Wall clock time and date at job start Mon Mar 30 2020 00:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.08998 * 110.25440 * 40.42212 * 6 4 3 8 8 C 1.56045 * 110.28393 * 278.38818 * 6 4 3 9 9 H 1.08994 * 116.44355 * 40.18979 * 8 6 4 10 10 C 1.56079 * 103.94141 * 170.46261 * 8 6 4 11 11 C 1.56705 * 104.29102 * 66.96884 * 10 8 6 12 12 C 1.55922 * 103.62703 * 1.25125 * 11 10 8 13 13 H 1.08998 * 115.73766 * 160.17266 * 12 11 10 14 14 C 1.56906 * 101.49498 * 33.68312 * 12 11 10 15 15 N 1.47778 * 110.28949 * 162.45928 * 6 4 3 16 16 C 1.34772 * 126.66210 * 299.86083 * 15 6 4 17 17 O 1.21691 * 120.00206 * 179.97438 * 16 15 6 18 18 C 1.46378 * 119.99944 * 359.97438 * 16 15 6 19 19 H 1.08000 * 119.99696 * 0.02562 * 18 16 15 20 20 C 1.40049 * 120.00067 * 180.02562 * 18 16 15 21 21 N 1.30672 * 119.99958 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00073 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46885 * 59.99589 * 22 20 18 24 24 H 1.48495 * 109.47020 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46839 * 299.99811 * 22 20 18 26 26 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 27 27 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 29 29 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 30 30 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 31 31 H 1.09002 * 110.49605 * 185.93259 * 10 8 6 32 32 H 1.09003 * 110.50085 * 308.46574 * 10 8 6 33 33 H 1.09004 * 111.23694 * 242.59555 * 11 10 8 34 34 H 1.08995 * 110.45293 * 119.52793 * 11 10 8 35 35 H 1.08998 * 112.19540 * 61.93306 * 14 12 11 36 36 H 1.09000 * 112.19535 * 188.90911 * 14 12 11 37 37 H 0.96998 * 120.00054 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.3459 3.5833 0.6637 8 6 3.9295 3.5198 -1.4477 9 1 3.0543 3.3074 -2.0616 10 6 4.3079 5.0206 -1.2470 11 6 5.7876 4.9811 -0.7328 12 6 6.1308 3.4602 -0.7179 13 1 7.1928 3.2146 -0.7175 14 6 5.3054 2.9413 -1.9473 15 7 5.3381 2.9055 0.4171 16 6 5.8207 2.4610 1.5943 17 8 7.0178 2.4902 1.8112 18 6 4.9050 1.9431 2.6120 19 1 3.8426 1.9167 2.4193 20 6 5.4064 1.4816 3.8356 21 7 6.6918 1.5130 4.0684 22 14 4.2379 0.8200 5.1341 23 1 3.4985 -0.3457 4.5867 24 1 5.0128 0.3978 6.3283 25 1 3.2734 1.8816 5.5190 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.2429 5.5603 -2.1918 32 1 3.6606 5.4810 -0.5004 33 1 5.8683 5.3992 0.2706 34 1 6.4444 5.5126 -1.4214 35 1 5.6286 3.3981 -2.8827 36 1 5.2970 1.8530 -2.0079 37 1 7.0391 1.1938 4.9160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649115435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:40 Heat of formation + Delta-G solvation = -105.279066 kcal Electronic energy + Delta-G solvation = -21681.734097 eV Core-core repulsion = 18424.632080 eV Total energy + Delta-G solvation = -3257.102017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60265 -38.98574 -36.20787 -35.87582 -32.51630 -31.75587 -31.37995 -29.49489 -27.92518 -26.19026 -24.83874 -22.84570 -21.36434 -20.27961 -19.76677 -18.40338 -17.26022 -16.91657 -16.20375 -15.62814 -15.39575 -15.07088 -14.59302 -13.92761 -13.55691 -13.41339 -13.08602 -12.77869 -12.50215 -12.14972 -11.89593 -11.66569 -11.39606 -11.26520 -11.17462 -11.01303 -10.93864 -10.89274 -10.72456 -10.59546 -10.36686 -10.28304 -10.12026 -10.10407 -9.63424 -8.83859 -7.65995 -7.35221 -6.19752 -4.63231 2.88818 3.10286 3.16348 3.19513 3.21652 4.05266 4.36736 4.53893 4.67544 4.80018 4.97275 5.10416 5.13402 5.28026 5.39035 5.47622 5.53903 5.65075 5.70440 5.80118 5.84883 5.92509 6.00899 6.05618 6.10222 6.11988 6.21269 6.28133 6.37489 6.52948 6.67980 6.95592 7.12656 7.41574 8.04848 8.33230 8.49545 9.01699 9.43405 10.56006 10.74768 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.010379 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.770805 B = 2697.210599 C = 4290.201420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.368 6.368 4 C 0.450 3.550 5 O -0.479 6.479 6 C 0.167 3.833 7 H 0.097 0.903 8 C -0.103 4.103 9 H 0.113 0.887 10 C -0.113 4.113 11 C -0.136 4.136 12 C 0.133 3.867 13 H 0.109 0.891 14 C -0.141 4.141 15 N -0.621 5.621 16 C 0.580 3.420 17 O -0.569 6.569 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.089 3.911 21 N -0.766 5.766 22 Si 0.904 3.096 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.266 1.266 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.842 3.036 -10.375 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.285 6.285 4 C 0.289 3.711 5 O -0.363 6.363 6 C 0.058 3.942 7 H 0.114 0.886 8 C -0.121 4.121 9 H 0.131 0.869 10 C -0.150 4.150 11 C -0.175 4.175 12 C 0.029 3.971 13 H 0.127 0.873 14 C -0.179 4.179 15 N -0.361 5.361 16 C 0.388 3.612 17 O -0.451 6.451 18 C -0.566 4.566 19 H 0.078 0.922 20 C -0.131 4.131 21 N -0.395 5.395 22 Si 0.728 3.272 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.191 1.191 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.727 2.638 -9.967 14.174 hybrid contribution -0.728 -0.702 0.762 1.266 sum -10.454 1.937 -9.205 14.063 Atomic orbital electron populations 1.21777 0.93223 1.02434 1.03202 1.22884 0.94759 0.81413 1.02361 1.86489 1.25655 1.31428 1.84964 1.24535 0.79951 0.93870 0.72728 1.90661 1.60045 1.42671 1.42898 1.21341 0.87036 0.88804 0.96982 0.88571 1.23921 0.98621 0.96164 0.93414 0.86931 1.22944 0.97000 0.94349 1.00753 1.23373 0.95356 0.97313 1.01417 1.23226 0.96797 0.91506 0.85532 0.87311 1.24005 0.94860 1.01038 0.97986 1.49444 1.02644 1.68028 1.15983 1.17955 0.88358 0.76620 0.78299 1.90613 1.16509 1.59974 1.78021 1.20707 0.93106 1.43645 0.99109 0.92227 1.25662 0.95098 0.93782 0.98532 1.69992 1.12645 1.34277 1.22562 0.86490 0.80850 0.79891 0.79975 1.19325 1.20326 1.19103 0.91793 0.90766 0.91564 0.91862 0.91348 0.91472 0.91374 0.90882 0.91742 0.90331 0.90631 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.48 10.22 -39.24 -0.40 -6.88 16 4 C 0.45 9.28 5.29 36.01 0.19 9.47 16 5 O -0.48 -11.68 15.32 -18.75 -0.29 -11.97 16 6 C 0.17 3.22 2.32 -66.75 -0.15 3.06 16 7 H 0.10 1.80 7.85 -51.93 -0.41 1.40 16 8 C -0.10 -1.48 4.73 -84.95 -0.40 -1.88 16 9 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 10 C -0.11 -1.46 6.28 -23.08 -0.15 -1.60 16 11 C -0.14 -2.12 6.52 -23.17 -0.15 -2.27 16 12 C 0.13 2.56 5.02 -62.79 -0.32 2.25 16 13 H 0.11 2.24 8.05 -51.93 -0.42 1.83 16 14 C -0.14 -2.20 6.53 -22.23 -0.15 -2.34 16 15 N -0.62 -14.58 2.38 -152.68 -0.36 -14.94 16 16 C 0.58 17.15 7.31 -12.99 -0.09 17.05 16 17 O -0.57 -18.97 15.35 5.20 0.08 -18.89 16 18 C -0.53 -15.55 8.28 -35.63 -0.30 -15.85 16 19 H 0.06 1.66 6.26 -52.49 -0.33 1.33 16 20 C 0.09 2.58 5.50 -17.37 -0.10 2.48 16 21 N -0.77 -23.57 11.83 55.55 0.66 -22.91 16 22 Si 0.90 21.00 29.56 -169.99 -5.02 15.98 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 30 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.34 7.78 -51.93 -0.40 0.94 16 37 H 0.27 7.53 8.29 -40.82 -0.34 7.19 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -36.74 307.74 -7.03 -43.77 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.33 Total: 0.94 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -1.00 Total: 10.28 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.29 Total: -37.86 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.61 Total: -37.75 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.74 -7.03 -43.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649115435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.512 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds