Wall clock time and date at job start Mon Mar 30 2020 00:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.50244 * 130.83514 * 359.66526 * 14 12 2 16 16 C 1.56298 * 100.84147 * 126.10618 * 15 14 12 17 17 C 1.54856 * 103.40739 * 33.11872 * 16 15 14 18 18 C 1.50239 * 130.84065 * 179.97438 * 14 12 2 19 19 C 1.50701 * 115.85854 * 359.61313 * 18 14 12 20 20 O 1.20824 * 119.99954 * 144.99502 * 19 18 14 21 21 O 1.34226 * 119.99619 * 324.99482 * 19 18 14 22 22 C 1.55850 * 101.04822 * 126.00014 * 18 14 12 23 23 C 1.54223 * 103.56558 * 32.85284 * 22 18 14 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08990 * 115.85941 * 0.38482 * 15 14 12 29 29 H 1.09004 * 110.75600 * 274.59256 * 16 15 14 30 30 H 1.08994 * 110.67829 * 151.61056 * 16 15 14 31 31 H 1.09000 * 110.62864 * 241.38745 * 17 16 15 32 32 H 1.08997 * 110.62420 * 118.36992 * 17 16 15 33 33 H 0.96702 * 116.99760 * 179.97438 * 21 19 18 34 34 H 1.08996 * 110.62804 * 151.42920 * 22 18 14 35 35 H 1.09003 * 110.62368 * 274.45060 * 22 18 14 36 36 H 1.08997 * 110.49384 * 241.50898 * 23 22 18 37 37 H 1.08992 * 110.64489 * 118.56316 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.8679 0.9250 -2.8712 16 6 1.8602 1.6735 -3.8188 17 6 2.6728 0.5256 -4.4668 18 6 2.0658 -0.7567 -3.8226 19 6 2.9435 -1.9811 -3.8603 20 8 2.7932 -2.8055 -4.7308 21 8 3.8922 -2.1557 -2.9270 22 6 0.6542 -0.9040 -4.4665 23 6 -0.1587 0.2367 -3.8211 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 0.7089 1.1611 3.4845 28 1 0.4478 1.5204 -2.0607 29 1 2.5149 2.3333 -3.2492 30 1 1.3171 2.2358 -4.5783 31 1 3.7303 0.6160 -4.2186 32 1 2.5304 0.5169 -5.5474 33 1 4.4302 -2.9566 -2.9923 34 1 0.7095 -0.7727 -5.5471 35 1 0.2179 -1.8715 -4.2180 36 1 -0.9972 -0.1663 -3.2532 37 1 -0.5084 0.9364 -4.5800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604060768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:29 Heat of formation + Delta-G solvation = -123.126797 kcal Electronic energy + Delta-G solvation = -21832.604634 eV Core-core repulsion = 18574.728681 eV Total energy + Delta-G solvation = -3257.875953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.26691 -40.54911 -39.14560 -37.11242 -35.75626 -33.13353 -31.69961 -31.48913 -30.88957 -27.21143 -25.58708 -24.42753 -23.19068 -22.72927 -20.49950 -20.21279 -18.87075 -18.32089 -18.02422 -17.00050 -16.86708 -16.50564 -16.23311 -15.70204 -15.33264 -15.01766 -14.41475 -14.15819 -13.92211 -13.67886 -13.56992 -13.32883 -12.98205 -12.73032 -12.72190 -12.66141 -12.44713 -12.28235 -12.20549 -12.10850 -11.95553 -11.70528 -11.57854 -11.04911 -11.01208 -10.56497 -10.13232 -9.69187 -8.15341 -6.24884 0.94266 1.38935 1.39665 1.51318 1.94055 2.03213 2.04930 2.44425 3.14004 3.34502 3.57675 3.72036 4.02615 4.15363 4.15611 4.24952 4.35032 4.37367 4.50217 4.73371 4.76716 4.92808 4.95005 4.99059 5.01571 5.11921 5.12525 5.22883 5.36498 5.38806 5.48823 5.53305 5.74229 5.97077 6.23486 6.73268 6.86217 6.94858 7.41360 7.57572 8.90478 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.006794 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.309550 B = 4120.375672 C = 4784.149410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.038 3.962 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.533 3.467 13 O -0.557 6.557 14 N -0.633 5.633 15 C 0.109 3.891 16 C -0.118 4.118 17 C -0.107 4.107 18 C 0.125 3.875 19 C 0.505 3.495 20 O -0.544 6.544 21 O -0.481 6.481 22 C -0.100 4.100 23 C -0.119 4.119 24 H 0.014 0.986 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.265 0.735 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.412 0.588 34 H 0.116 0.884 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 4.642 -16.127 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.017 3.983 3 H 0.054 0.946 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.198 1.198 12 C 0.324 3.676 13 O -0.434 6.434 14 N -0.372 5.372 15 C 0.008 3.992 16 C -0.156 4.156 17 C -0.146 4.146 18 C 0.040 3.960 19 C 0.348 3.652 20 O -0.435 6.435 21 O -0.290 6.290 22 C -0.139 4.139 23 C -0.157 4.157 24 H 0.033 0.967 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.271 0.729 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.937 4.298 -15.940 16.623 hybrid contribution 0.983 -1.469 1.316 2.203 sum -0.955 2.829 -14.624 14.926 Atomic orbital electron populations 1.21661 0.95136 0.99017 1.01959 1.18672 0.95200 0.95508 0.88903 0.94619 1.21289 1.31494 1.12645 0.91165 0.93581 1.25556 0.95257 0.95759 1.01240 1.69939 1.37217 1.23447 1.24258 0.85633 0.78549 0.78581 0.79325 1.20126 1.20560 1.19797 1.21379 0.78427 0.84089 0.83706 1.90553 1.38920 1.28073 1.85862 1.50857 1.52520 1.31252 1.02557 1.24213 0.91820 0.86661 0.96510 1.23071 0.97471 0.96123 0.98888 1.22947 0.99655 0.90470 1.01485 1.22824 0.96085 0.91517 0.85607 1.22745 0.78829 0.86281 0.77358 1.90651 1.70242 1.44818 1.37812 1.84930 1.45392 1.48134 1.50587 1.22698 0.89961 0.99713 1.01501 1.22908 0.96605 0.97203 0.98959 0.96697 0.91099 0.92260 0.92588 0.85602 0.91223 0.85608 0.92010 0.86466 0.72891 0.86615 0.93188 0.91318 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.77 71.98 0.63 -4.85 16 2 C 0.04 1.95 2.27 -12.29 -0.03 1.92 16 3 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.53 -30.97 8.37 25.60 0.21 -30.75 16 5 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 6 C 0.02 1.19 5.30 84.66 0.45 1.63 16 7 N -0.91 -50.96 11.32 21.45 0.24 -50.71 16 8 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 12 C 0.53 25.23 7.27 87.66 0.64 25.87 16 13 O -0.56 -29.95 12.12 20.65 0.25 -29.70 16 14 N -0.63 -22.38 2.88 -716.28 -2.06 -24.44 16 15 C 0.11 2.66 4.10 46.40 0.19 2.85 16 16 C -0.12 -2.09 6.46 32.38 0.21 -1.88 16 17 C -0.11 -2.24 6.08 32.20 0.20 -2.05 16 18 C 0.13 3.71 1.69 4.08 0.01 3.72 16 19 C 0.50 17.86 7.34 71.24 0.52 18.38 16 20 O -0.54 -20.16 17.45 21.97 0.38 -19.77 16 21 O -0.48 -17.92 9.89 -43.54 -0.43 -18.35 16 22 C -0.10 -2.30 5.76 31.99 0.18 -2.11 16 23 C -0.12 -2.21 6.41 32.01 0.21 -2.00 16 24 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 26 H 0.06 2.15 5.15 -2.38 -0.01 2.14 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.13 3.19 6.20 -2.39 -0.01 3.18 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.13 1.17 7.84 -2.39 -0.02 1.16 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 1.65 7.81 -2.39 -0.02 1.63 16 33 H 0.41 11.71 9.10 -74.06 -0.67 11.03 16 34 H 0.12 1.89 7.81 -2.39 -0.02 1.87 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.13 1.26 7.83 -2.39 -0.02 1.24 16 Total: -1.00 -75.64 296.05 4.25 -71.39 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.42 Total: 13.42 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 3.42 Total: 10.73 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.82 Total: -75.16 kcal Atomic # 8 Polarization: -68.02 SS G_CDS: 0.20 Total: -67.81 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.64 4.25 -71.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.737 kcal (2) G-P(sol) polarization free energy of solvation -75.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds