Wall clock time and date at job start Mon Mar 30 2020 00:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47043 * 2 1 4 4 C 1.36934 * 120.00288 * 276.29844 * 3 2 1 5 5 H 1.08002 * 119.99723 * 141.08538 * 4 3 2 6 6 C 1.38804 * 120.00470 * 321.08921 * 4 3 2 7 7 N 1.31615 * 120.00231 * 155.45726 * 6 4 3 8 8 Si 1.86799 * 119.99714 * 335.45614 * 6 4 3 9 9 H 1.48507 * 109.47074 * 95.22422 * 8 6 4 10 10 H 1.48497 * 109.47484 * 215.21898 * 8 6 4 11 11 H 1.48497 * 109.47277 * 335.22451 * 8 6 4 12 12 C 1.46505 * 119.99714 * 96.30360 * 3 2 1 13 13 H 1.08994 * 109.47226 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.46816 * 299.99854 * 12 3 2 15 15 C 1.50701 * 109.47082 * 59.99469 * 12 3 2 16 16 C 1.35171 * 125.60434 * 140.00160 * 15 12 3 17 17 C 1.40313 * 107.12301 * 179.72532 * 16 15 12 18 18 C 1.50703 * 126.64595 * 180.27914 * 17 16 15 19 19 C 1.36633 * 106.70142 * 0.41230 * 17 16 15 20 20 C 1.46478 * 125.99419 * 179.85172 * 19 17 16 21 21 O 1.21620 * 119.99901 * 359.71853 * 20 19 17 22 22 O 1.34899 * 119.99924 * 179.71072 * 20 19 17 23 23 O 1.33907 * 125.61503 * 319.98040 * 15 12 3 24 24 H 1.09001 * 109.46769 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47150 * 299.99530 * 1 2 3 26 26 H 1.09001 * 109.47247 * 59.99756 * 1 2 3 27 27 H 1.09008 * 109.46835 * 240.00539 * 2 1 3 28 28 H 1.08993 * 109.47318 * 120.00886 * 2 1 3 29 29 H 0.97003 * 119.99880 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47414 * 59.99980 * 14 12 3 31 31 H 1.08996 * 109.47222 * 179.97438 * 14 12 3 32 32 H 1.08997 * 109.47201 * 299.99941 * 14 12 3 33 33 H 1.08001 * 126.44027 * 0.02562 * 16 15 12 34 34 H 1.08992 * 109.47654 * 270.17909 * 18 17 16 35 35 H 1.09003 * 109.47036 * 30.18405 * 18 17 16 36 36 H 1.09004 * 109.46666 * 150.17430 * 18 17 16 37 37 H 0.96693 * 116.99605 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1239 2.0702 -1.1787 5 1 1.8626 3.1174 -1.2173 6 6 2.5666 1.4227 -2.3239 7 7 2.2314 1.8820 -3.5108 8 14 3.6381 -0.1007 -2.1803 9 1 2.7859 -1.3144 -2.2573 10 1 4.6252 -0.1179 -3.2896 11 1 4.3550 -0.0809 -0.8800 12 6 2.3938 2.0254 1.2611 13 1 2.7299 3.0431 1.0633 14 6 1.1829 2.0613 2.1957 15 6 3.5072 1.2454 1.9115 16 6 4.5736 1.7785 2.5486 17 6 5.3573 0.7091 3.0081 18 6 6.6467 0.8064 3.7821 19 6 4.7263 -0.4373 2.6152 20 6 5.1856 -1.8042 2.8725 21 8 6.2200 -1.9933 3.4836 22 8 4.4612 -2.8534 2.4318 23 8 3.6028 -0.0896 1.9538 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 2.5405 1.4293 -4.3111 30 1 0.8462 1.0437 2.3936 31 1 1.4623 2.5402 3.1341 32 1 0.3775 2.6254 1.7253 33 1 4.7807 2.8298 2.6833 34 1 7.4858 0.8416 3.0873 35 1 6.6390 1.7120 4.3886 36 1 6.7479 -0.0641 4.4303 37 1 4.8048 -3.7363 2.6253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:23 Heat of formation + Delta-G solvation = -57.265609 kcal Electronic energy + Delta-G solvation = -21371.408643 eV Core-core repulsion = 18116.388646 eV Total energy + Delta-G solvation = -3255.019997 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.44815 -39.81728 -36.88359 -36.18616 -33.87257 -32.66130 -31.45695 -29.37022 -28.69666 -27.74069 -24.54193 -23.46867 -22.40535 -21.45310 -20.47460 -18.96647 -18.23619 -17.28730 -16.81365 -16.34967 -15.51368 -15.16844 -14.89724 -14.19786 -13.77504 -13.45361 -13.20804 -13.03881 -12.91804 -12.71354 -12.45976 -12.31298 -12.16608 -12.01796 -11.69827 -11.58825 -11.56063 -10.99285 -10.76444 -10.64575 -10.49293 -10.33595 -9.80598 -9.51983 -9.39544 -8.59255 -8.20900 -7.01356 -6.12949 -3.55465 1.06396 2.56433 2.69308 3.03557 3.29749 3.42426 3.49429 3.55072 4.45703 4.77555 4.88239 4.92260 5.23356 5.28529 5.54478 5.69763 5.71364 5.74672 5.82250 5.87053 5.99970 6.07334 6.17822 6.24133 6.31714 6.36291 6.40532 6.42228 6.59156 6.66780 6.69881 6.87142 7.14558 7.28833 7.89532 7.93137 8.25279 8.83726 9.57511 9.96520 11.01100 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.007628 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.110169 B = 3669.862298 C = 3981.102310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 N -0.588 5.588 4 C -0.279 4.279 5 H 0.083 0.917 6 C 0.049 3.951 7 N -0.887 5.887 8 Si 0.872 3.128 9 H -0.283 1.283 10 H -0.300 1.300 11 H -0.267 1.267 12 C 0.232 3.768 13 H 0.108 0.892 14 C -0.160 4.160 15 C 0.070 3.930 16 C -0.250 4.250 17 C -0.061 4.061 18 C -0.095 4.095 19 C -0.113 4.113 20 C 0.574 3.426 21 O -0.508 6.508 22 O -0.505 6.505 23 O -0.138 6.138 24 H 0.037 0.963 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -3.703 13.479 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.004 3.996 3 N -0.308 5.308 4 C -0.407 4.407 5 H 0.100 0.900 6 C -0.154 4.154 7 N -0.527 5.527 8 Si 0.701 3.299 9 H -0.211 1.211 10 H -0.228 1.228 11 H -0.192 1.192 12 C 0.123 3.877 13 H 0.125 0.875 14 C -0.219 4.219 15 C 0.013 3.987 16 C -0.270 4.270 17 C -0.063 4.063 18 C -0.151 4.151 19 C -0.162 4.162 20 C 0.421 3.579 21 O -0.400 6.400 22 O -0.316 6.316 23 O -0.032 6.032 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.174 0.826 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.727 -3.600 13.196 13.947 hybrid contribution 1.071 -1.452 -0.060 1.806 sum 3.798 -5.052 13.136 14.577 Atomic orbital electron populations 1.22259 0.98347 0.99452 1.02117 1.21213 0.92950 0.85837 0.99604 1.44347 1.72300 1.11950 1.02247 1.18746 1.40906 0.96766 0.84274 0.89985 1.25474 0.97013 0.97734 0.95174 1.69884 1.43585 1.41702 0.97489 0.87020 0.81633 0.83623 0.77586 1.21061 1.22832 1.19190 1.19758 0.87492 0.94521 0.85889 0.87456 1.22351 0.98736 1.02210 0.98560 1.25052 0.99421 0.79940 0.94282 1.21441 0.97152 1.00199 1.08213 1.20552 0.97328 0.90800 0.97655 1.20440 0.92299 1.03211 0.99167 1.20278 0.93532 0.91467 1.10945 1.18928 0.80597 0.83287 0.75103 1.90913 1.23801 1.85304 1.39979 1.84729 1.54025 1.18334 1.74497 1.84258 1.36631 1.23983 1.58347 0.94398 0.93286 0.91958 0.93501 0.92918 0.92468 0.92510 0.92976 0.91116 0.82634 0.90752 0.91187 0.90010 0.72920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.01 37.16 0.37 -2.75 16 2 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 3 N -0.59 -13.30 1.94 -166.98 -0.32 -13.63 16 4 C -0.28 -7.40 9.75 -15.06 -0.15 -7.54 16 5 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 6 C 0.05 1.37 5.29 -17.44 -0.09 1.28 16 7 N -0.89 -26.27 13.97 55.49 0.78 -25.49 16 8 Si 0.87 22.56 25.27 -169.99 -4.30 18.26 16 9 H -0.28 -7.19 6.65 56.52 0.38 -6.81 16 10 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 11 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 12 C 0.23 4.32 3.17 -69.08 -0.22 4.10 16 13 H 0.11 1.92 7.88 -51.93 -0.41 1.51 16 14 C -0.16 -2.45 8.24 37.16 0.31 -2.14 16 15 C 0.07 1.31 6.05 -35.40 -0.21 1.09 16 16 C -0.25 -4.10 10.72 -39.89 -0.43 -4.53 16 17 C -0.06 -1.01 6.20 -104.42 -0.65 -1.66 16 18 C -0.09 -1.25 9.81 36.01 0.35 -0.89 16 19 C -0.11 -2.06 7.18 -36.84 -0.26 -2.32 16 20 C 0.57 9.45 8.30 34.05 0.28 9.73 16 21 O -0.51 -8.51 15.53 -19.36 -0.30 -8.81 16 22 O -0.50 -7.03 13.44 -42.48 -0.57 -7.60 16 23 O -0.14 -2.75 8.10 4.78 0.04 -2.71 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.84 6.15 -51.93 -0.32 0.53 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.05 1.14 3.37 -51.92 -0.17 0.97 16 28 H 0.05 1.10 5.56 -51.93 -0.29 0.81 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.06 0.89 6.65 -51.93 -0.35 0.54 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.10 6.45 -51.93 -0.34 0.77 16 37 H 0.41 3.26 9.11 45.56 0.42 3.68 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -32.01 306.77 -4.77 -36.78 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.00 Total: 1.42 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.72 Total: -2.85 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.45 Total: -39.12 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.83 Total: -19.12 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.30 Total: 18.26 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.01 -4.77 -36.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.481 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds