Wall clock time and date at job start Mon Mar 30 2020 01:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39869 * 125.89669 * 2 1 4 4 C 1.35312 * 107.91613 * 180.13944 * 3 2 1 5 5 C 1.50706 * 126.12403 * 179.90635 * 4 3 2 6 6 N 1.34940 * 107.74885 * 359.64128 * 4 3 2 7 7 C 1.46500 * 126.03809 * 180.20683 * 6 4 3 8 8 C 1.52995 * 109.47333 * 90.00086 * 7 6 4 9 9 N 1.46500 * 109.47333 * 179.97438 * 8 7 6 10 10 C 1.36937 * 120.00070 * 90.00004 * 9 8 7 11 11 H 1.07998 * 120.00192 * 9.27476 * 10 9 8 12 12 C 1.38814 * 120.00079 * 189.27604 * 10 9 8 13 13 N 1.31618 * 119.99652 * 24.76188 * 12 10 9 14 14 Si 1.86800 * 120.00297 * 204.75497 * 12 10 9 15 15 H 1.48503 * 109.46867 * 0.02562 * 14 12 10 16 16 H 1.48491 * 109.46973 * 120.00138 * 14 12 10 17 17 H 1.48500 * 109.47120 * 240.00199 * 14 12 10 18 18 C 1.46500 * 120.00282 * 269.99739 * 9 8 7 19 19 C 1.50704 * 109.47071 * 89.20219 * 18 9 8 20 20 O 1.20823 * 119.99776 * 0.02562 * 19 18 9 21 21 O 1.34230 * 119.99745 * 180.02562 * 19 18 9 22 22 N 1.30831 * 125.89663 * 179.73924 * 2 1 3 23 23 H 1.08997 * 109.47633 * 270.23651 * 1 2 3 24 24 H 1.09006 * 109.47186 * 30.24071 * 1 2 3 25 25 H 1.09000 * 109.47359 * 150.23447 * 1 2 3 26 26 H 1.08000 * 126.04212 * 0.02562 * 3 2 1 27 27 H 1.09003 * 109.47027 * 269.68566 * 5 4 3 28 28 H 1.08996 * 109.47217 * 149.68947 * 5 4 3 29 29 H 1.08991 * 109.47318 * 29.68601 * 5 4 3 30 30 H 1.09009 * 109.46973 * 210.00068 * 7 6 4 31 31 H 1.09000 * 109.47123 * 329.99595 * 7 6 4 32 32 H 1.08999 * 109.47097 * 300.00026 * 8 7 6 33 33 H 1.09000 * 109.47417 * 59.99689 * 8 7 6 34 34 H 0.97004 * 120.00140 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47828 * 209.20972 * 18 9 8 36 36 H 1.09008 * 109.47220 * 329.20730 * 18 9 8 37 37 H 0.96700 * 116.99417 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 -0.0031 5 6 4.8350 1.5989 -0.0063 6 7 3.6087 -0.6340 0.0030 7 6 4.7899 -1.5007 0.0066 8 6 5.2015 -1.7959 1.4503 9 7 6.3823 -2.6630 1.4538 10 6 7.6361 -2.1125 1.4508 11 1 7.7595 -1.0495 1.5966 12 6 8.7486 -2.9206 1.2604 13 7 8.6293 -4.0639 0.6193 14 14 10.4147 -2.3855 1.9138 15 1 10.2815 -1.0712 2.5921 16 1 10.9134 -3.3939 2.8831 17 1 11.3736 -2.2663 0.7862 18 6 6.2218 -4.1192 1.4607 19 6 6.1465 -4.6230 0.0424 20 8 6.2199 -3.8455 -0.8795 21 8 5.9979 -5.9354 -0.1966 22 7 2.2741 -1.0598 0.0048 23 1 -0.3634 0.0042 1.0276 24 1 -0.3634 0.8879 -0.5176 25 1 -0.3634 -0.8921 -0.5102 26 1 1.9923 2.1598 0.0004 27 1 5.1301 1.8073 -1.0347 28 1 5.6508 1.0934 0.5104 29 1 4.6072 2.5352 0.5031 30 1 4.5561 -2.4356 -0.5030 31 1 5.6091 -1.0004 -0.5098 32 1 5.4352 -0.8611 1.9598 33 1 4.3822 -2.2961 1.9667 34 1 9.4068 -4.6285 0.4858 35 1 7.0737 -4.5764 1.9640 36 1 5.3046 -4.3812 1.9885 37 1 5.9551 -6.2109 -1.1225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832881807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:27 Heat of formation + Delta-G solvation = -15.433009 kcal Electronic energy + Delta-G solvation = -20876.150001 eV Core-core repulsion = 17655.236753 eV Total energy + Delta-G solvation = -3220.913249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.15922 -40.61435 -37.94833 -36.30626 -35.26314 -33.56614 -32.68766 -30.95623 -29.24364 -27.98155 -27.72809 -25.29083 -23.26314 -21.86536 -21.24644 -20.12598 -18.89806 -18.52656 -17.72963 -17.12228 -16.71538 -16.20296 -16.06928 -15.74082 -15.24180 -14.89329 -14.57265 -14.21724 -14.07382 -13.92821 -13.68341 -13.50171 -13.32624 -13.19256 -12.85044 -12.81622 -12.63574 -12.53999 -12.20761 -12.07152 -11.87516 -11.75454 -11.35966 -11.16654 -10.61916 -10.01778 -9.46268 -9.09555 -8.03132 -5.32591 0.99833 1.47689 1.51167 1.59231 1.63346 1.90404 1.99498 2.45004 2.74704 3.20383 3.44237 3.70242 3.81524 4.06378 4.25811 4.27509 4.46895 4.55546 4.58362 4.69293 4.69944 4.82671 4.87993 4.92977 5.01755 5.07369 5.09528 5.12075 5.20897 5.41754 5.58858 5.90000 6.07773 6.12112 6.22757 6.91294 6.93552 7.54301 7.71880 8.05032 9.06899 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.005923 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.006800 B = 4726.458845 C = 5677.029716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.056 3.944 3 C -0.287 4.287 4 C 0.074 3.926 5 C -0.091 4.091 6 N -0.373 5.373 7 C 0.130 3.870 8 C 0.146 3.854 9 N -0.573 5.573 10 C -0.263 4.263 11 H 0.088 0.912 12 C -0.044 4.044 13 N -0.927 5.927 14 Si 0.972 3.028 15 H -0.264 1.264 16 H -0.288 1.288 17 H -0.302 1.302 18 C 0.183 3.817 19 C 0.482 3.518 20 O -0.552 6.552 21 O -0.535 6.535 22 N -0.348 5.348 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.172 0.828 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.252 0.748 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.608 7.539 1.212 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.316 4.316 4 C -0.054 4.054 5 C -0.149 4.149 6 N -0.155 5.155 7 C 0.006 3.994 8 C 0.018 3.982 9 N -0.293 5.293 10 C -0.392 4.392 11 H 0.105 0.895 12 C -0.240 4.240 13 N -0.574 5.574 14 Si 0.801 3.199 15 H -0.188 1.188 16 H -0.214 1.214 17 H -0.230 1.230 18 C 0.054 3.946 19 C 0.324 3.676 20 O -0.441 6.441 21 O -0.346 6.346 22 N -0.171 5.171 23 H 0.106 0.894 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.189 0.811 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.263 6.415 1.385 12.182 hybrid contribution 1.324 0.326 -1.031 1.709 sum -8.939 6.741 0.354 11.201 Atomic orbital electron populations 1.20261 0.84274 1.03979 1.03834 1.23014 0.98534 0.90643 0.98771 1.21413 0.90352 1.00586 1.19262 1.21791 0.98897 0.84527 1.00209 1.20552 0.91950 0.98434 1.03956 1.48945 1.05101 1.04980 1.56523 1.22498 0.82105 0.93221 1.01563 1.21284 0.88799 0.95334 0.92752 1.44369 1.02159 1.00213 1.82574 1.19630 0.82578 0.94230 1.42784 0.89466 1.25476 1.01290 0.97750 0.99437 1.69982 1.30265 1.15317 1.41819 0.85142 0.79365 0.78081 0.77343 1.18844 1.21430 1.23011 1.20492 1.01820 0.83954 0.88303 1.25280 0.68537 0.78670 0.95108 1.90458 1.47947 1.57986 1.47697 1.84551 1.85706 1.28488 1.35843 1.77247 0.87335 1.24850 1.27701 0.89427 0.88234 0.91478 0.81070 0.89683 0.91856 0.87033 0.91561 0.90635 0.91551 0.92543 0.93824 0.88143 0.89920 0.74171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.45 71.24 0.74 -0.56 16 2 C 0.06 1.69 7.22 43.10 0.31 2.00 16 3 C -0.29 -7.99 10.65 21.99 0.23 -7.75 16 4 C 0.07 2.31 6.93 41.41 0.29 2.60 16 5 C -0.09 -2.22 9.90 71.24 0.71 -1.51 16 6 N -0.37 -14.08 3.61 -334.70 -1.21 -15.29 16 7 C 0.13 5.39 5.64 86.38 0.49 5.88 16 8 C 0.15 5.92 6.04 86.38 0.52 6.44 16 9 N -0.57 -26.82 2.09 -706.34 -1.48 -28.30 16 10 C -0.26 -13.32 9.70 84.03 0.82 -12.50 16 11 H 0.09 4.25 7.93 -2.91 -0.02 4.23 16 12 C -0.04 -2.30 4.89 84.86 0.41 -1.89 16 13 N -0.93 -50.95 9.02 21.65 0.20 -50.76 16 14 Si 0.97 42.56 29.62 68.60 2.03 44.60 16 15 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 16 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 18 C 0.18 8.35 5.58 85.63 0.48 8.83 16 19 C 0.48 22.87 6.33 71.24 0.45 23.32 16 20 O -0.55 -29.44 14.42 21.97 0.32 -29.12 16 21 O -0.53 -21.45 13.42 -51.42 -0.69 -22.14 16 22 N -0.35 -13.22 12.58 -47.39 -0.60 -13.82 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 1.73 7.72 -2.39 -0.02 1.71 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 3.13 6.30 -2.38 -0.02 3.11 16 31 H 0.08 3.33 7.66 -2.39 -0.02 3.31 16 32 H 0.07 2.56 8.03 -2.39 -0.02 2.54 16 33 H 0.06 2.21 7.90 -2.39 -0.02 2.19 16 34 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.10 4.95 6.29 -2.39 -0.02 4.93 16 36 H 0.08 3.23 7.90 -2.38 -0.02 3.21 16 37 H 0.40 12.78 9.10 -74.06 -0.67 12.10 16 Total: -1.00 -67.59 315.30 4.43 -63.16 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.41 Total: 26.82 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 5.45 Total: 24.85 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.09 Total: -108.16 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.37 Total: -51.27 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.60 kcal Total: -67.59 4.43 -63.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832881807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.730 kcal (2) G-P(sol) polarization free energy of solvation -67.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds