Wall clock time and date at job start Mon Mar 30 2020 00:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99801 * 2 1 4 4 H 1.48495 * 109.46988 * 239.99882 * 3 2 1 5 5 H 1.48496 * 109.46949 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46959 * 119.99886 * 3 2 1 7 7 C 1.37873 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00251 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47386 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.46845 * 180.02562 * 12 11 10 14 14 O 1.20824 * 119.99980 * 359.97438 * 13 12 11 15 15 O 1.34226 * 119.99843 * 180.02562 * 13 12 11 16 16 C 1.45199 * 117.00189 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47276 * 179.97438 * 16 15 13 18 18 N 1.46500 * 109.47084 * 179.97438 * 17 16 15 19 19 C 1.34429 * 126.81895 * 124.99739 * 18 17 16 20 20 N 1.30837 * 108.07952 * 180.02562 * 19 18 17 21 21 C 1.33246 * 109.82318 * 359.97438 * 20 19 18 22 22 N 1.30712 * 108.94935 * 0.27015 * 21 20 19 23 23 H 0.96998 * 120.00343 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.46969 * 59.99828 * 9 7 2 25 25 H 1.09003 * 109.47034 * 300.00019 * 9 7 2 26 26 H 1.09004 * 109.47467 * 60.00029 * 10 9 7 27 27 H 1.08993 * 109.47629 * 300.00007 * 10 9 7 28 28 H 1.08996 * 109.47106 * 59.99916 * 11 10 9 29 29 H 1.09003 * 109.47142 * 299.99957 * 11 10 9 30 30 H 1.08996 * 109.47421 * 59.99880 * 12 11 10 31 31 H 1.08994 * 109.47034 * 299.99570 * 12 11 10 32 32 H 1.09002 * 109.47138 * 59.99195 * 16 15 13 33 33 H 1.08996 * 109.46848 * 299.99245 * 16 15 13 34 34 H 1.09002 * 109.47279 * 59.99791 * 17 16 15 35 35 H 1.08995 * 109.47424 * 299.99969 * 17 16 15 36 36 H 1.08000 * 125.96340 * 359.97438 * 19 18 17 37 37 H 1.08002 * 125.52127 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 2.4747 -6.1500 0.0005 13 6 1.7212 -7.4551 -0.0007 14 8 0.5129 -7.4551 -0.0016 15 8 2.3923 -8.6175 0.0001 16 6 1.6016 -9.8353 -0.0018 17 6 2.5337 -11.0486 -0.0012 18 7 1.7358 -12.2773 -0.0025 19 6 1.8157 -13.2888 -0.8843 20 7 0.9379 -14.1965 -0.5415 21 6 0.2823 -13.8020 0.5493 22 7 0.7318 -12.6300 0.9141 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8903 26 1 2.8721 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 0.8541 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8897 30 1 3.1007 -6.0923 0.8909 31 1 3.1019 -6.0922 -0.8890 32 1 0.9743 -9.8598 -0.8929 33 1 0.9713 -9.8606 0.8871 34 1 3.1612 -11.0243 0.8897 35 1 3.1638 -11.0233 -0.8902 36 1 2.4867 -13.3425 -1.7288 37 1 -0.4977 -14.3581 1.0482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:52 Heat of formation + Delta-G solvation = -16.968506 kcal Electronic energy + Delta-G solvation = -18704.081258 eV Core-core repulsion = 15483.101426 eV Total energy + Delta-G solvation = -3220.979833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.50023 -40.60727 -37.14355 -35.05936 -34.93080 -32.72452 -31.66121 -30.47121 -29.56915 -26.09511 -24.54727 -22.76244 -22.44524 -21.78706 -20.71006 -20.08545 -18.07079 -17.31272 -17.04792 -16.62962 -16.19628 -15.86621 -15.34545 -15.13903 -14.57189 -14.46777 -14.10937 -13.70592 -12.97271 -12.79131 -12.54634 -12.34219 -12.04503 -11.77428 -11.71003 -11.03387 -10.94419 -10.66808 -10.62842 -10.54964 -10.50262 -10.43846 -10.26482 -10.18813 -9.68976 -9.32424 -9.06231 -8.33761 -5.98498 -4.01424 1.13531 1.59463 2.15570 2.52997 2.61386 3.33353 3.37963 3.39996 3.86117 3.89741 4.17552 4.42650 4.46318 4.56566 4.70562 4.73023 5.06757 5.13205 5.19743 5.23699 5.36853 5.63287 5.75169 5.96804 5.99528 6.11273 6.22280 6.28171 6.41209 6.71447 6.89545 7.12076 7.61349 7.65772 7.69131 7.83640 8.01762 8.43231 9.05863 9.62452 11.12746 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.077574 B = 0.002198 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.858808 B =12736.640511 C =12957.788091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.110 4.110 12 C -0.109 4.109 13 C 0.462 3.538 14 O -0.499 6.499 15 O -0.361 6.361 16 C 0.055 3.945 17 C 0.134 3.866 18 N -0.380 5.380 19 C 0.261 3.739 20 N -0.546 5.546 21 C 0.202 3.798 22 N -0.317 5.317 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.222 0.778 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 -26.010 -1.280 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.147 4.147 12 C -0.147 4.147 13 C 0.305 3.695 14 O -0.385 6.385 15 O -0.278 6.278 16 C -0.020 4.020 17 C 0.011 3.989 18 N -0.173 5.173 19 C -0.036 4.036 20 N -0.273 5.273 21 C -0.101 4.101 22 N -0.144 5.144 23 H 0.071 0.929 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.238 0.762 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.317 -25.739 -0.825 26.515 hybrid contribution 0.426 0.927 -0.158 1.033 sum 6.744 -24.812 -0.984 25.731 Atomic orbital electron populations 1.69959 1.06060 1.26699 1.50717 1.25046 0.94860 0.99282 0.95396 0.86652 0.79561 0.83171 0.78567 1.20263 1.21312 1.20265 1.21226 0.92969 0.91130 1.50705 0.92732 1.19094 0.94027 0.91224 0.97380 1.21649 0.99158 0.93480 1.00445 1.21600 0.97104 0.92692 1.03325 1.21635 0.99949 0.87433 1.05660 1.24298 0.87692 0.85469 0.72017 1.90705 1.15693 1.87566 1.44536 1.86425 1.41768 1.14710 1.84913 1.23026 0.93304 0.81296 1.04395 1.21522 0.91722 0.79390 1.06255 1.50396 1.28901 1.16655 1.21334 1.26186 0.97671 0.84268 0.95482 1.70590 1.10781 1.30106 1.15854 1.26095 0.99624 0.91473 0.92924 1.78129 1.04839 1.16985 1.14442 0.92944 0.96553 0.96534 0.93146 0.93164 0.91499 0.91481 0.87671 0.87703 0.90689 0.89680 0.87832 0.86614 0.76174 0.76454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 10 C -0.11 -2.15 5.15 -26.73 -0.14 -2.29 16 11 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.11 -1.34 5.81 -27.88 -0.16 -1.51 16 13 C 0.46 6.15 7.96 36.01 0.29 6.43 16 14 O -0.50 -8.45 15.73 -18.75 -0.29 -8.74 16 15 O -0.36 -3.81 10.22 -39.25 -0.40 -4.22 16 16 C 0.06 0.51 5.67 37.16 0.21 0.72 16 17 C 0.13 0.77 6.93 -4.04 -0.03 0.74 16 18 N -0.38 -2.96 3.69 -62.63 -0.23 -3.19 16 19 C 0.26 1.70 12.63 -90.65 -1.14 0.56 16 20 N -0.55 -4.96 11.19 -15.83 -0.18 -5.14 16 21 C 0.20 1.77 13.03 -91.81 -1.20 0.57 16 22 N -0.32 -3.23 12.56 29.29 0.37 -2.86 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 29 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.08 0.95 8.13 -51.93 -0.42 0.52 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.12 0.30 8.09 -51.93 -0.42 -0.12 16 36 H 0.22 0.38 8.06 -52.49 -0.42 -0.04 16 37 H 0.22 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -35.76 328.49 -8.36 -44.13 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -5.45 Total: -5.16 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -2.84 Total: -9.94 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.70 Total: -37.66 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.70 Total: -12.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.76 -8.36 -44.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.160 kcal (2) G-P(sol) polarization free energy of solvation -35.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds