Wall clock time and date at job start Mon Mar 30 2020 01:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00034 * 2 1 4 4 C 1.52997 * 109.47056 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47379 * 65.00040 * 4 3 2 6 6 C 1.36877 * 119.99952 * 263.31233 * 5 4 3 7 7 H 1.08008 * 120.00081 * 42.13750 * 6 5 4 8 8 C 1.39015 * 120.00175 * 222.13971 * 6 5 4 9 9 N 1.31395 * 119.99686 * 9.63416 * 8 6 5 10 10 Si 1.86797 * 120.00293 * 189.64068 * 8 6 5 11 11 H 1.48503 * 109.47359 * 94.96751 * 10 8 6 12 12 H 1.48497 * 109.47211 * 214.97177 * 10 8 6 13 13 H 1.48506 * 109.46984 * 334.97245 * 10 8 6 14 14 C 1.34782 * 119.99950 * 83.30794 * 5 4 3 15 15 O 1.21721 * 119.99441 * 180.47082 * 14 5 4 16 16 C 1.46631 * 119.99698 * 0.47636 * 14 5 4 17 17 N 1.38163 * 126.85603 * 350.45355 * 16 14 5 18 18 H 0.96993 * 126.47609 * 359.97438 * 17 16 14 19 19 C 1.34550 * 107.04491 * 180.02562 * 17 16 14 20 20 C 1.50703 * 125.40559 * 179.97438 * 19 17 16 21 21 N 1.30861 * 109.18189 * 0.22846 * 19 17 16 22 22 C 1.33303 * 109.69866 * 359.62320 * 21 19 17 23 23 C 1.50703 * 126.11256 * 180.15396 * 22 21 19 24 24 H 1.09000 * 109.47046 * 299.99628 * 1 2 3 25 25 H 1.08998 * 109.47381 * 59.99619 * 1 2 3 26 26 H 1.08997 * 109.47211 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47170 * 60.00153 * 3 2 1 28 28 H 1.09001 * 109.47577 * 300.00555 * 3 2 1 29 29 H 1.09008 * 109.47177 * 304.99998 * 4 3 2 30 30 H 1.09001 * 109.46932 * 185.00013 * 4 3 2 31 31 H 0.96996 * 119.99683 * 184.78167 * 9 8 6 32 32 H 1.09002 * 109.47092 * 84.99327 * 20 19 17 33 33 H 1.09002 * 109.47404 * 324.98863 * 20 19 17 34 34 H 1.09001 * 109.47192 * 204.98320 * 20 19 17 35 35 H 1.09003 * 109.47021 * 270.26283 * 23 22 21 36 36 H 1.09001 * 109.46835 * 30.25835 * 23 22 21 37 37 H 1.09003 * 109.46882 * 150.26070 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2286 -0.7801 -1.2986 7 1 3.5637 -1.4719 -0.8028 8 6 5.3413 -1.2551 -1.9832 9 7 6.2501 -0.4144 -2.4234 10 14 5.5444 -3.0885 -2.2776 11 1 5.0109 -3.4366 -3.6191 12 1 6.9846 -3.4441 -2.2102 13 1 4.7991 -3.8424 -1.2377 14 6 4.1317 1.3176 -2.3595 15 8 4.4892 0.8007 -3.4019 16 6 3.8707 2.7595 -2.3077 17 7 3.2904 3.4599 -1.2676 18 1 2.9759 3.0899 -0.4280 19 6 3.2431 4.7519 -1.6400 20 6 2.6856 5.8798 -0.8105 21 7 3.7532 4.8727 -2.8391 22 6 4.1527 3.6797 -3.2797 23 6 4.7952 3.3948 -4.6128 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8515 0.5681 0.8410 30 1 3.9785 2.1765 0.0889 31 1 6.9902 -0.7377 -2.9605 32 1 3.4556 6.2467 -0.1318 33 1 1.8339 5.5199 -0.2333 34 1 2.3642 6.6889 -1.4665 35 1 4.0222 3.1727 -5.3486 36 1 5.3643 4.2666 -4.9356 37 1 5.4636 2.5390 -4.5184 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909561592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:12 Heat of formation + Delta-G solvation = -10.764575 kcal Electronic energy + Delta-G solvation = -21566.087351 eV Core-core repulsion = 18345.376541 eV Total energy + Delta-G solvation = -3220.710810 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.26519 -40.06636 -38.69881 -36.38594 -34.57399 -33.84807 -32.66379 -30.73062 -29.91548 -27.95126 -27.31502 -25.94554 -24.08664 -22.54108 -22.21052 -20.35835 -19.22910 -18.13281 -17.69916 -17.12090 -16.62915 -16.45676 -16.37088 -15.82433 -15.75925 -14.91969 -14.82068 -14.32141 -14.01218 -13.92276 -13.62911 -13.27220 -13.24420 -13.16426 -12.99270 -12.88584 -12.79981 -12.75553 -12.59877 -12.15422 -12.00538 -11.21309 -10.91337 -10.82289 -10.59162 -10.14715 -9.24776 -9.12398 -8.10226 -5.98731 0.58767 1.40850 1.46282 1.53845 1.93641 2.04132 2.36010 2.75626 2.87162 3.09197 3.27771 3.45736 3.86371 4.03883 4.06459 4.15587 4.19976 4.30369 4.44732 4.50336 4.54670 4.63748 4.78652 4.80843 4.82658 4.83279 4.92868 5.05625 5.08403 5.23211 5.54861 5.70266 6.22082 6.24877 6.44661 6.95095 7.02705 7.20353 7.61265 8.29376 8.91271 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.008640 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.831659 B = 3239.888539 C = 4508.295158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.038 3.962 4 C 0.081 3.919 5 N -0.455 5.455 6 C -0.337 4.337 7 H 0.086 0.914 8 C 0.002 3.998 9 N -0.859 5.859 10 Si 0.976 3.024 11 H -0.290 1.290 12 H -0.282 1.282 13 H -0.255 1.255 14 C 0.523 3.477 15 O -0.550 6.550 16 C -0.074 4.074 17 N -0.555 5.555 18 H 0.432 0.568 19 C 0.219 3.781 20 C -0.066 4.066 21 N -0.520 5.520 22 C 0.043 3.957 23 C -0.058 4.058 24 H 0.066 0.934 25 H 0.035 0.965 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.036 0.964 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.257 0.743 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.317 9.393 8.857 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.040 4.040 4 C -0.043 4.043 5 N -0.176 5.176 6 C -0.465 4.465 7 H 0.103 0.897 8 C -0.204 4.204 9 N -0.495 5.495 10 Si 0.801 3.199 11 H -0.217 1.217 12 H -0.208 1.208 13 H -0.178 1.178 14 C 0.312 3.688 15 O -0.428 6.428 16 C -0.191 4.191 17 N -0.171 5.171 18 H 0.282 0.718 19 C -0.045 4.045 20 C -0.124 4.124 21 N -0.242 5.242 22 C -0.089 4.089 23 C -0.115 4.115 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.752 9.637 7.880 15.813 hybrid contribution 0.098 -1.738 0.215 1.754 sum -9.654 7.899 8.095 14.870 Atomic orbital electron populations 1.22925 0.79932 1.03610 1.00658 1.88040 1.21062 1.27411 1.95397 1.23307 0.93581 0.86080 1.01007 1.22151 0.93284 0.98963 0.89891 1.43230 1.60674 1.07518 1.06144 1.19367 1.07071 0.82090 1.38018 0.89658 1.26177 0.94051 1.02766 0.97419 1.70056 1.10971 1.36696 1.31755 0.85183 0.77229 0.79172 0.78275 1.21678 1.20775 1.17835 1.17099 0.83355 0.83693 0.84701 1.90605 1.48467 1.72498 1.31259 1.21446 1.11058 0.94132 0.92438 1.44355 1.47546 1.08328 1.16892 0.71849 1.24425 1.00681 0.86039 0.93321 1.20513 1.01841 0.91999 0.98052 1.69931 1.18573 1.24933 1.10781 1.21105 1.01897 0.88276 0.97621 1.19996 0.99577 1.01495 0.90468 0.91505 0.94637 0.89100 0.88060 0.94546 0.88979 0.89648 0.93321 0.87985 0.87703 0.88121 0.91352 0.90254 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 11.01 113.37 1.25 1.85 16 2 O -0.40 -13.76 10.47 -148.98 -1.56 -15.32 16 3 C 0.04 1.13 4.75 71.98 0.34 1.47 16 4 C 0.08 3.02 5.29 86.38 0.46 3.48 16 5 N -0.45 -23.25 2.50 -640.09 -1.60 -24.85 16 6 C -0.34 -19.00 9.09 84.09 0.76 -18.24 16 7 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 8 C 0.00 0.10 4.67 84.94 0.40 0.50 16 9 N -0.86 -53.18 10.88 21.68 0.24 -52.95 16 10 Si 0.98 46.25 29.57 68.60 2.03 48.27 16 11 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.25 -11.15 7.11 99.48 0.71 -10.44 16 14 C 0.52 28.51 6.83 86.43 0.59 29.10 16 15 O -0.55 -34.51 12.18 -4.41 -0.05 -34.57 16 16 C -0.07 -3.36 6.42 40.00 0.26 -3.10 16 17 N -0.56 -18.37 4.30 -176.09 -0.76 -19.13 16 18 H 0.43 11.59 3.73 -92.71 -0.35 11.24 16 19 C 0.22 6.58 8.12 138.18 1.12 7.70 16 20 C -0.07 -1.04 10.51 71.24 0.75 -0.29 16 21 N -0.52 -19.77 11.20 -175.45 -1.97 -21.73 16 22 C 0.04 1.91 7.15 42.00 0.30 2.21 16 23 C -0.06 -2.43 9.80 71.24 0.70 -1.74 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.16 6.63 -2.39 -0.02 1.14 16 29 H 0.09 3.37 7.99 -2.38 -0.02 3.35 16 30 H 0.09 2.83 5.16 -2.39 -0.01 2.82 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.06 2.82 6.72 -2.39 -0.02 2.80 16 Total: -1.00 -81.57 305.70 4.00 -77.58 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.74 Total: 19.75 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.92 Total: 22.94 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -4.09 Total: -118.65 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -1.61 Total: -49.89 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -81.57 4.00 -77.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909561592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.814 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds