Wall clock time and date at job start Mon Mar 30 2020 01:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 H 1.09000 * 109.47174 * 330.00433 * 3 2 1 5 5 C 1.53000 * 109.46996 * 90.00183 * 3 2 1 6 6 C 1.50704 * 109.47017 * 210.00165 * 3 2 1 7 7 O 1.21291 * 120.00163 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99453 * 180.02562 * 6 3 2 9 9 C 1.40156 * 119.99285 * 179.97438 * 8 6 3 10 10 C 1.40409 * 125.97687 * 359.71398 * 9 8 6 11 11 C 1.35239 * 107.86810 * 179.82764 * 10 9 8 12 12 C 1.50702 * 126.07090 * 180.17698 * 11 10 9 13 13 N 1.34966 * 107.86373 * 0.42991 * 11 10 9 14 14 C 1.46500 * 125.97841 * 179.69318 * 13 11 10 15 15 C 1.50700 * 109.46815 * 270.01481 * 14 13 11 16 16 H 1.08001 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99809 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99628 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47256 * 59.99847 * 19 17 15 21 21 H 1.48506 * 109.47003 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47079 * 299.99360 * 19 17 15 23 23 N 1.31220 * 125.97263 * 180.02562 * 9 8 6 24 24 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 26 26 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 27 27 H 1.09008 * 109.47142 * 59.99497 * 5 3 2 28 28 H 1.08992 * 109.47123 * 179.97438 * 5 3 2 29 29 H 1.09000 * 109.47214 * 300.00331 * 5 3 2 30 30 H 0.96991 * 120.00449 * 359.97438 * 8 6 3 31 31 H 1.08002 * 126.06781 * 359.97438 * 10 9 8 32 32 H 1.08990 * 109.47324 * 270.29531 * 12 11 10 33 33 H 1.08997 * 109.46891 * 30.29760 * 12 11 10 34 34 H 1.09002 * 109.47065 * 150.29352 * 12 11 10 35 35 H 1.08992 * 109.47254 * 30.01746 * 14 13 11 36 36 H 1.09008 * 109.46928 * 150.01607 * 14 13 11 37 37 H 0.97009 * 119.99481 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3386 1.2640 -0.7105 7 8 3.7476 0.2191 -1.1710 8 7 4.0725 2.3877 -0.8331 9 6 5.3082 2.3490 -1.4934 10 6 5.9018 1.2130 -2.0666 11 6 7.0827 1.5900 -2.6072 12 6 8.0540 0.6931 -3.3307 13 7 7.2397 2.9109 -2.3789 14 6 8.3859 3.7252 -2.7903 15 6 9.4268 3.7143 -1.7006 16 1 9.2517 3.1570 -0.7922 17 6 10.6021 4.4168 -1.8628 18 7 10.8149 5.0959 -2.9687 19 14 11.8926 4.4028 -0.5123 20 1 12.3392 3.0076 -0.2689 21 1 13.0544 5.2283 -0.9293 22 1 11.3103 4.9609 0.7346 23 7 6.1153 3.3668 -1.6789 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.8829 1.0774 1.9564 28 1 2.6613 2.7669 1.4425 29 1 1.2568 1.8014 1.9564 30 1 3.7456 3.2232 -0.4645 31 1 5.4876 0.2156 -2.0764 32 1 8.7575 0.2674 -2.6154 33 1 7.5077 -0.1101 -3.8252 34 1 8.5992 1.2735 -4.0750 35 1 8.8134 3.3150 -3.7052 36 1 8.0583 4.7493 -2.9697 37 1 11.6419 5.5898 -3.0830 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271154900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:07 Heat of formation + Delta-G solvation = -26.774129 kcal Electronic energy + Delta-G solvation = -20027.947955 eV Core-core repulsion = 16806.542918 eV Total energy + Delta-G solvation = -3221.405036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.35253 -40.92455 -38.63739 -36.36139 -35.35631 -33.44150 -32.71245 -32.06556 -28.62959 -27.90389 -27.66963 -25.79724 -24.62071 -22.52826 -21.31725 -20.71911 -18.81159 -18.27207 -18.06752 -17.45401 -17.02761 -16.60591 -16.16785 -16.09879 -15.80737 -15.42625 -14.77059 -14.37257 -14.27747 -13.85113 -13.80742 -13.59444 -13.53366 -13.31262 -13.14078 -12.85714 -12.74033 -12.66080 -12.24028 -12.12901 -12.09971 -11.56654 -11.38240 -11.01615 -10.73604 -10.54881 -9.61475 -9.17401 -8.33146 -6.50784 0.86656 1.19893 1.36526 1.39929 1.40131 1.49684 2.12556 2.17883 2.36128 2.96022 2.97345 3.45266 3.84870 3.90195 4.01231 4.14041 4.41780 4.49811 4.59528 4.67409 4.70236 4.74755 4.80643 4.88065 4.90739 4.96360 4.98732 5.12018 5.20747 5.22513 5.53213 5.80465 5.89717 6.03346 6.23827 6.29787 6.60904 6.95018 7.07956 7.20139 8.72845 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033409 B = 0.003879 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.892587 B = 7217.420609 C = 7579.793087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.394 6.394 3 C 0.085 3.915 4 H 0.128 0.872 5 C -0.169 4.169 6 C 0.514 3.486 7 O -0.539 6.539 8 N -0.618 5.618 9 C 0.272 3.728 10 C -0.302 4.302 11 C 0.088 3.912 12 C -0.082 4.082 13 N -0.341 5.341 14 C 0.275 3.725 15 C -0.555 4.555 16 H 0.049 0.951 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.275 1.275 23 N -0.353 5.353 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.427 0.573 31 H 0.163 0.837 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.026 0.974 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 -6.451 5.636 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.313 6.313 3 C 0.024 3.976 4 H 0.145 0.855 5 C -0.227 4.227 6 C 0.301 3.699 7 O -0.413 6.413 8 N -0.270 5.270 9 C 0.018 3.982 10 C -0.333 4.333 11 C -0.042 4.042 12 C -0.140 4.140 13 N -0.124 5.124 14 C 0.156 3.844 15 C -0.593 4.593 16 H 0.068 0.932 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.795 3.205 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.200 1.200 23 N -0.184 5.184 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.265 0.735 31 H 0.180 0.820 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.451 -5.955 5.375 19.207 hybrid contribution 0.442 0.104 0.463 0.648 sum -17.010 -5.851 5.838 18.912 Atomic orbital electron populations 1.23127 0.78225 1.04342 1.01702 1.88012 1.22250 1.25886 1.95134 1.21931 0.90427 0.87607 0.97658 0.85507 1.22295 1.04824 1.02383 0.93189 1.21451 0.87041 0.82176 0.79252 1.90636 1.71481 1.31492 1.47643 1.42496 1.15493 1.13536 1.55433 1.19311 0.88519 0.92956 0.97419 1.21421 0.97682 1.00571 1.13628 1.21733 0.97412 0.85621 0.99435 1.20474 0.96602 0.97443 0.99505 1.48803 1.15063 1.07135 1.41390 1.19260 0.79253 0.89969 0.95873 1.21413 1.02235 1.32664 1.03015 0.93229 1.25727 0.99855 0.93797 0.98370 1.69996 1.27200 1.31355 1.27039 0.85411 0.77775 0.78770 0.78573 1.19089 1.19714 1.19997 1.77175 0.97540 1.22116 1.21580 0.88547 0.91498 0.92657 0.92751 0.89252 0.88239 0.73466 0.82001 0.89801 0.87651 0.91105 0.92976 0.95618 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.49 16 2 O -0.39 -8.72 9.88 -129.95 -1.28 -10.01 16 3 C 0.08 1.58 3.14 29.85 0.09 1.67 16 4 H 0.13 1.44 7.79 -2.39 -0.02 1.42 16 5 C -0.17 -2.33 9.42 71.98 0.68 -1.65 16 6 C 0.51 15.00 7.20 87.66 0.63 15.63 16 7 O -0.54 -20.58 13.63 15.97 0.22 -20.36 16 8 N -0.62 -18.61 5.34 -307.51 -1.64 -20.26 16 9 C 0.27 11.21 8.11 133.33 1.08 12.29 16 10 C -0.30 -12.79 9.52 22.11 0.21 -12.58 16 11 C 0.09 3.82 6.92 41.39 0.29 4.11 16 12 C -0.08 -2.82 10.11 71.24 0.72 -2.10 16 13 N -0.34 -16.72 3.59 -338.45 -1.22 -17.93 16 14 C 0.28 14.63 5.99 85.63 0.51 15.14 16 15 C -0.56 -31.25 9.39 25.60 0.24 -31.01 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 17 C 0.02 1.29 5.46 84.66 0.46 1.76 16 18 N -0.92 -51.86 13.29 21.45 0.28 -51.57 16 19 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 N -0.35 -16.66 12.59 -54.45 -0.69 -17.34 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 0.49 7.87 -2.39 -0.02 0.48 16 26 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 0.97 7.56 -2.39 -0.02 0.95 16 29 H 0.10 0.84 7.87 -2.39 -0.02 0.82 16 30 H 0.43 9.59 8.24 -92.71 -0.76 8.83 16 31 H 0.16 6.76 5.92 -2.91 -0.02 6.74 16 32 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.07 2.45 7.07 -2.39 -0.02 2.44 16 35 H 0.05 2.74 7.04 -2.39 -0.02 2.72 16 36 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 Total: -1.00 -74.20 319.53 4.17 -70.03 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.32 Total: 17.64 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.14 Total: 4.74 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.26 Total: -107.10 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.07 Total: -30.37 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.20 4.17 -70.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271154900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.255 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds