Wall clock time and date at job start Mon Mar 30 2020 00:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47043 * 2 1 4 4 C 1.36934 * 120.00288 * 276.29844 * 3 2 1 5 5 H 1.08002 * 119.99723 * 141.08538 * 4 3 2 6 6 C 1.38804 * 120.00470 * 321.08921 * 4 3 2 7 7 N 1.31615 * 120.00231 * 155.45726 * 6 4 3 8 8 Si 1.86799 * 119.99714 * 335.45614 * 6 4 3 9 9 H 1.48507 * 109.47074 * 95.22422 * 8 6 4 10 10 H 1.48497 * 109.47484 * 215.21898 * 8 6 4 11 11 H 1.48497 * 109.47277 * 335.22451 * 8 6 4 12 12 C 1.46505 * 119.99714 * 96.30360 * 3 2 1 13 13 H 1.08994 * 109.47226 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.46816 * 299.99854 * 12 3 2 15 15 C 1.50701 * 109.47082 * 59.99469 * 12 3 2 16 16 C 1.35171 * 125.60434 * 140.00160 * 15 12 3 17 17 C 1.40313 * 107.12301 * 179.72532 * 16 15 12 18 18 C 1.50703 * 126.64595 * 180.27914 * 17 16 15 19 19 C 1.36633 * 106.70142 * 0.41230 * 17 16 15 20 20 C 1.46478 * 125.99419 * 179.85172 * 19 17 16 21 21 O 1.21620 * 119.99901 * 359.71853 * 20 19 17 22 22 O 1.34899 * 119.99924 * 179.71072 * 20 19 17 23 23 O 1.33907 * 125.61503 * 319.98040 * 15 12 3 24 24 H 1.09001 * 109.46769 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47150 * 299.99530 * 1 2 3 26 26 H 1.09001 * 109.47247 * 59.99756 * 1 2 3 27 27 H 1.09008 * 109.46835 * 240.00539 * 2 1 3 28 28 H 1.08993 * 109.47318 * 120.00886 * 2 1 3 29 29 H 0.97003 * 119.99880 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.47414 * 59.99980 * 14 12 3 31 31 H 1.08996 * 109.47222 * 179.97438 * 14 12 3 32 32 H 1.08997 * 109.47201 * 299.99941 * 14 12 3 33 33 H 1.08001 * 126.44027 * 0.02562 * 16 15 12 34 34 H 1.08992 * 109.47654 * 270.17909 * 18 17 16 35 35 H 1.09003 * 109.47036 * 30.18405 * 18 17 16 36 36 H 1.09004 * 109.46666 * 150.17430 * 18 17 16 37 37 H 0.96693 * 116.99605 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1239 2.0702 -1.1787 5 1 1.8626 3.1174 -1.2173 6 6 2.5666 1.4227 -2.3239 7 7 2.2314 1.8820 -3.5108 8 14 3.6381 -0.1007 -2.1803 9 1 2.7859 -1.3144 -2.2573 10 1 4.6252 -0.1179 -3.2896 11 1 4.3550 -0.0809 -0.8800 12 6 2.3938 2.0254 1.2611 13 1 2.7299 3.0431 1.0633 14 6 1.1829 2.0613 2.1957 15 6 3.5072 1.2454 1.9115 16 6 4.5736 1.7785 2.5486 17 6 5.3573 0.7091 3.0081 18 6 6.6467 0.8064 3.7821 19 6 4.7263 -0.4373 2.6152 20 6 5.1856 -1.8042 2.8725 21 8 6.2200 -1.9933 3.4836 22 8 4.4612 -2.8534 2.4318 23 8 3.6028 -0.0896 1.9538 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 2.5405 1.4293 -4.3111 30 1 0.8462 1.0437 2.3936 31 1 1.4623 2.5402 3.1341 32 1 0.3775 2.6254 1.7253 33 1 4.7807 2.8298 2.6833 34 1 7.4858 0.8416 3.0873 35 1 6.6390 1.7120 4.3886 36 1 6.7479 -0.0641 4.4303 37 1 4.8048 -3.7363 2.6253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:23 Heat of formation + Delta-G solvation = -78.244906 kcal Electronic energy + Delta-G solvation = -21372.318374 eV Core-core repulsion = 18116.388646 eV Total energy + Delta-G solvation = -3255.929728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.79330 -41.02896 -38.55726 -37.35950 -35.14364 -34.47000 -33.18066 -30.88980 -30.21647 -28.89894 -26.15998 -25.02018 -23.95102 -22.84247 -21.92785 -20.36779 -19.46384 -18.75041 -18.53006 -17.68491 -17.42490 -16.63564 -16.22188 -15.84453 -15.08451 -14.97728 -14.70074 -14.56860 -14.23903 -14.10985 -13.83642 -13.74355 -13.66717 -13.35774 -13.27299 -13.02270 -12.75613 -12.66431 -12.44566 -12.28609 -12.01622 -11.84293 -11.71461 -11.34961 -10.68107 -10.61926 -9.56924 -8.88516 -8.27855 -5.64614 -0.23404 1.21434 1.26825 1.32733 1.45209 1.47620 1.76889 2.25603 2.35529 2.98181 3.23372 3.61014 3.72908 4.14114 4.28863 4.31216 4.39835 4.42474 4.58533 4.63434 4.72331 4.73795 4.82443 4.91718 4.99491 5.03216 5.10245 5.12947 5.21375 5.27854 5.40246 5.50216 5.54483 5.89709 5.95937 6.17697 6.81884 6.91159 7.54746 7.98939 8.90834 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.007628 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.110169 B = 3669.862298 C = 3981.102310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 N -0.601 5.601 4 C -0.255 4.255 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.932 5.932 8 Si 0.924 3.076 9 H -0.280 1.280 10 H -0.309 1.309 11 H -0.275 1.275 12 C 0.229 3.771 13 H 0.112 0.888 14 C -0.149 4.149 15 C 0.045 3.955 16 C -0.237 4.237 17 C -0.062 4.062 18 C -0.091 4.091 19 C -0.139 4.139 20 C 0.576 3.424 21 O -0.516 6.516 22 O -0.506 6.506 23 O -0.160 6.160 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.263 0.737 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.186 0.814 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.324 -3.887 15.909 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.002 3.998 3 N -0.322 5.322 4 C -0.384 4.384 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.754 3.246 9 H -0.208 1.208 10 H -0.237 1.237 11 H -0.200 1.200 12 C 0.122 3.878 13 H 0.130 0.870 14 C -0.207 4.207 15 C -0.011 4.011 16 C -0.257 4.257 17 C -0.064 4.064 18 C -0.148 4.148 19 C -0.188 4.188 20 C 0.423 3.577 21 O -0.408 6.408 22 O -0.321 6.321 23 O -0.056 6.056 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.203 0.797 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 3.242 -3.816 15.676 16.456 hybrid contribution 0.911 -1.400 -0.647 1.791 sum 4.153 -5.216 15.029 16.441 Atomic orbital electron populations 1.22160 0.96431 1.00903 1.01791 1.21221 0.94517 0.85315 0.98713 1.44388 1.73315 1.12045 1.02493 1.18699 1.38116 0.95907 0.85695 0.92114 1.25889 0.98696 0.99907 0.95201 1.69967 1.45943 1.43579 0.98037 0.86183 0.80158 0.81842 0.76390 1.20796 1.23745 1.20027 1.19874 0.89013 0.94244 0.84703 0.87026 1.22230 0.97074 1.02417 0.99006 1.24903 1.00076 0.79944 0.96175 1.21821 0.95655 1.01656 1.06524 1.21028 0.98157 0.90187 0.97041 1.20521 0.90650 1.04479 0.99106 1.20837 0.93489 0.92998 1.11455 1.18792 0.80538 0.83404 0.75001 1.90905 1.24053 1.85481 1.40380 1.84678 1.53854 1.19513 1.74032 1.84183 1.37662 1.24602 1.59155 0.92140 0.91228 0.94530 0.96260 0.91808 0.92723 0.92767 0.89945 0.91196 0.79655 0.90205 0.88313 0.90444 0.70079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 10.01 71.98 0.72 -4.99 16 2 C 0.13 5.43 4.50 86.38 0.39 5.82 16 3 N -0.60 -26.77 1.94 -682.21 -1.32 -28.09 16 4 C -0.25 -13.62 9.75 84.03 0.82 -12.81 16 5 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 6 C 0.00 0.08 5.29 84.86 0.45 0.53 16 7 N -0.93 -56.66 13.97 21.65 0.30 -56.36 16 8 Si 0.92 47.69 25.27 68.60 1.73 49.43 16 9 H -0.28 -14.13 6.65 99.48 0.66 -13.47 16 10 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 11 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 12 C 0.23 8.10 3.17 44.24 0.14 8.24 16 13 H 0.11 3.80 7.88 -2.39 -0.02 3.78 16 14 C -0.15 -4.16 8.24 71.98 0.59 -3.57 16 15 C 0.04 1.58 6.05 24.98 0.15 1.73 16 16 C -0.24 -7.07 10.72 22.07 0.24 -6.83 16 17 C -0.06 -1.88 6.20 -19.73 -0.12 -2.00 16 18 C -0.09 -2.11 9.81 71.24 0.70 -1.41 16 19 C -0.14 -4.82 7.18 24.04 0.17 -4.65 16 20 C 0.58 17.98 8.30 69.97 0.58 18.56 16 21 O -0.52 -16.30 15.53 19.44 0.30 -16.00 16 22 O -0.51 -13.17 13.44 -56.76 -0.76 -13.93 16 23 O -0.16 -6.15 8.10 -4.76 -0.04 -6.19 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 2.26 6.15 -2.39 -0.01 2.24 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.02 0.94 3.37 -2.38 -0.01 0.93 16 28 H 0.06 2.59 5.56 -2.39 -0.01 2.58 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.05 1.54 6.65 -2.38 -0.02 1.53 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.88 6.45 -2.38 -0.02 1.87 16 37 H 0.44 5.95 9.11 -74.06 -0.67 5.27 16 Total: -1.00 -69.46 306.77 5.42 -64.04 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.38 Total: 8.48 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.83 Total: -1.38 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.02 Total: -84.45 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.50 Total: -36.12 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.73 Total: 49.43 kcal Total: -69.46 5.42 -64.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.207 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds