Wall clock time and date at job start Mon Mar 30 2020 00:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.50244 * 130.83514 * 359.66526 * 14 12 2 16 16 C 1.56298 * 100.84147 * 126.10618 * 15 14 12 17 17 C 1.54856 * 103.40739 * 33.11872 * 16 15 14 18 18 C 1.50239 * 130.84065 * 179.97438 * 14 12 2 19 19 C 1.50701 * 115.85854 * 359.61313 * 18 14 12 20 20 O 1.20824 * 119.99954 * 144.99502 * 19 18 14 21 21 O 1.34226 * 119.99619 * 324.99482 * 19 18 14 22 22 C 1.55850 * 101.04822 * 126.00014 * 18 14 12 23 23 C 1.54223 * 103.56558 * 32.85284 * 22 18 14 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08990 * 115.85941 * 0.38482 * 15 14 12 29 29 H 1.09004 * 110.75600 * 274.59256 * 16 15 14 30 30 H 1.08994 * 110.67829 * 151.61056 * 16 15 14 31 31 H 1.09000 * 110.62864 * 241.38745 * 17 16 15 32 32 H 1.08997 * 110.62420 * 118.36992 * 17 16 15 33 33 H 0.96702 * 116.99760 * 179.97438 * 21 19 18 34 34 H 1.08996 * 110.62804 * 151.42920 * 22 18 14 35 35 H 1.09003 * 110.62368 * 274.45060 * 22 18 14 36 36 H 1.08997 * 110.49384 * 241.50898 * 23 22 18 37 37 H 1.08992 * 110.64489 * 118.56316 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.8679 0.9250 -2.8712 16 6 1.8602 1.6735 -3.8188 17 6 2.6728 0.5256 -4.4668 18 6 2.0658 -0.7567 -3.8226 19 6 2.9435 -1.9811 -3.8603 20 8 2.7932 -2.8055 -4.7308 21 8 3.8922 -2.1557 -2.9270 22 6 0.6542 -0.9040 -4.4665 23 6 -0.1587 0.2367 -3.8211 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 0.4478 1.5204 -2.0607 29 1 2.5149 2.3333 -3.2492 30 1 1.3171 2.2358 -4.5783 31 1 3.7303 0.6160 -4.2186 32 1 2.5304 0.5169 -5.5474 33 1 4.4302 -2.9566 -2.9923 34 1 0.7095 -0.7727 -5.5471 35 1 0.2179 -1.8715 -4.2180 36 1 -0.9972 -0.1663 -3.2532 37 1 -0.5084 0.9364 -4.5800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:30 Heat of formation + Delta-G solvation = -101.064047 kcal Electronic energy + Delta-G solvation = -21831.647921 eV Core-core repulsion = 18574.728681 eV Total energy + Delta-G solvation = -3256.919240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02054 -39.17923 -37.49610 -35.70634 -33.74627 -31.39116 -30.59803 -30.25182 -29.49855 -25.15796 -24.18572 -22.89618 -22.26203 -21.19978 -19.27857 -18.83818 -17.46523 -16.63891 -16.07995 -15.62423 -15.53826 -15.03583 -14.66397 -14.27211 -13.71547 -13.42796 -13.10861 -12.69480 -12.63083 -12.37624 -12.20014 -11.81748 -11.52454 -11.42001 -11.30874 -11.06747 -10.98927 -10.73098 -10.68136 -10.45750 -10.33441 -10.25033 -10.05866 -9.93051 -8.96242 -8.53527 -8.27113 -8.25797 -6.03361 -4.05934 2.29256 3.20307 3.33456 3.34641 3.39512 3.48064 3.71704 4.40959 4.49867 4.70482 4.73990 4.98607 5.19050 5.26559 5.28568 5.30800 5.32496 5.45428 5.53069 5.80530 5.89014 5.93854 6.09504 6.11180 6.16287 6.24072 6.56650 6.66249 6.78851 6.85994 6.95725 7.48958 7.76042 8.01276 8.15386 8.23679 8.44158 9.02768 9.26968 9.59393 11.04290 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.006794 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.309550 B = 4120.375672 C = 4784.149410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.040 3.960 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.538 3.462 13 O -0.515 6.515 14 N -0.629 5.629 15 C 0.125 3.875 16 C -0.130 4.130 17 C -0.114 4.114 18 C 0.142 3.858 19 C 0.513 3.487 20 O -0.528 6.528 21 O -0.463 6.463 22 C -0.104 4.104 23 C -0.131 4.131 24 H 0.029 0.971 25 H 0.092 0.908 26 H 0.018 0.982 27 H 0.260 0.740 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 3.055 -14.168 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.019 3.981 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.213 1.213 12 C 0.330 3.670 13 O -0.388 6.388 14 N -0.370 5.370 15 C 0.022 3.978 16 C -0.168 4.168 17 C -0.152 4.152 18 C 0.055 3.945 19 C 0.355 3.645 20 O -0.418 6.418 21 O -0.271 6.271 22 C -0.143 4.143 23 C -0.169 4.169 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.256 0.744 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.828 2.669 -13.942 14.219 hybrid contribution 0.622 -0.977 0.761 1.386 sum -0.205 1.693 -13.180 13.290 Atomic orbital electron populations 1.21870 0.96624 0.99842 1.01088 1.18807 0.94069 0.96669 0.88552 0.93185 1.21154 1.30892 1.12765 0.88939 0.90812 1.24937 0.95158 0.95065 0.99054 1.69868 1.37209 1.23073 1.23498 0.86458 0.79447 0.79246 0.82095 1.20720 1.19772 1.21298 1.21895 0.78356 0.84450 0.82300 1.90587 1.37052 1.26451 1.84698 1.51002 1.52934 1.30187 1.02876 1.23818 0.90782 0.87572 0.95647 1.23053 0.98225 0.96825 0.98717 1.22855 1.00388 0.92416 0.99569 1.22300 0.94435 0.90877 0.86856 1.22181 0.78872 0.85615 0.77855 1.90676 1.69725 1.44118 1.37245 1.84938 1.44891 1.47115 1.50130 1.22603 0.91985 1.00081 0.99608 1.22878 0.98057 0.97305 0.98692 0.95215 0.88917 0.96309 0.92991 0.85063 0.90536 0.90226 0.90757 0.90112 0.74367 0.90007 0.90893 0.90552 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.77 37.16 0.33 -2.76 16 2 C 0.04 0.99 2.27 -92.93 -0.21 0.78 16 3 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 4 C -0.50 -14.10 8.37 -34.44 -0.29 -14.39 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.54 12.39 7.27 -10.99 -0.08 12.31 16 13 O -0.51 -13.22 12.12 -19.21 -0.23 -13.45 16 14 N -0.63 -11.34 2.88 -140.33 -0.40 -11.74 16 15 C 0.13 1.71 4.10 -62.52 -0.26 1.45 16 16 C -0.13 -1.43 6.46 -23.98 -0.15 -1.59 16 17 C -0.11 -1.39 6.08 -24.25 -0.15 -1.53 16 18 C 0.14 2.22 1.69 -127.86 -0.22 2.00 16 19 C 0.51 9.07 7.34 36.01 0.26 9.33 16 20 O -0.53 -9.84 17.45 -18.75 -0.33 -10.17 16 21 O -0.46 -8.32 9.89 -47.44 -0.47 -8.79 16 22 C -0.10 -1.36 5.76 -24.57 -0.14 -1.50 16 23 C -0.13 -1.50 6.41 -24.55 -0.16 -1.66 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 26 H 0.02 0.34 5.15 -51.93 -0.27 0.07 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.13 1.82 6.20 -51.93 -0.32 1.50 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.65 7.84 -51.93 -0.41 0.24 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.79 7.81 -51.93 -0.41 0.39 16 33 H 0.40 5.34 9.10 45.56 0.41 5.76 16 34 H 0.08 0.88 7.81 -51.93 -0.41 0.47 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.68 7.83 -51.93 -0.41 0.27 16 LS Contribution 296.05 15.07 4.46 4.46 Total: -1.00 -33.26 296.05 -6.66 -39.92 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.14 Total: 3.32 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.16 Total: 3.96 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.22 Total: -36.05 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.03 Total: -32.41 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.26 -6.66 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.142 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds