Wall clock time and date at job start Mon Mar 30 2020 00:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47081 * 2 1 4 4 C 1.50693 * 109.47300 * 239.99650 * 2 1 3 5 5 H 1.08006 * 120.00121 * 240.00818 * 4 2 1 6 6 C 1.37872 * 120.00048 * 60.00232 * 4 2 1 7 7 N 1.31520 * 120.00052 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00084 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47343 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47409 * 119.99947 * 8 6 4 11 11 H 1.48503 * 109.46937 * 239.99834 * 8 6 4 12 12 C 1.53003 * 109.46757 * 119.99518 * 2 1 3 13 13 N 1.46896 * 109.47579 * 300.00202 * 12 2 1 14 14 C 1.46894 * 111.00221 * 180.02562 * 13 12 2 15 15 C 1.50700 * 109.47069 * 179.97438 * 14 13 12 16 16 C 1.35225 * 125.63490 * 90.00001 * 15 14 13 17 17 C 1.40286 * 107.09902 * 180.02562 * 16 15 14 18 18 C 1.36445 * 106.72567 * 359.97438 * 17 16 15 19 Xx 1.57005 * 125.97330 * 179.74015 * 18 17 16 20 19 O 1.42004 * 119.99755 * 0.02562 * 19 18 17 21 20 O 1.41994 * 120.00417 * 180.02562 * 19 18 17 22 21 O 1.33878 * 125.63596 * 269.99487 * 15 14 13 23 22 H 1.09002 * 109.46840 * 300.00669 * 1 2 3 24 23 H 1.09004 * 109.46644 * 59.99891 * 1 2 3 25 24 H 1.08995 * 109.47403 * 179.97438 * 1 2 3 26 25 H 1.09004 * 109.46736 * 179.97438 * 3 2 1 27 26 H 1.08998 * 109.47123 * 299.99008 * 3 2 1 28 27 H 1.08993 * 109.47344 * 59.99666 * 3 2 1 29 28 H 0.96998 * 119.99926 * 179.97438 * 7 6 4 30 29 H 1.09004 * 109.47038 * 179.97438 * 12 2 1 31 30 H 1.09007 * 109.47013 * 59.99983 * 12 2 1 32 31 H 1.00898 * 111.00230 * 56.04179 * 13 12 2 33 32 H 1.08997 * 109.47656 * 60.00040 * 14 13 12 34 33 H 1.09001 * 109.47131 * 299.99675 * 14 13 12 35 34 H 1.08005 * 126.44830 * 0.03268 * 16 15 14 36 35 H 1.08002 * 126.63896 * 180.02562 * 17 16 15 37 36 H 0.96694 * 114.00041 * 180.02562 * 20 19 18 38 37 H 0.96693 * 114.00116 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1466 -2.2872 -3.6036 10 1 1.1663 -1.5869 -4.8160 11 1 3.1468 -0.1876 -4.8163 12 6 2.0399 -0.7212 1.2494 13 7 1.5503 -0.0287 2.4487 14 6 2.0217 -0.6944 3.6704 15 6 1.5010 0.0430 4.8771 16 6 0.3315 -0.2060 5.5085 17 6 0.2358 0.7026 6.5730 18 6 1.3643 1.4687 6.5380 19 8 0.8227 2.9725 8.5767 20 8 2.9335 3.3532 7.3731 21 8 2.1200 1.0528 5.5013 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8901 27 1 1.6767 1.9563 0.8899 28 1 0.7089 1.1611 -3.4844 29 1 3.1300 -0.7216 1.2492 30 1 1.6765 -1.7489 1.2494 31 1 0.5438 0.0415 2.4402 32 1 3.1115 -0.6938 3.6871 33 1 1.6586 -1.7220 3.6874 34 1 -0.3926 -0.9623 5.2433 35 1 -0.5740 0.7802 7.2834 36 1 1.1259 3.7029 9.1330 37 1 3.0636 4.0519 8.0288 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585045721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:08 Heat of formation + Delta-G solvation = 85.864524 kcal Electronic energy + Delta-G solvation = -18562.029366 eV Core-core repulsion = 15427.786358 eV Total energy + Delta-G solvation = -3134.243008 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 256.138 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.63124 -40.78733 -37.67311 -35.21923 -33.37172 -30.81670 -30.63918 -30.02624 -29.95067 -28.53989 -26.87217 -24.79637 -22.40087 -21.90109 -20.89714 -20.40120 -18.82463 -17.50267 -16.88977 -16.40385 -16.15331 -15.81236 -15.18859 -14.97500 -14.70156 -14.60955 -14.43751 -14.24893 -13.82152 -13.50769 -13.38420 -13.14678 -13.12921 -12.82944 -12.74570 -12.42562 -12.26121 -12.17661 -12.10382 -11.95289 -11.06288 -10.58151 -9.41289 -8.82765 -8.72268 -8.68209 -8.39674 -7.77648 -4.68156 -3.11807 0.17242 0.42515 1.30609 1.52998 1.74712 1.97489 2.12237 2.20981 2.31691 2.86197 3.07300 3.33477 3.39431 3.50744 3.62424 3.78625 4.02631 4.29043 4.43145 4.51562 4.53667 4.63951 4.65126 4.68121 4.76663 4.79945 4.98050 5.20486 5.23331 5.35168 5.41385 5.44093 5.88293 6.08052 6.38694 7.08269 8.13191 8.38336 Molecular weight = 256.14amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.003612 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.189839 B = 7749.959232 C = 7919.911632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.424 3.576 5 H 0.274 0.726 6 C -0.163 4.163 7 N -0.393 5.393 8 Si 1.029 2.971 9 H -0.191 1.191 10 H -0.247 1.247 11 H -0.254 1.254 12 C 0.043 3.957 13 N -0.708 5.708 14 C 0.174 3.826 15 C -0.115 4.115 16 C -0.190 4.190 17 C -0.342 4.342 18 C 0.092 3.908 19 O -1.110 7.110 20 O -1.021 7.021 21 O -0.219 6.219 22 H 0.063 0.937 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.396 0.604 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.349 0.651 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.095 0.905 36 H 0.194 0.806 37 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -30.487 -73.627 79.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.196 4.196 4 C 0.396 3.604 5 H 0.290 0.710 6 C -0.383 4.383 7 N -0.023 5.023 8 Si 0.838 3.162 9 H -0.111 1.111 10 H -0.170 1.170 11 H -0.178 1.178 12 C -0.085 4.085 13 N -0.342 5.342 14 C 0.046 3.954 15 C -0.161 4.161 16 C -0.210 4.210 17 C -0.362 4.362 18 C 0.035 3.965 19 O -0.934 6.934 20 O -0.844 6.844 21 O -0.117 6.117 22 H 0.082 0.918 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.097 0.903 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.219 0.781 29 H 0.127 0.873 30 H 0.112 0.888 31 H 0.169 0.831 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.205 0.795 35 H 0.114 0.886 36 H 0.019 0.981 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.679 -30.911 -74.914 81.043 hybrid contribution -1.123 1.318 1.909 2.577 sum -0.445 -29.594 -73.005 78.776 Atomic orbital electron populations 1.22406 0.87298 1.05451 1.05636 1.21280 0.99061 0.97867 0.92565 1.22231 1.02650 0.89869 1.04828 1.30370 0.56078 0.82104 0.91890 0.71038 1.29240 1.01396 1.00127 1.07567 1.70060 0.90193 1.01463 1.40544 0.84288 0.81132 0.80307 0.70446 1.11084 1.16991 1.17770 1.22580 1.02982 0.96613 0.86328 1.60163 1.17669 1.55388 1.01017 1.20162 1.00449 0.93131 0.81628 1.24217 0.95550 0.95206 1.01167 1.21606 1.00261 1.02546 0.96590 1.22340 1.01345 1.04875 1.07613 1.47450 0.85976 0.85845 0.77191 1.94057 1.85179 1.47150 1.66992 1.93923 1.83827 1.51370 1.55286 1.84697 1.48791 1.41104 1.37099 0.91827 0.88351 0.88260 0.90252 0.88784 0.92374 0.78131 0.87301 0.88821 0.83078 0.89531 0.88287 0.79489 0.88644 0.98095 0.96185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 1.41 7.92 71.98 0.57 1.98 16 2 C -0.11 1.31 0.57 -52.93 -0.03 1.28 16 3 C -0.14 0.44 8.09 71.98 0.58 1.02 16 4 C 0.42 -11.81 8.01 25.60 0.21 -11.61 16 5 H 0.27 -11.26 7.74 -2.91 -0.02 -11.28 16 6 C -0.16 4.32 5.15 84.65 0.44 4.76 16 7 N -0.39 8.39 9.35 21.45 0.20 8.59 16 8 Si 1.03 -25.98 29.54 68.60 2.03 -23.95 16 9 H -0.19 5.22 7.11 99.48 0.71 5.93 16 10 H -0.25 5.05 7.11 99.48 0.71 5.76 16 11 H -0.25 4.85 7.11 99.48 0.71 5.56 16 12 C 0.04 -0.21 4.59 86.31 0.40 0.19 16 13 N -0.71 -11.59 5.70 -517.94 -2.95 -14.55 16 14 C 0.17 4.83 6.21 85.56 0.53 5.37 16 15 C -0.11 -6.22 6.83 24.99 0.17 -6.05 16 16 C -0.19 -10.86 10.77 22.07 0.24 -10.62 16 17 C -0.34 -27.70 10.86 22.35 0.24 -27.46 16 18 C 0.09 8.84 11.48 67.40 0.77 9.62 16 19 O -1.11 -138.59 17.71 -127.47 -2.26 -140.85 16 20 O -1.02 -123.75 17.78 -127.47 -2.27 -126.01 16 21 O -0.22 -17.33 10.66 -4.09 -0.04 -17.37 16 22 H 0.06 0.07 6.57 -2.39 -0.02 0.06 16 23 H 0.10 -1.18 6.07 -2.38 -0.01 -1.20 16 24 H 0.10 -1.45 8.14 -2.39 -0.02 -1.47 16 25 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.09 -0.70 6.07 -2.39 -0.01 -0.72 16 27 H 0.06 0.62 7.60 -2.39 -0.02 0.60 16 28 H 0.40 -9.82 8.31 -92.71 -0.77 -10.59 16 29 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H 0.09 -1.20 8.14 -2.38 -0.02 -1.22 16 31 H 0.35 5.72 6.76 -89.70 -0.61 5.11 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.19 7.72 8.06 -2.91 -0.02 7.69 16 35 H 0.10 8.04 8.06 -2.91 -0.02 8.01 16 36 H 0.19 23.66 8.90 -74.06 -0.66 23.00 16 37 H 0.21 24.96 8.90 -74.06 -0.66 24.30 16 Total: -1.00 -281.25 324.46 -2.00 -283.25 By element: Atomic # 1 Polarization: 63.24 SS G_CDS: -0.82 Total: 62.42 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.12 Total: -31.52 kcal Atomic # 7 Polarization: -3.21 SS G_CDS: -2.75 Total: -5.96 kcal Atomic # 8 Polarization: -279.67 SS G_CDS: -4.57 Total: -284.24 kcal Atomic # 14 Polarization: -25.98 SS G_CDS: 2.03 Total: -23.95 kcal Total: -281.25 -2.00 -283.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585045721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 369.112 kcal (2) G-P(sol) polarization free energy of solvation -281.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -283.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds