Wall clock time and date at job start Mon Mar 30 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.50693 * 109.47300 * 239.99650 * 2 1 3 5 5 H 1.08006 * 120.00121 * 240.00818 * 4 2 1 6 6 C 1.37872 * 120.00048 * 60.00232 * 4 2 1 7 7 N 1.31520 * 120.00052 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00084 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47343 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47409 * 119.99947 * 8 6 4 11 11 H 1.48503 * 109.46937 * 239.99834 * 8 6 4 12 12 C 1.53003 * 109.46757 * 119.99518 * 2 1 3 13 13 N 1.46896 * 109.47579 * 300.00202 * 12 2 1 14 14 C 1.46894 * 111.00221 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47069 * 179.97438 * 14 13 12 16 16 C 1.35225 * 125.63490 * 90.00001 * 15 14 13 17 17 C 1.40286 * 107.09902 * 180.02562 * 16 15 14 18 18 C 1.36445 * 106.72567 * 359.97438 * 17 16 15 19 Xx 1.57005 * 125.97330 * 179.74015 * 18 17 16 20 19 O 1.42004 * 119.99755 * 0.02562 * 19 18 17 21 20 O 1.41994 * 120.00417 * 180.02562 * 19 18 17 22 21 O 1.33878 * 125.63596 * 269.99487 * 15 14 13 23 22 H 1.09002 * 109.46840 * 300.00669 * 1 2 3 24 23 H 1.09004 * 109.46644 * 59.99891 * 1 2 3 25 24 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 26 25 H 1.09004 * 109.46736 * 179.97438 * 3 2 1 27 26 H 1.08998 * 109.47123 * 299.99008 * 3 2 1 28 27 H 1.08993 * 109.47344 * 59.99666 * 3 2 1 29 28 H 0.96998 * 119.99926 * 179.97438 * 7 6 4 30 29 H 1.09004 * 109.47038 * 179.97438 * 12 2 1 31 30 H 1.09007 * 109.47013 * 59.99983 * 12 2 1 32 31 H 1.00898 * 111.00230 * 56.04179 * 13 12 2 33 32 H 1.08997 * 109.47656 * 60.00040 * 14 13 12 34 33 H 1.09001 * 109.47131 * 299.99675 * 14 13 12 35 34 H 1.08005 * 126.44830 * 0.03268 * 16 15 14 36 35 H 1.08002 * 126.63896 * 180.02562 * 17 16 15 37 36 H 0.96694 * 114.00041 * 180.02562 * 20 19 18 38 37 H 0.96693 * 114.00116 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6036 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1876 -4.8163 12 6 2.0399 -0.7212 1.2494 13 7 1.5503 -0.0287 2.4487 14 6 2.0217 -0.6944 3.6704 15 6 1.5010 0.0430 4.8771 16 6 0.3315 -0.2060 5.5085 17 6 0.2358 0.7026 6.5730 18 6 1.3643 1.4687 6.5380 19 8 0.8227 2.9725 8.5767 20 8 2.9335 3.3532 7.3731 21 8 2.1200 1.0528 5.5013 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 0.7089 1.1611 -3.4844 29 1 3.1300 -0.7216 1.2492 30 1 1.6765 -1.7489 1.2494 31 1 0.5438 0.0415 2.4402 32 1 3.1115 -0.6938 3.6871 33 1 1.6586 -1.7220 3.6874 34 1 -0.3926 -0.9623 5.2433 35 1 -0.5740 0.7802 7.2834 36 1 1.1259 3.7029 9.1330 37 1 3.0636 4.0519 8.0288 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585045721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:09 Heat of formation + Delta-G solvation = 125.473339 kcal Electronic energy + Delta-G solvation = -18560.311799 eV Core-core repulsion = 15427.786358 eV Total energy + Delta-G solvation = -3132.525441 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 256.138 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -41.21875 -38.72961 -35.82456 -33.42423 -31.82759 -29.80360 -29.20559 -28.93289 -28.07127 -27.09683 -25.41137 -23.36004 -20.58674 -20.36504 -19.31388 -18.38157 -17.22400 -16.05186 -15.38508 -14.97110 -14.58497 -14.43635 -13.75462 -13.59953 -13.27999 -13.11846 -12.95842 -12.71479 -12.47767 -12.37489 -11.94357 -11.86895 -11.75919 -11.68852 -11.60104 -11.24397 -11.02728 -10.88164 -10.69737 -10.60639 -8.98609 -8.95506 -8.33311 -8.02940 -7.64787 -7.19526 -7.17079 -6.11860 -3.98386 -0.62026 1.73544 1.76771 1.99170 2.43290 2.59184 2.74868 3.78671 4.24242 4.52672 4.60447 4.72629 4.90312 5.00061 5.29593 5.36977 5.57180 5.63090 5.68585 5.73408 5.82284 5.92212 5.94911 5.97273 6.05425 6.12914 6.31697 6.46452 6.57079 6.66786 6.83812 6.96368 7.09021 7.41869 7.48563 7.68666 8.47737 9.38567 9.70378 Molecular weight = 256.14amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.003612 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.189839 B = 7749.959232 C = 7919.911632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.023 4.023 3 C -0.128 4.128 4 C -0.078 4.078 5 H 0.129 0.871 6 C -0.069 4.069 7 N -0.596 5.596 8 Si 0.950 3.050 9 H -0.243 1.243 10 H -0.251 1.251 11 H -0.250 1.250 12 C 0.064 3.936 13 N -0.682 5.682 14 C 0.152 3.848 15 C -0.080 4.080 16 C -0.189 4.189 17 C -0.267 4.267 18 C 0.236 3.764 19 O -0.782 6.782 20 O -0.714 6.714 21 O -0.178 6.178 22 H 0.061 0.939 23 H 0.084 0.916 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.327 0.673 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.345 0.655 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.280 0.720 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -12.268 -25.662 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 C -0.185 4.185 4 C -0.097 4.097 5 H 0.146 0.854 6 C -0.281 4.281 7 N -0.245 5.245 8 Si 0.768 3.232 9 H -0.166 1.166 10 H -0.175 1.175 11 H -0.174 1.174 12 C -0.066 4.066 13 N -0.315 5.315 14 C 0.024 3.976 15 C -0.129 4.129 16 C -0.209 4.209 17 C -0.287 4.287 18 C 0.161 3.839 19 O -0.601 6.601 20 O -0.533 6.533 21 O -0.074 6.074 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.140 0.860 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.165 0.835 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.110 0.890 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.022 -12.675 -26.665 29.524 hybrid contribution -0.436 -0.084 0.433 0.620 sum -0.414 -12.759 -26.232 29.173 Atomic orbital electron populations 1.22034 0.92741 1.01220 1.03816 1.19657 0.95893 0.96278 0.90535 1.21895 1.00041 0.93037 1.03568 1.25476 0.94501 0.96728 0.93038 0.85369 1.26712 0.99095 0.98303 1.03944 1.69961 1.11534 1.11200 1.31824 0.85377 0.80755 0.80305 0.76741 1.16561 1.17496 1.17391 1.22118 1.00443 0.94553 0.89456 1.60436 1.17044 1.53698 1.00370 1.20068 1.00628 0.92664 0.84246 1.22101 0.95720 0.95583 0.99476 1.21236 0.98354 1.02925 0.98431 1.21663 1.01240 1.00897 1.04897 1.39695 0.82519 0.83294 0.78355 1.93730 1.60181 1.52460 1.53776 1.93619 1.52730 1.51434 1.55480 1.84188 1.46702 1.39905 1.36643 0.92009 0.89764 0.93688 0.93645 0.90725 0.91024 0.85971 0.90727 0.95249 0.83479 0.89831 0.92970 0.84425 0.83931 0.89015 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 125. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.92 37.16 0.29 -1.16 16 2 C -0.02 -0.23 0.57 -155.66 -0.09 -0.32 16 3 C -0.13 -1.55 8.09 37.16 0.30 -1.25 16 4 C -0.08 -0.64 8.01 -34.45 -0.28 -0.92 16 5 H 0.13 0.75 7.74 -52.48 -0.41 0.34 16 6 C -0.07 -0.55 5.15 -17.82 -0.09 -0.64 16 7 N -0.60 -5.28 9.35 55.43 0.52 -4.76 16 8 Si 0.95 5.83 29.54 -169.99 -5.02 0.80 16 9 H -0.24 -1.52 7.11 56.52 0.40 -1.12 16 10 H -0.25 -1.71 7.11 56.52 0.40 -1.31 16 11 H -0.25 -1.76 7.11 56.52 0.40 -1.36 16 12 C 0.06 0.68 4.59 -3.82 -0.02 0.67 16 13 N -0.68 -9.65 5.70 -115.06 -0.66 -10.30 16 14 C 0.15 2.38 6.21 -4.98 -0.03 2.35 16 15 C -0.08 -1.71 6.83 -35.38 -0.24 -1.95 16 16 C -0.19 -3.99 10.77 -39.89 -0.43 -4.42 16 17 C -0.27 -6.96 10.86 -39.46 -0.43 -7.39 16 18 C 0.24 7.22 11.48 30.09 0.35 7.57 16 19 O -0.78 -27.93 17.71 -57.73 -1.02 -28.95 16 20 O -0.71 -25.26 17.78 -57.73 -1.03 -26.29 16 21 O -0.18 -4.90 10.66 5.26 0.06 -4.85 16 22 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 23 H 0.08 0.90 6.07 -51.93 -0.32 0.58 16 24 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.89 6.07 -51.93 -0.32 0.57 16 27 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 28 H 0.33 2.28 8.31 -40.82 -0.34 1.94 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.35 4.76 6.76 -39.29 -0.27 4.50 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.14 2.32 8.06 -52.48 -0.42 1.89 16 35 H 0.14 3.64 8.06 -52.49 -0.42 3.22 16 36 H 0.28 8.99 8.90 45.56 0.41 9.40 16 37 H 0.29 9.12 8.90 45.56 0.41 9.53 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -39.61 324.46 -6.67 -46.28 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -3.74 Total: 30.63 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.66 Total: -7.45 kcal Atomic # 7 Polarization: -14.93 SS G_CDS: -0.14 Total: -15.06 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -1.99 Total: -60.08 kcal Atomic # 14 Polarization: 5.83 SS G_CDS: -5.02 Total: 0.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -39.61 -6.67 -46.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585045721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.749 kcal (2) G-P(sol) polarization free energy of solvation -39.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds