Wall clock time and date at job start Mon Mar 30 2020 01:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00034 * 2 1 4 4 C 1.52997 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47379 * 65.00040 * 4 3 2 6 6 C 1.36877 * 119.99952 * 263.31233 * 5 4 3 7 7 H 1.08008 * 120.00081 * 42.13750 * 6 5 4 8 8 C 1.39015 * 120.00175 * 222.13971 * 6 5 4 9 9 N 1.31395 * 119.99686 * 9.63416 * 8 6 5 10 10 Si 1.86797 * 120.00293 * 189.64068 * 8 6 5 11 11 H 1.48503 * 109.47359 * 94.96751 * 10 8 6 12 12 H 1.48497 * 109.47211 * 214.97177 * 10 8 6 13 13 H 1.48506 * 109.46984 * 334.97245 * 10 8 6 14 14 C 1.34782 * 119.99950 * 83.30794 * 5 4 3 15 15 O 1.21721 * 119.99441 * 180.47082 * 14 5 4 16 16 C 1.46631 * 119.99698 * 0.47636 * 14 5 4 17 17 N 1.38163 * 126.85603 * 350.45355 * 16 14 5 18 18 H 0.96993 * 126.47609 * 359.97438 * 17 16 14 19 19 C 1.34550 * 107.04491 * 180.02562 * 17 16 14 20 20 C 1.50703 * 125.40559 * 179.97438 * 19 17 16 21 21 N 1.30861 * 109.18189 * 0.22846 * 19 17 16 22 22 C 1.33303 * 109.69866 * 359.62320 * 21 19 17 23 23 C 1.50703 * 126.11256 * 180.15396 * 22 21 19 24 24 H 1.09000 * 109.47046 * 299.99628 * 1 2 3 25 25 H 1.08998 * 109.47381 * 59.99619 * 1 2 3 26 26 H 1.08997 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47170 * 60.00153 * 3 2 1 28 28 H 1.09001 * 109.47577 * 300.00555 * 3 2 1 29 29 H 1.09008 * 109.47177 * 304.99998 * 4 3 2 30 30 H 1.09001 * 109.46932 * 185.00013 * 4 3 2 31 31 H 0.96996 * 119.99683 * 184.78167 * 9 8 6 32 32 H 1.09002 * 109.47092 * 84.99327 * 20 19 17 33 33 H 1.09002 * 109.47404 * 324.98863 * 20 19 17 34 34 H 1.09001 * 109.47192 * 204.98320 * 20 19 17 35 35 H 1.09003 * 109.47021 * 270.26283 * 23 22 21 36 36 H 1.09001 * 109.46835 * 30.25835 * 23 22 21 37 37 H 1.09003 * 109.46882 * 150.26070 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2286 -0.7801 -1.2986 7 1 3.5637 -1.4719 -0.8028 8 6 5.3413 -1.2551 -1.9832 9 7 6.2501 -0.4144 -2.4234 10 14 5.5444 -3.0885 -2.2776 11 1 5.0109 -3.4366 -3.6191 12 1 6.9846 -3.4441 -2.2102 13 1 4.7991 -3.8424 -1.2377 14 6 4.1317 1.3176 -2.3595 15 8 4.4892 0.8007 -3.4019 16 6 3.8707 2.7595 -2.3077 17 7 3.2904 3.4599 -1.2676 18 1 2.9759 3.0899 -0.4280 19 6 3.2431 4.7519 -1.6400 20 6 2.6856 5.8798 -0.8105 21 7 3.7532 4.8727 -2.8391 22 6 4.1527 3.6797 -3.2797 23 6 4.7952 3.3948 -4.6128 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8515 0.5681 0.8410 30 1 3.9785 2.1765 0.0889 31 1 6.9902 -0.7377 -2.9605 32 1 3.4556 6.2467 -0.1318 33 1 1.8339 5.5199 -0.2333 34 1 2.3642 6.6889 -1.4665 35 1 4.0222 3.1727 -5.3486 36 1 5.3643 4.2666 -4.9356 37 1 5.4636 2.5390 -4.5184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909561592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:13 Heat of formation + Delta-G solvation = 14.364855 kcal Electronic energy + Delta-G solvation = -21564.997658 eV Core-core repulsion = 18345.376541 eV Total energy + Delta-G solvation = -3219.621116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74745 -38.37520 -37.21237 -34.63066 -32.76539 -32.23432 -31.12951 -29.19123 -28.57363 -26.18807 -26.14897 -24.18099 -22.56961 -20.82985 -20.79459 -18.75211 -17.41803 -16.48620 -16.30473 -15.57279 -15.11146 -15.07117 -14.78762 -14.20967 -13.94912 -13.47963 -13.26649 -12.84923 -12.67339 -12.56820 -12.07740 -12.02724 -11.93837 -11.65138 -11.53527 -11.29033 -11.17762 -10.92030 -10.79379 -10.55189 -10.16329 -9.64684 -9.48432 -9.28964 -8.84046 -8.15817 -7.60478 -7.15686 -6.01809 -3.86112 2.17200 3.34334 3.39901 3.41771 3.43746 3.47677 3.99579 4.26899 4.68808 4.72696 4.84662 5.19252 5.20599 5.29980 5.35928 5.40737 5.52575 5.53217 5.56608 5.64394 5.71527 5.77784 5.81564 5.96119 6.08771 6.30170 6.43660 6.50558 6.58362 6.85086 7.32161 7.40387 7.69194 7.76515 8.26730 8.53600 9.01904 9.16208 9.60822 10.25172 11.00687 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.008640 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.831659 B = 3239.888539 C = 4508.295158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.031 3.969 4 C 0.086 3.914 5 N -0.440 5.440 6 C -0.325 4.325 7 H 0.088 0.912 8 C 0.053 3.947 9 N -0.821 5.821 10 Si 0.915 3.085 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.532 3.468 15 O -0.498 6.498 16 C -0.036 4.036 17 N -0.567 5.567 18 H 0.419 0.581 19 C 0.188 3.812 20 C -0.064 4.064 21 N -0.494 5.494 22 C 0.052 3.948 23 C -0.063 4.063 24 H 0.034 0.966 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 7.621 6.570 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C -0.048 4.048 4 C -0.039 4.039 5 N -0.162 5.162 6 C -0.453 4.453 7 H 0.106 0.894 8 C -0.157 4.157 9 N -0.456 5.456 10 Si 0.743 3.257 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.197 1.197 14 C 0.318 3.682 15 O -0.372 6.372 16 C -0.153 4.153 17 N -0.183 5.183 18 H 0.267 0.733 19 C -0.075 4.075 20 C -0.123 4.123 21 N -0.216 5.216 22 C -0.080 4.080 23 C -0.121 4.121 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.775 7.870 5.520 12.363 hybrid contribution -0.377 -1.354 0.851 1.643 sum -8.152 6.517 6.370 12.227 Atomic orbital electron populations 1.22726 0.82275 1.02539 0.99192 1.88104 1.18399 1.26258 1.95051 1.23393 0.96233 0.86137 0.99006 1.21924 0.90714 0.98623 0.92688 1.43045 1.60782 1.07977 1.04348 1.19188 1.07426 0.80480 1.38170 0.89439 1.25331 0.94139 0.98740 0.97485 1.69924 1.10308 1.34967 1.30386 0.86118 0.77062 0.83779 0.78780 1.20550 1.21318 1.19736 1.16574 0.84498 0.82052 0.85032 1.90659 1.46287 1.70877 1.29415 1.22072 1.07562 0.95590 0.90064 1.44523 1.48079 1.08312 1.17355 0.73348 1.23139 1.04707 0.85411 0.94248 1.20131 1.00066 0.94055 0.98040 1.69861 1.16706 1.26130 1.08904 1.20853 1.02372 0.87333 0.97491 1.20098 0.99804 1.02000 0.90179 0.94753 0.94500 0.89752 0.93530 0.93527 0.88996 0.91297 0.92584 0.90479 0.91240 0.89316 0.91904 0.92445 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.50 10.47 -35.23 -0.37 -6.87 16 3 C 0.03 0.50 4.75 37.16 0.18 0.67 16 4 C 0.09 1.65 5.29 -4.04 -0.02 1.63 16 5 N -0.44 -11.03 2.50 -116.31 -0.29 -11.32 16 6 C -0.33 -8.92 9.09 -15.01 -0.14 -9.06 16 7 H 0.09 2.37 7.83 -52.48 -0.41 1.96 16 8 C 0.05 1.49 4.67 -17.45 -0.08 1.41 16 9 N -0.82 -24.29 10.88 55.50 0.60 -23.68 16 10 Si 0.92 21.84 29.57 -169.99 -5.03 16.82 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 14 C 0.53 13.99 6.83 -12.87 -0.09 13.91 16 15 O -0.50 -14.78 12.18 5.17 0.06 -14.72 16 16 C -0.04 -0.82 6.42 -82.15 -0.53 -1.34 16 17 N -0.57 -10.03 4.30 -7.01 -0.03 -10.06 16 18 H 0.42 6.30 3.73 -40.82 -0.15 6.15 16 19 C 0.19 3.13 8.12 -155.56 -1.26 1.86 16 20 C -0.06 -0.69 10.51 36.01 0.38 -0.31 16 21 N -0.49 -9.84 11.20 -6.81 -0.08 -9.91 16 22 C 0.05 1.13 7.15 -82.48 -0.59 0.55 16 23 C -0.06 -1.29 9.80 36.01 0.35 -0.94 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.79 6.63 -51.93 -0.34 0.45 16 29 H 0.09 1.72 7.99 -51.92 -0.41 1.31 16 30 H 0.07 1.20 5.16 -51.93 -0.27 0.94 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 2.09 6.72 -51.93 -0.35 1.74 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -35.05 305.70 -6.08 -41.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.88 Total: 4.11 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -0.69 Total: 9.89 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.21 Total: -54.97 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.31 Total: -21.59 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.05 -6.08 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.500 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds