Wall clock time and date at job start Mon Mar 30 2020 01:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40946 * 126.73356 * 2 1 4 4 C 1.36528 * 103.91692 * 180.02562 * 3 2 1 5 5 N 1.38734 * 126.87563 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99413 * 179.97438 * 5 4 3 7 7 O 1.21269 * 120.00439 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99609 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.46726 * 46.51450 * 8 6 5 10 10 C 1.53000 * 109.47157 * 286.51733 * 8 6 5 11 11 N 1.46897 * 109.47176 * 166.51403 * 8 6 5 12 12 C 1.46897 * 111.00091 * 196.06030 * 11 8 6 13 13 C 1.46894 * 110.99988 * 72.10230 * 11 8 6 14 14 C 1.50703 * 109.47621 * 190.00183 * 13 11 8 15 15 H 1.08009 * 119.99310 * 0.02562 * 14 13 11 16 16 C 1.37876 * 120.00570 * 180.02562 * 14 13 11 17 17 N 1.31509 * 119.99862 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47199 * 89.99968 * 18 16 14 20 20 H 1.48497 * 109.47094 * 209.99799 * 18 16 14 21 21 H 1.48503 * 109.47330 * 329.99701 * 18 16 14 22 22 O 1.34248 * 106.24282 * 0.23926 * 4 3 2 23 23 N 1.20904 * 111.48190 * 359.56683 * 22 4 3 24 24 H 1.08997 * 109.47253 * 90.00058 * 1 2 3 25 25 H 1.08991 * 109.47210 * 210.00247 * 1 2 3 26 26 H 1.09006 * 109.46969 * 330.00365 * 1 2 3 27 27 H 1.07998 * 128.04440 * 359.97438 * 3 2 1 28 28 H 0.96993 * 120.00121 * 359.97438 * 5 4 3 29 29 H 1.09000 * 109.46849 * 179.97438 * 10 8 6 30 30 H 1.08999 * 109.47509 * 59.99788 * 10 8 6 31 31 H 1.09002 * 109.46914 * 299.99998 * 10 8 6 32 32 H 1.09006 * 109.47305 * 55.33249 * 12 11 8 33 33 H 1.09000 * 109.47202 * 175.33143 * 12 11 8 34 34 H 1.08999 * 109.47337 * 295.33378 * 12 11 8 35 35 H 1.08996 * 109.47693 * 310.00333 * 13 11 8 36 36 H 1.09003 * 109.47109 * 70.00110 * 13 11 8 37 37 H 0.96997 * 120.00101 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3500 1.1296 0.0000 4 6 3.6085 0.6001 -0.0006 5 7 4.8062 1.3003 -0.0013 6 6 5.9770 0.6325 -0.0013 7 8 5.9835 -0.5802 -0.0002 8 6 7.2781 1.3930 -0.0027 9 1 7.2352 2.1876 0.7422 10 6 7.5107 2.0032 -1.3864 11 7 8.3806 0.4777 0.3205 12 6 9.5884 1.2221 0.7014 13 6 8.6545 -0.4327 -0.7993 14 6 9.6113 -1.5072 -0.3509 15 1 9.9788 -1.5134 0.6647 16 6 10.0176 -2.4823 -1.2370 17 7 9.5697 -2.4750 -2.4734 18 14 11.2041 -3.8136 -0.6812 19 1 10.4378 -4.9681 -0.1471 20 1 12.0267 -4.2568 -1.8353 21 1 12.0911 -3.2744 0.3808 22 8 3.4548 -0.7335 -0.0063 23 7 2.2865 -1.0446 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 2.0665 2.1717 -0.0004 28 1 4.8010 2.2702 -0.0018 29 1 8.4516 2.5535 -1.3872 30 1 6.6927 2.6823 -1.6262 31 1 7.5535 1.2086 -2.1313 32 1 9.3544 1.8977 1.5243 33 1 10.3628 0.5221 1.0151 34 1 9.9441 1.7988 -0.1523 35 1 7.7230 -0.8912 -1.1311 36 1 9.0973 0.1274 -1.6230 37 1 9.8552 -3.1612 -3.0967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177189116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:26 Heat of formation + Delta-G solvation = 42.990396 kcal Electronic energy + Delta-G solvation = -20560.998261 eV Core-core repulsion = 17342.618441 eV Total energy + Delta-G solvation = -3218.379820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.74689 -40.01323 -36.82820 -35.24108 -34.59642 -32.63773 -30.99101 -29.59543 -28.69245 -27.23917 -25.37754 -24.07211 -23.19555 -22.15843 -20.14569 -19.36186 -18.05963 -17.56114 -16.90008 -16.45154 -15.85539 -15.03266 -14.59881 -14.40783 -14.06614 -13.66820 -13.58743 -13.43734 -13.05336 -12.86161 -12.73967 -12.36041 -12.01510 -11.86791 -11.60128 -11.13659 -11.10334 -10.98333 -10.86999 -10.53864 -10.40778 -9.98060 -9.90705 -9.53722 -9.02310 -8.42244 -8.30769 -7.31345 -5.93059 -3.92449 1.50595 2.22508 2.29376 2.98418 3.39306 3.45193 3.47445 3.56015 4.18532 4.49521 4.71549 4.88456 4.92539 5.04576 5.27624 5.30131 5.33596 5.35629 5.44021 5.48037 5.66443 5.76931 5.88325 6.00315 6.05243 6.24277 6.31223 6.41877 6.66887 7.05402 7.32562 7.33003 7.84108 8.13110 8.19116 8.26192 8.46753 8.58874 9.12848 9.69843 11.18459 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023634 B = 0.004814 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.455147 B = 5814.912822 C = 6614.730037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.033 3.967 3 C -0.292 4.292 4 C 0.232 3.768 5 N -0.637 5.637 6 C 0.504 3.496 7 O -0.446 6.446 8 C 0.073 3.927 9 H 0.096 0.904 10 C -0.182 4.182 11 N -0.523 5.523 12 C 0.039 3.961 13 C 0.186 3.814 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.274 1.274 22 O 0.114 5.886 23 N -0.372 5.372 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.171 0.829 28 H 0.427 0.573 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.017 0.983 35 H 0.051 0.949 36 H -0.007 1.007 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 14.285 4.072 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 C -0.320 4.320 4 C 0.070 3.930 5 N -0.293 5.293 6 C 0.290 3.710 7 O -0.311 6.311 8 C -0.040 4.040 9 H 0.114 0.886 10 C -0.241 4.241 11 N -0.247 5.247 12 C -0.109 4.109 13 C 0.061 3.939 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.214 1.214 21 H -0.199 1.199 22 O 0.054 5.946 23 N -0.082 5.082 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.189 0.811 28 H 0.266 0.734 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.011 0.989 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.356 11.610 4.314 18.214 hybrid contribution 0.845 1.131 -0.531 1.509 sum -12.510 12.741 3.782 18.252 Atomic orbital electron populations 1.20130 0.86038 1.03574 1.03241 1.23161 0.98696 0.88603 1.02078 1.21705 0.89024 1.01079 1.20163 1.20951 0.88376 0.84750 0.98884 1.43229 1.01694 1.10235 1.74135 1.21430 0.84546 0.89172 0.75828 1.90894 1.85611 1.13291 1.41291 1.21491 0.90469 0.94425 0.97630 0.88621 1.22419 1.02193 1.01730 0.97746 1.62128 1.04461 1.16003 1.42133 1.22252 0.93368 0.97288 0.98042 1.19979 0.98032 0.89985 0.85862 1.21108 1.25617 1.10090 0.97294 0.92067 1.24943 0.96833 0.97878 0.94898 1.69951 1.44823 1.34790 1.04311 0.86520 0.80800 0.82242 0.77955 1.20634 1.21419 1.19944 1.85185 1.21382 1.19668 1.68351 1.73965 0.88621 1.23152 1.22488 0.90257 0.90627 0.90159 0.81107 0.73367 0.91123 0.92666 0.90399 0.93585 0.90218 0.96426 0.93067 0.98937 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.47 36.01 0.38 -0.24 16 2 C 0.03 0.43 7.31 -82.20 -0.60 -0.17 16 3 C -0.29 -3.38 11.15 -39.17 -0.44 -3.82 16 4 C 0.23 3.42 7.92 -15.05 -0.12 3.30 16 5 N -0.64 -8.23 5.39 -11.78 -0.06 -8.29 16 6 C 0.50 8.92 6.89 -10.98 -0.08 8.84 16 7 O -0.45 -10.56 13.20 -15.83 -0.21 -10.77 16 8 C 0.07 1.18 2.70 -68.86 -0.19 0.99 16 9 H 0.10 1.16 7.89 -51.93 -0.41 0.76 16 10 C -0.18 -2.64 8.32 37.16 0.31 -2.33 16 11 N -0.52 -11.09 4.44 -237.73 -1.06 -12.15 16 12 C 0.04 0.70 9.12 60.06 0.55 1.25 16 13 C 0.19 4.90 3.22 -4.98 -0.02 4.88 16 14 C -0.50 -14.60 8.52 -34.44 -0.29 -14.90 16 15 H 0.06 1.76 7.10 -52.48 -0.37 1.38 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 18 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 O 0.11 2.14 9.63 -4.77 -0.05 2.09 16 23 N -0.37 -6.41 12.06 33.48 0.40 -6.01 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.43 3.37 8.82 -40.82 -0.36 3.01 16 29 H 0.07 0.98 7.05 -51.93 -0.37 0.61 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.42 6.53 -51.93 -0.34 1.08 16 32 H 0.05 0.67 7.99 -51.93 -0.41 0.25 16 33 H 0.08 1.59 6.88 -51.93 -0.36 1.23 16 34 H 0.02 0.30 7.07 -51.93 -0.37 -0.07 16 35 H 0.05 1.52 5.93 -51.93 -0.31 1.21 16 36 H -0.01 -0.19 6.85 -51.93 -0.36 -0.55 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 310.98 15.07 4.69 4.69 Total: -1.00 -36.50 310.98 -6.06 -42.55 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.90 Total: -2.02 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.59 Total: -0.65 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.02 Total: -53.37 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.26 Total: -8.68 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.50 -6.06 -42.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177189116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.543 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds