 5.28873 5.36464 5.38503 5.59180 5.61148 5.85077 5.93401 5.97457 6.35034 7.03084 7.23597 7.43672 7.85317 8.58984 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.026738 B = 0.006715 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.964714 B = 4168.594717 C = 4655.707007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.067 0.933 4 C -0.077 4.077 5 C -0.116 4.116 6 C -0.154 4.154 7 C 0.478 3.522 8 O -0.631 6.631 9 N -0.436 5.436 10 C -0.342 4.342 11 H 0.077 0.923 12 C -0.001 4.001 13 N -0.899 5.899 14 Si 0.999 3.001 15 H -0.259 1.259 16 H -0.269 1.269 17 H -0.284 1.284 18 C 0.146 3.854 19 C 0.503 3.497 20 O -0.552 6.552 21 O -0.517 6.517 22 C -0.065 4.065 23 C -0.103 4.103 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.277 0.723 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.413 0.587 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 3.988 -3.899 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.113 4.113 5 C -0.135 4.135 6 C -0.157 4.157 7 C 0.270 3.730 8 O -0.519 6.519 9 N -0.153 5.153 10 C -0.469 4.469 11 H 0.095 0.905 12 C -0.202 4.202 13 N -0.539 5.539 14 Si 0.822 3.178 15 H -0.184 1.184 16 H -0.193 1.193 17 H -0.210 1.210 18 C 0.021 3.979 19 C 0.346 3.654 20 O -0.441 6.441 21 O -0.329 6.329 22 C -0.103 4.103 23 C -0.140 4.140 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.272 0.728 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.124 3.352 -3.753 14.994 hybrid contribution 1.735 0.181 0.845 1.938 sum -12.389 3.533 -2.908 13.207 Atomic orbital electron populations 1.21752 0.92665 1.02509 1.02568 1.21222 0.97111 0.99119 0.93742 0.91447 1.20633 0.89170 1.02116 0.99426 1.22864 0.98337 0.97007 0.95314 1.20781 0.91604 1.05272 0.98032 1.19281 0.88505 0.85220 0.80025 1.90572 1.79528 1.30230 1.51589 1.43487 1.07051 1.12652 1.52136 1.19649 0.82323 0.94329 1.50613 0.90479 1.26087 1.04139 0.94311 0.95649 1.69701 1.37328 0.99431 1.47410 0.84908 0.76142 0.77785 0.78929 1.18372 1.19313 1.20993 1.20817 1.01089 0.82563 0.93448 1.23673 0.70259 0.81180 0.90308 1.90593 1.47061 1.78111 1.28361 1.84446 1.78645 1.24820 1.44971 1.20181 0.97241 1.00248 0.92629 1.21654 0.91524 1.01417 0.99433 0.92141 0.91328 0.92001 0.88792 0.88094 0.87788 0.91304 0.85704 0.87326 0.72795 0.93631 0.92256 0.91330 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.09 -1.94 2.76 -10.67 -0.03 -1.97 16 3 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 4 C -0.08 -1.64 5.44 29.66 0.16 -1.48 16 5 C -0.12 -3.70 7.91 24.81 0.20 -3.50 16 6 C -0.15 -6.24 4.39 -18.45 -0.08 -6.33 16 7 C 0.48 25.64 6.52 86.52 0.56 26.20 16 8 O -0.63 -39.55 16.81 -4.22 -0.07 -39.62 16 9 N -0.44 -23.40 2.18 -643.88 -1.40 -24.80 16 10 C -0.34 -19.90 9.31 84.12 0.78 -19.12 16 11 H 0.08 4.78 7.40 -2.91 -0.02 4.76 16 12 C 0.00 -0.06 5.13 84.96 0.44 0.38 16 13 N -0.90 -47.34 8.87 21.68 0.19 -47.14 16 14 Si 1.00 43.06 29.56 68.60 2.03 45.09 16 15 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 C 0.15 6.58 4.97 85.63 0.43 7.01 16 19 C 0.50 22.64 6.39 71.24 0.46 23.10 16 20 O -0.55 -29.55 16.60 21.95 0.36 -29.18 16 21 O -0.52 -17.98 13.42 -51.41 -0.69 -18.67 16 22 C -0.07 -2.39 5.79 29.66 0.17 -2.22 16 23 C -0.10 -2.60 5.29 30.72 0.16 -2.44 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.75 8.11 -2.38 -0.02 1.73 16 28 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.10 3.37 7.95 -2.91 -0.02 3.35 16 30 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.13 5.83 6.25 -2.39 -0.01 5.82 16 32 H 0.11 4.06 5.90 -2.39 -0.01 4.04 16 33 H 0.41 10.71 9.10 -74.06 -0.67 10.03 16 34 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 2.28 7.91 -2.39 -0.02 2.26 16 36 H 0.07 1.69 8.12 -2.38 -0.02 1.67 16 37 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -76.94 307.87 4.74 -72.20 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.41 Total: 23.83 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 3.91 Total: 18.29 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.21 Total: -71.94 kcal Atomic # 8 Polarization: -87.07 SS G_CDS: -0.40 Total: -87.47 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -76.94 4.74 -72.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594291868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.256 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds