Wall clock time and date at job start Mon Mar 30 2020 01:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29949 * 126.28498 * 2 1 4 4 O 1.21306 * 110.24681 * 179.72309 * 3 2 1 5 5 C 1.33643 * 109.80874 * 0.46985 * 4 3 2 6 6 C 1.50701 * 126.54735 * 179.79699 * 5 4 3 7 7 C 1.53002 * 109.47387 * 269.69248 * 6 5 4 8 8 C 1.52993 * 109.47066 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46949 * 180.02562 * 8 7 6 10 10 O 1.21281 * 120.00311 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99965 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00067 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46943 * 34.99959 * 12 11 9 14 14 C 1.53000 * 109.47074 * 275.00178 * 12 11 9 15 15 C 1.50696 * 109.46871 * 154.99639 * 12 11 9 16 16 H 1.07999 * 120.00319 * 0.02562 * 15 12 11 17 17 C 1.37885 * 119.99717 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 N 1.31123 * 106.90269 * 359.53958 * 5 4 3 24 24 H 1.09000 * 109.47171 * 269.97291 * 1 2 3 25 25 H 1.08998 * 109.47226 * 29.97584 * 1 2 3 26 26 H 1.08998 * 109.46749 * 149.97264 * 1 2 3 27 27 H 1.08996 * 109.47308 * 149.68755 * 6 5 4 28 28 H 1.09007 * 109.47045 * 29.69525 * 6 5 4 29 29 H 1.08994 * 109.47218 * 60.00046 * 7 6 5 30 30 H 1.08997 * 109.46782 * 299.99891 * 7 6 5 31 31 H 1.08996 * 109.47709 * 59.99459 * 8 7 6 32 32 H 1.09005 * 109.47272 * 299.99589 * 8 7 6 33 33 H 0.97000 * 119.99961 * 359.97438 * 11 9 8 34 34 H 1.08997 * 109.46749 * 299.99711 * 14 12 11 35 35 H 1.08996 * 109.47024 * 59.99854 * 14 12 11 36 36 H 1.08998 * 109.46637 * 179.97438 * 14 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0055 5 6 3.5298 -0.6212 -0.0007 6 6 4.7969 -1.4370 -0.0012 7 6 5.2254 -1.7127 -1.4439 8 6 6.5114 -2.5415 -1.4444 9 6 6.9338 -2.8125 -2.8654 10 8 6.2711 -2.3853 -3.7870 11 7 8.0479 -3.5297 -3.1121 12 6 8.4582 -3.7937 -4.4936 13 1 8.2116 -2.9338 -5.1165 14 6 7.7235 -5.0297 -5.0165 15 6 9.9448 -4.0364 -4.5383 16 1 10.5259 -3.9983 -3.6287 17 6 10.5632 -4.3071 -5.7406 18 7 11.8606 -4.5195 -5.7796 19 14 9.5583 -4.3723 -7.3139 20 1 9.0739 -5.7585 -7.5349 21 1 8.3966 -3.4545 -7.1977 22 1 10.4057 -3.9555 -8.4600 23 7 2.3031 -1.0841 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5143 27 1 4.6209 -2.3820 0.5124 28 1 5.5844 -0.8855 0.5126 29 1 5.4016 -0.7676 -1.9575 30 1 4.4380 -2.2642 -1.9576 31 1 6.3350 -3.4865 -0.9309 32 1 7.2991 -1.9903 -0.9306 33 1 8.5781 -3.8711 -2.3751 34 1 7.9702 -5.8894 -4.3936 35 1 6.6483 -4.8540 -4.9840 36 1 8.0285 -5.2257 -6.0444 37 1 12.2955 -4.7103 -6.6254 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:07 Heat of formation + Delta-G solvation = 15.650736 kcal Electronic energy + Delta-G solvation = -19459.663772 eV Core-core repulsion = 16240.098416 eV Total energy + Delta-G solvation = -3219.565356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.77338 -39.19012 -36.40872 -35.69141 -34.86577 -32.69147 -32.34186 -30.20696 -29.46012 -28.03584 -25.20610 -24.06144 -23.08314 -21.41091 -20.79200 -19.58803 -18.27900 -17.71942 -17.19757 -16.06356 -15.81052 -15.48199 -15.22590 -14.42039 -14.10245 -13.90172 -13.80826 -13.25322 -13.17375 -12.99455 -12.68472 -12.53568 -12.20802 -12.09544 -11.78232 -11.64983 -11.46734 -11.23752 -11.22563 -10.87921 -10.82130 -10.19894 -10.06788 -9.72329 -9.24282 -9.15508 -8.76858 -8.16500 -6.22299 -4.24798 0.93611 1.99899 2.59442 3.21216 3.23954 3.34876 3.39421 3.40277 3.80555 3.93838 4.30765 4.58505 4.73780 4.80584 4.98941 5.04424 5.11757 5.12794 5.21523 5.32970 5.40076 5.46664 5.62228 5.71187 5.77624 5.97936 6.16006 6.30386 6.37243 6.55505 6.85144 7.18324 7.28594 7.51363 7.96209 8.13874 8.52021 8.74620 8.93298 9.38875 10.89871 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.044470 B = 0.003038 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.485029 B = 9214.843660 C = 9456.856066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.389 5.389 4 O 0.076 5.924 5 C 0.193 3.807 6 C -0.030 4.030 7 C -0.101 4.101 8 C -0.140 4.140 9 C 0.501 3.499 10 O -0.558 6.558 11 N -0.702 5.702 12 C 0.235 3.765 13 H 0.048 0.952 14 C -0.161 4.161 15 C -0.535 4.535 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.893 5.893 19 Si 0.886 3.114 20 H -0.276 1.276 21 H -0.262 1.262 22 H -0.294 1.294 23 N -0.484 5.484 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.396 0.604 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.507 5.360 14.108 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.099 5.099 4 O 0.019 5.981 5 C -0.027 4.027 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.180 4.180 9 C 0.286 3.714 10 O -0.438 6.438 11 N -0.350 5.350 12 C 0.132 3.868 13 H 0.066 0.934 14 C -0.219 4.219 15 C -0.573 4.573 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.187 1.187 22 H -0.222 1.222 23 N -0.219 5.219 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.229 0.771 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.439 6.129 13.317 22.783 hybrid contribution 0.074 -0.388 -0.558 0.683 sum -17.366 5.741 12.760 22.301 Atomic orbital electron populations 1.20130 0.83022 1.04720 1.04172 1.25921 1.00625 0.83613 1.00538 1.74636 0.89454 1.23998 1.21789 1.85294 1.22291 1.24905 1.65655 1.28871 0.97098 0.82100 0.94642 1.20388 0.87808 0.98195 1.00487 1.21313 0.97631 1.01963 0.93073 1.21619 0.98424 1.02017 0.95929 1.20468 0.81427 0.78699 0.90783 1.90665 1.54114 1.52450 1.46535 1.46206 1.25138 1.53041 1.10641 1.19093 0.94738 0.93954 0.79032 0.93441 1.22446 0.98624 1.00500 1.00346 1.21048 0.89838 1.50223 0.96187 0.90187 1.24843 0.94858 0.94018 0.98885 1.69870 1.08985 1.47262 1.26843 0.86870 0.80062 0.78777 0.82740 1.20311 1.18676 1.22164 1.71914 0.99792 1.29362 1.20799 0.89402 0.89546 0.88997 0.86992 0.87662 0.90275 0.90204 0.88797 0.88652 0.77103 0.92821 0.94583 0.93505 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.17 1.91 8.22 -156.37 -1.28 0.62 16 3 N -0.39 -4.97 12.16 30.90 0.38 -4.59 16 4 O 0.08 0.91 11.31 18.10 0.20 1.12 16 5 C 0.19 2.08 7.77 -13.06 -0.10 1.98 16 6 C -0.03 -0.23 5.84 -27.88 -0.16 -0.39 16 7 C -0.10 -1.07 4.49 -26.73 -0.12 -1.19 16 8 C -0.14 -1.50 5.70 -27.89 -0.16 -1.65 16 9 C 0.50 8.67 7.79 -10.98 -0.09 8.59 16 10 O -0.56 -12.05 15.64 5.56 0.09 -11.96 16 11 N -0.70 -13.18 5.07 -54.93 -0.28 -13.46 16 12 C 0.24 5.52 2.15 -69.08 -0.15 5.37 16 13 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 14 C -0.16 -3.56 8.97 37.16 0.33 -3.23 16 15 C -0.54 -14.26 9.31 -34.44 -0.32 -14.58 16 16 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 17 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 18 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 19 Si 0.89 21.71 24.37 -169.99 -4.14 17.57 16 20 H -0.28 -6.55 6.87 56.52 0.39 -6.17 16 21 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 N -0.48 -5.89 11.55 -9.87 -0.11 -6.01 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.40 6.35 8.54 -40.82 -0.35 6.00 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 1.08 3.28 -51.93 -0.17 0.91 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -34.08 314.97 -5.23 -39.31 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.11 Total: 1.25 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.77 Total: -2.48 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.76 Total: -49.54 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.29 Total: -10.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.08 -5.23 -39.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.957 kcal (2) G-P(sol) polarization free energy of solvation -34.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds