Wall clock time and date at job start Mon Mar 30 2020 00:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47480 * 2 1 4 4 C 1.36935 * 119.99811 * 85.73578 * 3 2 1 5 5 H 1.08006 * 119.99930 * 182.47141 * 4 3 2 6 6 C 1.38811 * 120.00313 * 2.46381 * 4 3 2 7 7 N 1.31622 * 119.99693 * 331.08400 * 6 4 3 8 8 Si 1.86800 * 120.00299 * 151.08055 * 6 4 3 9 9 H 1.48496 * 109.47133 * 94.99754 * 8 6 4 10 10 H 1.48499 * 109.47403 * 214.99960 * 8 6 4 11 11 H 1.48502 * 109.46982 * 335.00098 * 8 6 4 12 12 C 1.46505 * 120.00112 * 265.73585 * 3 2 1 13 13 H 1.08998 * 109.46630 * 174.62484 * 12 3 2 14 14 C 1.52990 * 109.47204 * 54.62518 * 12 3 2 15 15 C 1.50696 * 109.47188 * 294.62256 * 12 3 2 16 16 C 1.35165 * 125.60987 * 217.84292 * 15 12 3 17 17 C 1.40316 * 107.12433 * 179.97438 * 16 15 12 18 18 C 1.50705 * 126.64453 * 180.02562 * 17 16 15 19 19 C 1.36634 * 106.70364 * 359.97438 * 17 16 15 20 20 C 1.46471 * 125.99649 * 179.97438 * 19 17 16 21 21 O 1.21629 * 120.00003 * 359.97438 * 20 19 17 22 22 O 1.34895 * 120.00105 * 180.02562 * 20 19 17 23 23 O 1.33917 * 125.60778 * 38.07929 * 15 12 3 24 24 H 1.08998 * 109.47262 * 306.90079 * 1 2 3 25 25 H 1.09001 * 109.47140 * 66.89908 * 1 2 3 26 26 H 1.08997 * 109.47405 * 186.89794 * 1 2 3 27 27 H 1.09007 * 109.47177 * 239.99943 * 2 1 3 28 28 H 1.08999 * 109.47023 * 120.00770 * 2 1 3 29 29 H 0.97002 * 119.99566 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47457 * 300.00056 * 14 12 3 31 31 H 1.08998 * 109.47328 * 59.99862 * 14 12 3 32 32 H 1.08994 * 109.47505 * 179.97438 * 14 12 3 33 33 H 1.07994 * 126.44114 * 359.93507 * 16 15 12 34 34 H 1.08992 * 109.47140 * 269.99498 * 18 17 16 35 35 H 1.09006 * 109.47260 * 29.99902 * 18 17 16 36 36 H 1.09002 * 109.47020 * 149.99096 * 18 17 16 37 37 H 0.96710 * 116.99723 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1635 2.0560 1.1826 5 1 2.4854 3.0870 1.1801 6 6 1.8968 1.4152 2.3847 7 7 1.0121 0.4416 2.4294 8 14 2.7933 1.9345 3.9391 9 1 1.9637 2.9144 4.6851 10 1 3.0381 0.7430 4.7909 11 1 4.0911 2.5589 3.5768 12 6 2.3515 2.0403 -1.2652 13 1 2.6032 3.0838 -1.0759 14 6 1.1499 1.9687 -2.2095 15 6 3.5299 1.3463 -1.8982 16 6 4.5343 1.9539 -2.5683 17 6 5.4177 0.9483 -2.9893 18 6 6.6900 1.1395 -3.7742 19 6 4.9016 -0.2376 -2.5487 20 6 5.4895 -1.5628 -2.7574 21 8 6.5322 -1.6754 -3.3733 22 8 4.8739 -2.6585 -2.2674 23 8 3.7520 0.0257 -1.8931 24 1 -0.3634 0.6170 0.8218 25 1 -0.3633 0.4032 -0.9453 26 1 -0.3634 -1.0202 0.1234 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.8260 -0.0064 3.2693 30 1 0.8982 0.9252 -2.3988 31 1 0.2976 2.4707 -1.7517 32 1 1.3976 2.4595 -3.1507 33 1 4.6372 3.0140 -2.7468 34 1 6.4699 1.0899 -4.8405 35 1 7.1206 2.1124 -3.5369 36 1 7.3996 0.3546 -3.5127 37 1 5.2998 -3.5113 -2.4307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:21 Heat of formation + Delta-G solvation = -48.938380 kcal Electronic energy + Delta-G solvation = -21164.535467 eV Core-core repulsion = 17909.876565 eV Total energy + Delta-G solvation = -3254.658902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35275 -39.74129 -36.69755 -36.10993 -33.79299 -32.81449 -30.50631 -29.12639 -28.47201 -27.67080 -24.47994 -23.46482 -21.98816 -21.30849 -20.20636 -18.88853 -18.15212 -17.19079 -16.82430 -16.25251 -15.31521 -14.88516 -14.66458 -13.95703 -13.67448 -13.34487 -13.27948 -13.00140 -12.80975 -12.40466 -12.24744 -12.13539 -11.89522 -11.54736 -11.52835 -11.47537 -10.97513 -10.72822 -10.67824 -10.56898 -10.41662 -10.02106 -9.68996 -9.34011 -9.32466 -8.34288 -8.15219 -7.11664 -5.87309 -3.12673 1.14117 2.64030 2.77706 3.09780 3.35452 3.45669 3.48518 3.57222 4.42047 4.90096 4.97885 5.27255 5.29015 5.39521 5.60850 5.72930 5.77405 5.81627 5.93381 5.95279 6.16680 6.24833 6.28952 6.44936 6.49140 6.66916 6.72976 6.74566 7.00058 7.10038 7.19951 7.38041 7.63654 7.80217 7.97629 8.13609 8.24998 9.14221 9.75089 10.18622 11.14953 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.006222 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.297802 B = 4498.824817 C = 4591.364262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.165 3.835 3 N -0.583 5.583 4 C -0.267 4.267 5 H 0.079 0.921 6 C 0.010 3.990 7 N -0.881 5.881 8 Si 0.887 3.113 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.280 1.280 12 C 0.237 3.763 13 H 0.099 0.901 14 C -0.160 4.160 15 C 0.076 3.924 16 C -0.255 4.255 17 C -0.064 4.064 18 C -0.094 4.094 19 C -0.112 4.112 20 C 0.575 3.425 21 O -0.511 6.511 22 O -0.503 6.503 23 O -0.131 6.131 24 H 0.089 0.911 25 H 0.011 0.989 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.082 0.918 29 H 0.253 0.747 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.153 0.847 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 -0.554 -10.629 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.041 3.959 3 N -0.302 5.302 4 C -0.395 4.395 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.525 5.525 8 Si 0.715 3.285 9 H -0.217 1.217 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.125 3.875 13 H 0.117 0.883 14 C -0.219 4.219 15 C 0.018 3.982 16 C -0.275 4.275 17 C -0.066 4.066 18 C -0.151 4.151 19 C -0.161 4.161 20 C 0.422 3.578 21 O -0.403 6.403 22 O -0.313 6.313 23 O -0.024 6.024 24 H 0.108 0.892 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.171 0.829 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.013 -0.581 -10.384 11.546 hybrid contribution 0.797 -0.269 0.781 1.148 sum 5.810 -0.851 -9.603 11.256 Atomic orbital electron populations 1.22330 0.98722 0.99345 0.99808 1.20933 0.92639 0.83638 0.98701 1.44356 1.73996 1.11616 1.00246 1.19235 1.40882 0.96260 0.83132 0.90351 1.24720 0.98301 0.98288 0.97479 1.70322 1.29732 1.27070 1.25397 0.86523 0.80752 0.77528 0.83654 1.21652 1.21499 1.20576 1.19239 0.87342 0.94516 0.86363 0.88289 1.22397 0.98861 1.02360 0.98272 1.25269 0.99173 0.79858 0.93901 1.21405 0.97023 1.00504 1.08582 1.20524 0.97454 0.90786 0.97840 1.20427 0.93083 1.02904 0.98644 1.20294 0.92965 0.92029 1.10843 1.18936 0.81030 0.82844 0.75027 1.90911 1.22788 1.86217 1.40348 1.84752 1.55016 1.18014 1.73556 1.84325 1.34301 1.25724 1.58075 0.89248 0.96981 0.96048 0.96365 0.89999 0.93636 0.92313 0.91295 0.93349 0.82884 0.90906 0.91294 0.90008 0.72982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.18 37.15 0.34 -2.93 16 2 C 0.17 3.96 4.65 -4.05 -0.02 3.94 16 3 N -0.58 -13.78 2.43 -166.99 -0.41 -14.19 16 4 C -0.27 -6.93 9.68 -15.06 -0.15 -7.08 16 5 H 0.08 1.96 7.80 -52.48 -0.41 1.55 16 6 C 0.01 0.28 4.98 -17.43 -0.09 0.19 16 7 N -0.88 -23.98 8.25 55.49 0.46 -23.52 16 8 Si 0.89 21.06 29.64 -169.99 -5.04 16.02 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 C 0.24 4.56 3.15 -69.09 -0.22 4.34 16 13 H 0.10 1.78 7.77 -51.93 -0.40 1.38 16 14 C -0.16 -2.69 8.06 37.15 0.30 -2.39 16 15 C 0.08 1.43 6.06 -35.40 -0.21 1.22 16 16 C -0.26 -4.16 10.72 -39.89 -0.43 -4.58 16 17 C -0.06 -1.04 6.20 -104.42 -0.65 -1.69 16 18 C -0.09 -1.23 9.82 36.01 0.35 -0.87 16 19 C -0.11 -2.03 7.18 -36.85 -0.26 -2.29 16 20 C 0.58 9.43 8.30 34.05 0.28 9.71 16 21 O -0.51 -8.53 15.53 -19.36 -0.30 -8.83 16 22 O -0.50 -7.09 13.44 -42.47 -0.57 -7.66 16 23 O -0.13 -2.64 8.47 4.73 0.04 -2.60 16 24 H 0.09 2.31 6.35 -51.93 -0.33 1.98 16 25 H 0.01 0.24 6.10 -51.93 -0.32 -0.08 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.42 5.88 -51.93 -0.31 0.12 16 28 H 0.08 2.23 5.96 -51.93 -0.31 1.92 16 29 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.06 1.04 6.47 -51.93 -0.34 0.71 16 31 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.13 6.45 -51.93 -0.33 0.80 16 37 H 0.41 3.33 9.11 45.56 0.42 3.75 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -30.00 305.97 -5.95 -35.95 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.00 Total: 2.65 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.75 Total: -2.44 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.05 Total: -37.71 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.83 Total: -19.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.02 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.00 -5.95 -35.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.990 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds