Wall clock time and date at job start Mon Mar 30 2020 00:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47480 * 2 1 4 4 C 1.36935 * 119.99811 * 85.73578 * 3 2 1 5 5 H 1.08006 * 119.99930 * 182.47141 * 4 3 2 6 6 C 1.38811 * 120.00313 * 2.46381 * 4 3 2 7 7 N 1.31622 * 119.99693 * 331.08400 * 6 4 3 8 8 Si 1.86800 * 120.00299 * 151.08055 * 6 4 3 9 9 H 1.48496 * 109.47133 * 94.99754 * 8 6 4 10 10 H 1.48499 * 109.47403 * 214.99960 * 8 6 4 11 11 H 1.48502 * 109.46982 * 335.00098 * 8 6 4 12 12 C 1.46505 * 120.00112 * 265.73585 * 3 2 1 13 13 H 1.08998 * 109.46630 * 174.62484 * 12 3 2 14 14 C 1.52990 * 109.47204 * 54.62518 * 12 3 2 15 15 C 1.50696 * 109.47188 * 294.62256 * 12 3 2 16 16 C 1.35165 * 125.60987 * 217.84292 * 15 12 3 17 17 C 1.40316 * 107.12433 * 179.97438 * 16 15 12 18 18 C 1.50705 * 126.64453 * 180.02562 * 17 16 15 19 19 C 1.36634 * 106.70364 * 359.97438 * 17 16 15 20 20 C 1.46471 * 125.99649 * 179.97438 * 19 17 16 21 21 O 1.21629 * 120.00003 * 359.97438 * 20 19 17 22 22 O 1.34895 * 120.00105 * 180.02562 * 20 19 17 23 23 O 1.33917 * 125.60778 * 38.07929 * 15 12 3 24 24 H 1.08998 * 109.47262 * 306.90079 * 1 2 3 25 25 H 1.09001 * 109.47140 * 66.89908 * 1 2 3 26 26 H 1.08997 * 109.47405 * 186.89794 * 1 2 3 27 27 H 1.09007 * 109.47177 * 239.99943 * 2 1 3 28 28 H 1.08999 * 109.47023 * 120.00770 * 2 1 3 29 29 H 0.97002 * 119.99566 * 179.97438 * 7 6 4 30 30 H 1.09002 * 109.47457 * 300.00056 * 14 12 3 31 31 H 1.08998 * 109.47328 * 59.99862 * 14 12 3 32 32 H 1.08994 * 109.47505 * 179.97438 * 14 12 3 33 33 H 1.07994 * 126.44114 * 359.93507 * 16 15 12 34 34 H 1.08992 * 109.47140 * 269.99498 * 18 17 16 35 35 H 1.09006 * 109.47260 * 29.99902 * 18 17 16 36 36 H 1.09002 * 109.47020 * 149.99096 * 18 17 16 37 37 H 0.96710 * 116.99723 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1635 2.0560 1.1826 5 1 2.4854 3.0870 1.1801 6 6 1.8968 1.4152 2.3847 7 7 1.0121 0.4416 2.4294 8 14 2.7933 1.9345 3.9391 9 1 1.9637 2.9144 4.6851 10 1 3.0381 0.7430 4.7909 11 1 4.0911 2.5589 3.5768 12 6 2.3515 2.0403 -1.2652 13 1 2.6032 3.0838 -1.0759 14 6 1.1499 1.9687 -2.2095 15 6 3.5299 1.3463 -1.8982 16 6 4.5343 1.9539 -2.5683 17 6 5.4177 0.9483 -2.9893 18 6 6.6900 1.1395 -3.7742 19 6 4.9016 -0.2376 -2.5487 20 6 5.4895 -1.5628 -2.7574 21 8 6.5322 -1.6754 -3.3733 22 8 4.8739 -2.6585 -2.2674 23 8 3.7520 0.0257 -1.8931 24 1 -0.3634 0.6170 0.8218 25 1 -0.3633 0.4032 -0.9453 26 1 -0.3634 -1.0202 0.1234 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.8260 -0.0064 3.2693 30 1 0.8982 0.9252 -2.3988 31 1 0.2976 2.4707 -1.7517 32 1 1.3976 2.4595 -3.1507 33 1 4.6372 3.0140 -2.7468 34 1 6.4699 1.0899 -4.8405 35 1 7.1206 2.1124 -3.5369 36 1 7.3996 0.3546 -3.5127 37 1 5.2998 -3.5113 -2.4307 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:21 Heat of formation + Delta-G solvation = -66.911128 kcal Electronic energy + Delta-G solvation = -21165.314824 eV Core-core repulsion = 17909.876565 eV Total energy + Delta-G solvation = -3255.438258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.70838 -40.96920 -38.41668 -37.30408 -35.07258 -34.51722 -32.25854 -30.77222 -30.03339 -28.82858 -26.14909 -25.00154 -23.57494 -22.73148 -21.73287 -20.31529 -19.39154 -18.68716 -18.44740 -17.59822 -17.08436 -16.24812 -16.12792 -15.76301 -15.11557 -14.89433 -14.58858 -14.14228 -14.05529 -13.92606 -13.66749 -13.62939 -13.34673 -13.18517 -12.97896 -12.77154 -12.70196 -12.51083 -12.33874 -12.22173 -11.88126 -11.78796 -11.49722 -11.22628 -10.58706 -10.30101 -9.50482 -9.00178 -7.85116 -5.10130 -0.16500 1.31741 1.46123 1.51870 1.55201 1.59612 1.82757 2.33691 2.51941 3.22888 3.57067 3.69932 3.78988 4.19696 4.31282 4.44275 4.48189 4.63009 4.68128 4.77946 4.79106 4.97591 5.00041 5.10773 5.15096 5.17462 5.23628 5.30306 5.34130 5.43585 5.55871 5.64508 5.83370 6.07212 6.20429 6.30827 6.88007 7.18229 7.87175 8.28087 9.16310 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.006222 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.297802 B = 4498.824817 C = 4591.364262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.177 3.823 3 N -0.599 5.599 4 C -0.269 4.269 5 H 0.085 0.915 6 C -0.040 4.040 7 N -0.905 5.905 8 Si 0.942 3.058 9 H -0.287 1.287 10 H -0.300 1.300 11 H -0.278 1.278 12 C 0.232 3.768 13 H 0.112 0.888 14 C -0.150 4.150 15 C 0.049 3.951 16 C -0.238 4.238 17 C -0.062 4.062 18 C -0.091 4.091 19 C -0.138 4.138 20 C 0.577 3.423 21 O -0.517 6.517 22 O -0.507 6.507 23 O -0.159 6.159 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.044 0.956 29 H 0.246 0.754 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.186 0.814 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 0.632 -12.262 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 N -0.320 5.320 4 C -0.398 4.398 5 H 0.103 0.897 6 C -0.236 4.236 7 N -0.551 5.551 8 Si 0.771 3.229 9 H -0.215 1.215 10 H -0.226 1.226 11 H -0.203 1.203 12 C 0.123 3.877 13 H 0.130 0.870 14 C -0.208 4.208 15 C -0.008 4.008 16 C -0.257 4.257 17 C -0.064 4.064 18 C -0.147 4.147 19 C -0.187 4.187 20 C 0.424 3.576 21 O -0.410 6.410 22 O -0.321 6.321 23 O -0.054 6.054 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.204 0.796 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 6.196 0.609 -12.052 13.565 hybrid contribution 0.492 -0.662 1.170 1.431 sum 6.688 -0.053 -10.882 12.773 Atomic orbital electron populations 1.22139 0.98112 0.99049 0.99515 1.20640 0.93008 0.84109 0.96993 1.44441 1.74769 1.11398 1.01353 1.19551 1.39482 0.96593 0.84140 0.89733 1.25305 0.99284 0.99204 0.99782 1.70460 1.30941 1.28405 1.25254 0.85653 0.79719 0.76576 0.80958 1.21452 1.22634 1.20315 1.19480 0.88291 0.94827 0.85059 0.87010 1.22261 0.97546 1.01845 0.99162 1.25020 0.99853 0.79932 0.95953 1.21771 0.95381 1.01948 1.06583 1.20999 0.98269 0.90034 0.97098 1.20511 0.91234 1.03879 0.99064 1.20831 0.92783 0.93611 1.11468 1.18808 0.80871 0.83005 0.74957 1.90902 1.22948 1.86408 1.40743 1.84707 1.55250 1.19020 1.73120 1.84246 1.35513 1.26549 1.59089 0.92166 0.95027 0.95692 0.95816 0.93751 0.94443 0.93619 0.91819 0.89969 0.79631 0.89212 0.88874 0.90987 0.70187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 9.18 71.98 0.66 -5.31 16 2 C 0.18 8.64 4.65 86.38 0.40 9.04 16 3 N -0.60 -28.24 2.43 -682.23 -1.66 -29.90 16 4 C -0.27 -13.93 9.68 84.03 0.81 -13.12 16 5 H 0.08 4.17 7.80 -2.91 -0.02 4.14 16 6 C -0.04 -2.15 4.98 84.86 0.42 -1.73 16 7 N -0.90 -50.62 8.25 21.65 0.18 -50.44 16 8 Si 0.94 43.95 29.64 68.60 2.03 45.99 16 9 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 C 0.23 8.59 3.15 44.24 0.14 8.73 16 13 H 0.11 3.77 7.77 -2.39 -0.02 3.75 16 14 C -0.15 -4.73 8.06 71.98 0.58 -4.15 16 15 C 0.05 1.76 6.06 24.98 0.15 1.91 16 16 C -0.24 -7.00 10.72 22.07 0.24 -6.76 16 17 C -0.06 -1.86 6.20 -19.73 -0.12 -1.98 16 18 C -0.09 -2.06 9.82 71.24 0.70 -1.36 16 19 C -0.14 -4.84 7.18 24.04 0.17 -4.67 16 20 C 0.58 18.33 8.30 69.97 0.58 18.91 16 21 O -0.52 -16.52 15.53 19.41 0.30 -16.22 16 22 O -0.51 -13.85 13.44 -56.71 -0.76 -14.61 16 23 O -0.16 -6.33 8.47 -4.91 -0.04 -6.37 16 24 H 0.06 3.16 6.35 -2.39 -0.02 3.15 16 25 H 0.03 1.29 6.10 -2.39 -0.01 1.27 16 26 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.02 1.11 5.88 -2.38 -0.01 1.10 16 28 H 0.04 2.49 5.96 -2.39 -0.01 2.48 16 29 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.04 1.55 6.47 -2.39 -0.02 1.54 16 31 H 0.06 2.07 8.09 -2.39 -0.02 2.05 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.07 1.82 6.45 -2.39 -0.02 1.80 16 37 H 0.44 6.47 9.11 -74.05 -0.67 5.80 16 Total: -1.00 -64.93 305.97 5.21 -59.72 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.42 Total: 12.32 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.74 Total: -0.48 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -1.48 Total: -80.33 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.50 Total: -37.20 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.99 kcal Total: -64.93 5.21 -59.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.194 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds