Wall clock time and date at job start Mon Mar 30 2020 00:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47599 * 2 1 4 4 N 1.46901 * 109.47162 * 120.00718 * 2 1 3 5 5 C 1.46901 * 110.99958 * 274.99357 * 4 2 1 6 6 C 1.52997 * 109.47209 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47034 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47203 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99605 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00249 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99468 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99817 * 179.97438 * 10 8 7 13 13 H 1.48492 * 109.47004 * 60.00239 * 12 10 8 14 14 H 1.48501 * 109.46708 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47159 * 299.99909 * 12 10 8 16 16 C 1.50704 * 109.46746 * 240.00572 * 2 1 3 17 17 C 1.34149 * 125.43075 * 99.98194 * 16 2 1 18 18 C 1.47060 * 105.95419 * 180.02562 * 17 16 2 19 19 C 1.47233 * 127.20549 * 179.97438 * 18 17 16 20 20 O 1.21536 * 119.99609 * 0.02562 * 19 18 17 21 21 O 1.34770 * 119.99982 * 179.97438 * 19 18 17 22 22 C 1.36500 * 105.59616 * 0.02562 * 18 17 16 23 23 O 1.33628 * 108.38146 * 359.97438 * 22 18 17 24 24 H 1.09003 * 109.46214 * 299.99527 * 1 2 3 25 25 H 1.09001 * 109.47253 * 59.99315 * 1 2 3 26 26 H 1.08995 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.00903 * 110.99891 * 151.04562 * 4 2 1 28 28 H 1.09000 * 109.46697 * 300.00473 * 5 4 2 29 29 H 1.09004 * 109.46862 * 60.00173 * 5 4 2 30 30 H 1.09007 * 109.46905 * 300.00383 * 6 5 4 31 31 H 1.08996 * 109.47043 * 59.99908 * 6 5 4 32 32 H 1.09000 * 109.47219 * 299.99612 * 7 6 5 33 33 H 1.08996 * 109.47378 * 59.99994 * 7 6 5 34 34 H 0.97006 * 119.99625 * 180.02562 * 11 10 8 35 35 H 1.07999 * 127.02368 * 0.02562 * 17 16 2 36 36 H 0.96705 * 116.99850 * 179.97438 * 21 19 18 37 37 H 1.07997 * 125.80932 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0826 0.2223 2.3469 6 6 2.5964 -0.5332 3.5741 7 6 2.6613 0.4196 4.7693 8 6 3.1668 -0.3248 5.9783 9 1 3.4171 -1.3726 5.9016 10 6 3.3097 0.3318 7.1822 11 7 3.0044 1.6076 7.2756 12 14 3.9356 -0.5911 8.6809 13 1 5.2919 -1.1270 8.4014 14 1 3.9975 0.3335 9.8413 15 1 3.0141 -1.7135 8.9915 16 6 2.0323 -0.7103 -1.2306 17 6 2.4701 -0.1130 -2.3491 18 6 2.8514 -1.1988 -3.2646 19 6 3.3929 -1.0656 -4.6272 20 8 3.5680 0.0376 -5.1063 21 8 3.6954 -2.1668 -5.3428 22 6 2.5972 -2.3563 -2.5871 23 8 2.1120 -2.0416 -1.3825 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 2.9174 -1.1206 1.0286 28 1 2.7590 1.0459 2.1181 29 1 1.0872 0.6161 2.5526 30 1 1.9203 -1.3571 3.8028 31 1 3.5918 -0.9266 3.3680 32 1 3.3372 1.2436 4.5408 33 1 1.6658 0.8127 4.9752 34 1 3.1052 2.0696 8.1226 35 1 2.5302 0.9486 -2.5386 36 1 4.0478 -2.0290 -6.2328 37 1 2.7612 -3.3562 -2.9607 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609778769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:00 Heat of formation + Delta-G solvation = -117.244678 kcal Electronic energy + Delta-G solvation = -19175.315567 eV Core-core repulsion = 15917.694682 eV Total energy + Delta-G solvation = -3257.620885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.72872 -40.90286 -38.36247 -37.08096 -35.84957 -34.20518 -33.76145 -31.47770 -29.76669 -27.85108 -25.74763 -24.88193 -23.22756 -22.33261 -21.87549 -21.03936 -18.79918 -18.69479 -18.41467 -17.41419 -17.10369 -16.65656 -16.54733 -16.41986 -15.94502 -15.68711 -14.83416 -14.56321 -14.34819 -14.11263 -13.75548 -13.63054 -13.46046 -13.14037 -12.79394 -12.71249 -12.65780 -12.45915 -12.28956 -12.21008 -11.88272 -11.50273 -11.36786 -11.12226 -10.99772 -10.53507 -9.76103 -9.48191 -8.19029 -6.29771 0.11733 0.81770 1.40981 1.44029 1.51915 1.69917 1.98806 2.05601 2.42020 3.04224 3.14226 3.46490 3.66954 3.96432 4.16839 4.23532 4.27746 4.43143 4.49858 4.64463 4.71795 4.77919 4.87206 4.97003 5.00023 5.10335 5.16287 5.24694 5.33747 5.51862 5.53444 5.77083 5.82487 5.88010 6.03828 6.28090 6.36928 6.87237 6.94476 7.39364 8.92649 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.037520 B = 0.002737 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.093553 B =10226.611112 C =10437.268661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.162 3.838 3 H 0.082 0.918 4 N -0.683 5.683 5 C 0.071 3.929 6 C -0.092 4.092 7 C 0.025 3.975 8 C -0.544 4.544 9 H 0.059 0.941 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.964 3.036 13 H -0.267 1.267 14 H -0.283 1.283 15 H -0.267 1.267 16 C -0.008 4.008 17 C -0.165 4.165 18 C -0.264 4.264 19 C 0.564 3.436 20 O -0.555 6.555 21 O -0.502 6.502 22 C 0.086 3.914 23 O -0.163 6.163 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.346 0.654 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.049 0.951 32 H -0.009 1.009 33 H -0.007 1.007 34 H 0.263 0.737 35 H 0.162 0.838 36 H 0.436 0.564 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -8.477 -24.268 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.100 0.900 4 N -0.315 5.315 5 C -0.058 4.058 6 C -0.130 4.130 7 C -0.012 4.012 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.199 4.199 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.192 1.192 16 C -0.056 4.056 17 C -0.185 4.185 18 C -0.267 4.267 19 C 0.411 3.589 20 O -0.448 6.448 21 O -0.316 6.316 22 C 0.015 3.985 23 O -0.057 6.057 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.164 0.836 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.010 0.990 33 H 0.012 0.988 34 H 0.072 0.928 35 H 0.179 0.821 36 H 0.298 0.702 37 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -2.588 -8.544 -23.491 25.131 hybrid contribution 1.404 0.831 -0.084 1.633 sum -1.185 -7.714 -23.575 24.833 Atomic orbital electron populations 1.21825 0.92076 1.02970 1.02615 1.20244 0.97152 0.94532 0.82801 0.90029 1.60607 1.34039 1.33279 1.03611 1.21939 1.00534 0.93415 0.89916 1.21362 0.99743 0.98343 0.93569 1.18966 0.94957 0.94423 0.92898 1.21690 1.43783 0.96901 0.95833 0.92266 1.25983 0.95714 0.95782 1.02421 1.70086 1.49826 1.10702 1.26790 0.85512 0.79212 0.78375 0.78028 1.19188 1.20847 1.19165 1.22307 1.04917 0.80288 0.98129 1.22553 1.03549 1.00275 0.92094 1.20546 1.16235 0.95119 0.94803 1.19690 0.73036 0.81512 0.84702 1.90899 1.52780 1.29111 1.72051 1.84491 1.77011 1.35738 1.34369 1.25517 0.91253 1.00827 0.80880 1.83876 1.63834 1.24637 1.33378 0.91723 0.90644 0.92017 0.83580 0.95343 0.91106 0.92765 0.93245 0.99041 0.98825 0.92779 0.82055 0.70185 0.72334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.40 71.98 0.68 -2.13 16 2 C 0.16 3.61 3.06 44.17 0.14 3.75 16 3 H 0.08 1.74 7.78 -2.39 -0.02 1.72 16 4 N -0.68 -18.43 6.29 -495.44 -3.12 -21.55 16 5 C 0.07 2.30 5.48 86.30 0.47 2.78 16 6 C -0.09 -3.75 5.41 30.59 0.17 -3.58 16 7 C 0.03 1.33 4.97 29.85 0.15 1.47 16 8 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 10 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 11 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 12 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 C -0.01 -0.16 5.77 24.75 0.14 -0.02 16 17 C -0.17 -3.49 10.89 23.65 0.26 -3.23 16 18 C -0.26 -5.05 6.31 -19.00 -0.12 -5.17 16 19 C 0.56 10.83 8.33 70.19 0.58 11.41 16 20 O -0.56 -14.77 17.77 19.72 0.35 -14.42 16 21 O -0.50 -5.36 13.28 -56.81 -0.75 -6.11 16 22 C 0.09 1.23 11.94 67.41 0.80 2.04 16 23 O -0.16 -3.21 10.51 4.60 0.05 -3.16 16 24 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.35 9.05 8.35 -89.69 -0.75 8.30 16 28 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 29 H 0.07 2.32 7.44 -2.39 -0.02 2.30 16 30 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.16 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.44 0.87 9.11 -74.05 -0.67 0.19 16 37 H 0.26 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -72.85 327.34 2.47 -70.38 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -0.33 Total: 8.50 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 3.96 Total: -23.27 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.83 Total: -78.37 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.36 Total: -23.69 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -72.85 2.47 -70.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609778769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.868 kcal (2) G-P(sol) polarization free energy of solvation -72.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds