Wall clock time and date at job start Mon Mar 30 2020 00:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.08998 * 110.25440 * 40.42212 * 6 4 3 8 8 C 1.56045 * 110.28393 * 278.38818 * 6 4 3 9 9 H 1.08994 * 116.44355 * 40.18979 * 8 6 4 10 10 C 1.56079 * 103.94141 * 170.46261 * 8 6 4 11 11 C 1.56705 * 104.29102 * 66.96884 * 10 8 6 12 12 C 1.55922 * 103.62703 * 1.25125 * 11 10 8 13 13 H 1.08998 * 115.73766 * 160.17266 * 12 11 10 14 14 C 1.56906 * 101.49498 * 33.68312 * 12 11 10 15 15 N 1.47778 * 110.28949 * 162.45928 * 6 4 3 16 16 C 1.34772 * 126.66210 * 299.86083 * 15 6 4 17 17 O 1.21691 * 120.00206 * 179.97438 * 16 15 6 18 18 C 1.46378 * 119.99944 * 359.97438 * 16 15 6 19 19 H 1.08000 * 119.99696 * 0.02562 * 18 16 15 20 20 C 1.40049 * 120.00067 * 180.02562 * 18 16 15 21 21 N 1.30672 * 119.99958 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00073 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46885 * 59.99589 * 22 20 18 24 24 H 1.48495 * 109.47020 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46839 * 299.99811 * 22 20 18 26 26 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 27 27 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 29 29 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 30 30 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 31 31 H 1.09002 * 110.49605 * 185.93259 * 10 8 6 32 32 H 1.09003 * 110.50085 * 308.46574 * 10 8 6 33 33 H 1.09004 * 111.23694 * 242.59555 * 11 10 8 34 34 H 1.08995 * 110.45293 * 119.52793 * 11 10 8 35 35 H 1.08998 * 112.19540 * 61.93306 * 14 12 11 36 36 H 1.09000 * 112.19535 * 188.90911 * 14 12 11 37 37 H 0.96998 * 120.00054 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.3459 3.5833 0.6637 8 6 3.9295 3.5198 -1.4477 9 1 3.0543 3.3074 -2.0616 10 6 4.3079 5.0206 -1.2470 11 6 5.7876 4.9811 -0.7328 12 6 6.1308 3.4602 -0.7179 13 1 7.1928 3.2146 -0.7175 14 6 5.3054 2.9413 -1.9473 15 7 5.3381 2.9055 0.4171 16 6 5.8207 2.4610 1.5943 17 8 7.0178 2.4902 1.8112 18 6 4.9050 1.9431 2.6120 19 1 3.8426 1.9167 2.4193 20 6 5.4064 1.4816 3.8356 21 7 6.6918 1.5130 4.0684 22 14 4.2379 0.8200 5.1341 23 1 3.4985 -0.3457 4.5867 24 1 5.0128 0.3978 6.3283 25 1 3.2734 1.8816 5.5190 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 4.2429 5.5603 -2.1918 32 1 3.6606 5.4810 -0.5004 33 1 5.8683 5.3992 0.2706 34 1 6.4444 5.5126 -1.4214 35 1 5.6286 3.3981 -2.8827 36 1 5.2970 1.8530 -2.0079 37 1 7.0391 1.1938 4.9160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649115435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:39 Heat of formation + Delta-G solvation = -130.650727 kcal Electronic energy + Delta-G solvation = -21682.834294 eV Core-core repulsion = 18424.632080 eV Total energy + Delta-G solvation = -3258.202215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.14374 -40.49834 -38.33209 -37.46336 -34.73562 -33.35574 -32.66332 -30.92279 -29.33074 -28.21743 -26.32247 -24.13021 -22.99201 -21.79351 -21.14723 -20.08042 -18.97764 -18.56881 -17.92228 -17.48143 -16.93310 -16.51119 -16.33669 -15.45061 -15.12625 -14.93705 -14.72061 -14.24125 -13.89607 -13.72552 -13.54472 -13.14580 -12.88152 -12.82577 -12.61245 -12.47858 -12.44600 -12.39098 -12.19769 -12.10557 -12.04875 -11.94460 -11.48035 -11.46389 -11.17819 -10.99895 -9.94574 -9.23828 -8.37437 -6.91652 1.26092 1.28381 1.31306 1.42555 1.68054 2.14014 2.40354 2.65224 3.37629 3.45770 3.52100 3.77949 3.87891 4.01499 4.12192 4.15162 4.25379 4.36619 4.46521 4.52880 4.63203 4.78017 4.84814 4.91368 4.95854 5.00446 5.02430 5.14548 5.16601 5.19432 5.31183 5.40483 5.47163 5.53868 5.88870 6.30717 6.77899 6.88336 7.37871 8.37132 8.58535 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.010379 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.770805 B = 2697.210599 C = 4290.201420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.359 6.359 4 C 0.452 3.548 5 O -0.528 6.528 6 C 0.152 3.848 7 H 0.102 0.898 8 C -0.079 4.079 9 H 0.154 0.846 10 C -0.100 4.100 11 C -0.129 4.129 12 C 0.106 3.894 13 H 0.076 0.924 14 C -0.127 4.127 15 N -0.631 5.631 16 C 0.564 3.436 17 O -0.628 6.628 18 C -0.554 4.554 19 H 0.067 0.933 20 C 0.029 3.971 21 N -0.818 5.818 22 Si 0.986 3.014 23 H -0.263 1.263 24 H -0.265 1.265 25 H -0.245 1.245 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.336 4.076 -12.031 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 O -0.275 6.275 4 C 0.294 3.706 5 O -0.416 6.416 6 C 0.045 3.955 7 H 0.120 0.880 8 C -0.098 4.098 9 H 0.171 0.829 10 C -0.137 4.137 11 C -0.167 4.167 12 C 0.003 3.997 13 H 0.094 0.906 14 C -0.165 4.165 15 N -0.369 5.369 16 C 0.372 3.628 17 O -0.515 6.515 18 C -0.590 4.590 19 H 0.086 0.914 20 C -0.186 4.186 21 N -0.447 5.447 22 Si 0.804 3.196 23 H -0.188 1.188 24 H -0.189 1.189 25 H -0.169 1.169 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.288 3.719 -11.685 18.081 hybrid contribution 0.359 -1.045 1.191 1.624 sum -12.929 2.673 -10.494 16.865 Atomic orbital electron populations 1.21795 0.89377 1.04372 1.04037 1.23242 0.97675 0.79871 1.01604 1.86482 1.23745 1.33161 1.84156 1.24779 0.80624 0.93795 0.71385 1.90648 1.61339 1.44186 1.45380 1.21806 0.84418 0.88593 1.00684 0.88033 1.24128 0.99178 0.96630 0.89820 0.82891 1.22959 0.94201 0.93421 1.03095 1.23305 0.98630 0.93999 1.00786 1.23580 0.95537 0.94647 0.85963 0.90603 1.23945 0.94892 0.99648 0.97983 1.49110 1.05486 1.66805 1.15495 1.18201 0.87757 0.76593 0.80295 1.90543 1.18567 1.62339 1.80055 1.21104 0.93521 1.44289 1.00105 0.91446 1.26915 0.97113 0.93482 1.01120 1.70160 1.15322 1.35562 1.23705 0.85261 0.78340 0.79497 0.76477 1.18790 1.18887 1.16896 0.90075 0.88280 0.91553 0.91339 0.93619 0.86800 0.90767 0.94095 0.88551 0.85771 0.93446 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.43 6.19 71.98 0.45 1.88 16 3 O -0.36 -12.15 10.22 -51.34 -0.52 -12.67 16 4 C 0.45 18.66 5.29 71.24 0.38 19.03 16 5 O -0.53 -26.66 15.32 21.95 0.34 -26.32 16 6 C 0.15 5.78 2.32 45.06 0.10 5.89 16 7 H 0.10 3.73 7.85 -2.39 -0.02 3.71 16 8 C -0.08 -2.00 4.73 -7.12 -0.03 -2.03 16 9 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 10 C -0.10 -2.12 6.28 32.96 0.21 -1.91 16 11 C -0.13 -3.82 6.52 32.90 0.21 -3.60 16 12 C 0.11 4.14 5.02 46.86 0.24 4.38 16 13 H 0.08 3.38 8.05 -2.39 -0.02 3.37 16 14 C -0.13 -3.70 6.53 33.51 0.22 -3.49 16 15 N -0.63 -30.79 2.38 -755.19 -1.80 -32.59 16 16 C 0.56 35.37 7.31 86.36 0.63 36.00 16 17 O -0.63 -44.99 15.35 -4.32 -0.07 -45.05 16 18 C -0.55 -33.93 8.28 24.83 0.21 -33.72 16 19 H 0.07 3.86 6.26 -2.91 -0.02 3.84 16 20 C 0.03 1.72 5.50 85.30 0.47 2.19 16 21 N -0.82 -52.83 11.83 21.84 0.26 -52.57 16 22 Si 0.99 43.88 29.56 68.60 2.03 45.90 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.56 7.88 -2.39 -0.02 1.54 16 33 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 1.67 7.78 -2.39 -0.02 1.65 16 37 H 0.28 16.09 8.29 -92.71 -0.77 15.32 16 Total: -1.00 -89.01 307.74 5.11 -83.90 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.06 Total: 16.61 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 3.82 Total: 22.79 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.54 Total: -85.16 kcal Atomic # 8 Polarization: -83.79 SS G_CDS: -0.25 Total: -84.05 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -89.01 5.11 -83.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649115435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.751 kcal (2) G-P(sol) polarization free energy of solvation -89.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds