Wall clock time and date at job start Mon Mar 30 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40952 * 126.73497 * 2 1 4 4 C 1.36519 * 103.92409 * 180.12230 * 3 2 1 5 5 N 1.38731 * 126.88289 * 179.90734 * 4 3 2 6 6 C 1.34777 * 119.99911 * 179.97438 * 5 4 3 7 7 O 1.21273 * 119.99997 * 359.71874 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72539 * 6 5 4 9 9 N 1.46899 * 109.46987 * 179.97438 * 8 6 5 10 10 C 1.46903 * 110.99879 * 293.94909 * 9 8 6 11 11 C 1.46896 * 111.00331 * 169.99914 * 9 8 6 12 12 H 1.09000 * 109.46945 * 309.99895 * 11 9 8 13 13 C 1.52998 * 109.47157 * 69.99694 * 11 9 8 14 14 C 1.50701 * 109.47377 * 189.99925 * 11 9 8 15 15 H 1.07999 * 119.99940 * 359.97438 * 14 11 9 16 16 C 1.37885 * 119.99918 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00142 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99680 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46935 * 90.00272 * 18 16 14 20 20 H 1.48493 * 109.47155 * 209.99776 * 18 16 14 21 21 H 1.48500 * 109.47506 * 330.00084 * 18 16 14 22 22 O 1.34252 * 106.23958 * 359.64143 * 4 3 2 23 23 N 1.20897 * 111.48674 * 0.24620 * 22 4 3 24 24 H 1.09001 * 109.47678 * 270.25765 * 1 2 3 25 25 H 1.09000 * 109.47188 * 30.26332 * 1 2 3 26 26 H 1.09003 * 109.46895 * 150.26170 * 1 2 3 27 27 H 1.07998 * 128.03791 * 0.02562 * 3 2 1 28 28 H 0.97001 * 119.99543 * 359.70296 * 5 4 3 29 29 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 30 30 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 31 31 H 1.09001 * 109.46920 * 60.00315 * 10 9 8 32 32 H 1.09001 * 109.47382 * 180.02562 * 10 9 8 33 33 H 1.09000 * 109.47175 * 300.00357 * 10 9 8 34 34 H 1.09005 * 109.47083 * 180.02562 * 13 11 9 35 35 H 1.09002 * 109.47047 * 299.99859 * 13 11 9 36 36 H 1.08994 * 109.47451 * 60.00186 * 13 11 9 37 37 H 0.96999 * 120.00274 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3500 1.1296 0.0000 4 6 3.6084 0.6003 -0.0028 5 7 4.8061 1.3004 -0.0058 6 6 5.9769 0.6327 -0.0078 7 8 5.9834 -0.5800 -0.0020 8 6 7.2779 1.3933 -0.0173 9 7 8.3995 0.4447 -0.0172 10 6 8.4474 -0.3138 1.2399 11 6 9.6726 1.1347 -0.2643 12 1 9.5754 1.7730 -1.1425 13 6 10.0329 1.9912 0.9512 14 6 10.7582 0.1166 -0.5010 15 1 10.5257 -0.9376 -0.4705 16 6 12.0482 0.5310 -0.7566 17 7 12.3313 1.8148 -0.7933 18 14 13.3939 -0.7310 -1.0493 19 1 13.4719 -1.0443 -2.4988 20 1 14.6953 -0.1823 -0.5908 21 1 13.0843 -1.9698 -0.2911 22 8 3.4548 -0.7334 0.0038 23 7 2.2865 -1.0446 0.0052 24 1 -0.3634 0.0046 1.0276 25 1 -0.3633 0.8876 -0.5179 26 1 -0.3633 -0.8924 -0.5098 27 1 2.0663 2.1717 0.0004 28 1 4.8008 2.2704 -0.0103 29 1 7.3283 2.0159 -0.9106 30 1 7.3363 2.0245 0.8693 31 1 7.5186 -0.8708 1.3637 32 1 9.2871 -1.0083 1.2136 33 1 8.5720 0.3750 2.0754 34 1 10.9773 2.5035 0.7676 35 1 9.2477 2.7276 1.1223 36 1 10.1301 1.3530 1.8294 37 1 13.2388 2.1064 -0.9735 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268309775.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:08 Heat of formation + Delta-G solvation = 20.103850 kcal Electronic energy + Delta-G solvation = -20211.298785 eV Core-core repulsion = 16991.926530 eV Total energy + Delta-G solvation = -3219.372255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.86442 -41.24100 -38.57102 -36.55671 -35.64714 -34.71458 -31.91431 -30.75851 -29.53795 -28.92120 -27.24592 -25.94671 -24.26747 -23.24496 -21.17004 -20.84182 -19.20730 -18.72958 -18.55087 -17.94531 -17.05764 -16.76966 -16.56370 -15.93367 -15.67564 -14.99417 -14.59815 -14.44531 -14.27093 -14.13358 -13.95829 -13.51310 -13.46173 -12.93553 -12.91099 -12.64842 -12.56423 -12.51017 -12.17432 -12.10587 -12.04005 -11.92169 -11.14519 -10.98004 -10.85557 -10.47118 -9.55628 -8.88369 -8.10844 -6.19530 0.31656 1.19664 1.21378 1.42338 1.44074 1.53849 1.68683 2.35800 2.46291 3.18934 3.28661 3.40823 3.69473 3.94910 4.03455 4.32137 4.40914 4.48743 4.58285 4.70449 4.74747 4.78630 4.84977 4.92578 4.94425 5.13066 5.13589 5.25867 5.34216 5.52132 5.71790 5.81439 6.02774 6.20612 6.44929 6.67400 6.89835 6.94034 7.35028 7.49115 8.94861 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.050820 B = 0.003557 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.829331 B = 7869.250958 C = 8160.339536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.036 3.964 3 C -0.260 4.260 4 C 0.202 3.798 5 N -0.612 5.612 6 C 0.512 3.488 7 O -0.521 6.521 8 C 0.042 3.958 9 N -0.541 5.541 10 C 0.040 3.960 11 C 0.218 3.782 12 H 0.022 0.978 13 C -0.161 4.161 14 C -0.517 4.517 15 H 0.047 0.953 16 C 0.017 3.983 17 N -0.915 5.915 18 Si 0.952 3.048 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.275 1.275 22 O 0.064 5.936 23 N -0.413 5.413 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.073 0.927 27 H 0.217 0.783 28 H 0.453 0.547 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.026 0.974 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.030 0.970 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.740 6.374 3.148 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 C -0.286 4.286 4 C 0.041 3.959 5 N -0.270 5.270 6 C 0.300 3.700 7 O -0.393 6.393 8 C -0.089 4.089 9 N -0.265 5.265 10 C -0.108 4.108 11 C 0.111 3.889 12 H 0.040 0.960 13 C -0.220 4.220 14 C -0.556 4.556 15 H 0.065 0.935 16 C -0.181 4.181 17 N -0.555 5.555 18 Si 0.779 3.221 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.200 1.200 22 O 0.010 5.990 23 N -0.130 5.130 24 H 0.113 0.887 25 H 0.129 0.871 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.297 0.703 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.712 3.966 2.745 21.266 hybrid contribution 1.317 0.974 0.385 1.682 sum -19.395 4.940 3.129 20.257 Atomic orbital electron populations 1.20366 0.82969 1.05063 1.04687 1.24036 1.00635 0.88156 0.99399 1.22324 0.87157 1.02770 1.16306 1.21354 0.89569 0.84154 1.00795 1.42810 1.00295 1.11365 1.72530 1.21569 0.85802 0.88369 0.74246 1.90770 1.86930 1.15791 1.45855 1.21997 0.87169 0.94410 1.05323 1.61891 1.03569 1.26064 1.34946 1.22235 1.01402 0.97646 0.89556 1.19131 0.84535 0.91799 0.93396 0.96042 1.22235 1.01916 0.99125 0.98770 1.21356 0.93434 0.93203 1.47609 0.93468 1.25543 1.00338 0.96952 0.95306 1.69960 1.20535 1.14678 1.50369 0.85645 0.78759 0.79429 0.78305 1.20422 1.20607 1.20011 1.85084 1.22273 1.21644 1.69988 1.73985 0.88756 1.25143 1.25106 0.88657 0.87077 0.90833 0.76606 0.70254 0.85807 0.89160 0.91937 0.93130 0.95518 0.91782 0.94136 0.95097 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.47 71.23 0.75 -0.11 16 2 C 0.04 0.76 7.31 43.44 0.32 1.08 16 3 C -0.26 -4.49 11.15 22.53 0.25 -4.24 16 4 C 0.20 4.97 7.92 83.20 0.66 5.63 16 5 N -0.61 -12.74 5.39 -419.70 -2.26 -15.00 16 6 C 0.51 15.49 7.51 87.66 0.66 16.15 16 7 O -0.52 -21.22 13.15 17.45 0.23 -20.99 16 8 C 0.04 1.27 5.02 85.56 0.43 1.70 16 9 N -0.54 -22.78 4.44 -906.05 -4.02 -26.80 16 10 C 0.04 1.63 8.34 127.69 1.06 2.70 16 11 C 0.22 10.48 2.31 44.17 0.10 10.58 16 12 H 0.02 1.11 7.93 -2.39 -0.02 1.10 16 13 C -0.16 -7.15 8.22 71.98 0.59 -6.56 16 14 C -0.52 -28.48 7.91 25.60 0.20 -28.28 16 15 H 0.05 2.70 7.12 -2.91 -0.02 2.68 16 16 C 0.02 0.95 5.30 84.66 0.45 1.40 16 17 N -0.92 -50.93 11.32 21.45 0.24 -50.69 16 18 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 O 0.06 2.16 9.63 90.10 0.87 3.03 16 23 N -0.41 -12.61 12.06 -49.00 -0.59 -13.20 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.22 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.45 4.72 8.82 -92.71 -0.82 3.90 16 29 H 0.12 3.25 7.93 -2.39 -0.02 3.23 16 30 H 0.09 2.25 7.06 -2.39 -0.02 2.24 16 31 H 0.06 2.54 5.88 -2.39 -0.01 2.53 16 32 H 0.05 2.29 6.76 -2.39 -0.02 2.27 16 33 H 0.03 1.00 6.46 -2.39 -0.02 0.98 16 34 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 35 H 0.04 1.47 6.91 -2.39 -0.02 1.46 16 36 H 0.03 1.35 6.42 -2.39 -0.02 1.34 16 37 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -73.59 306.46 2.24 -71.35 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.28 Total: 6.19 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 5.47 Total: 0.06 kcal Atomic # 7 Polarization: -99.06 SS G_CDS: -6.63 Total: -105.69 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 1.10 Total: -17.97 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -73.59 2.24 -71.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268309775.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.452 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds